honeymoose
/
hapi-fhir
mirror of https://github.com/hapifhir/hapi-fhir.git
1
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity

Start JSON parser

This commit is contained in:
jamesagnew 2014-03-14 08:57:30 -04:00
parent f0214399ca
commit f2ba56af2f
18 changed files with 1451 additions and 57 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
hapi-fhir-base/src/main/java/ca/uhn/fhir/context/BaseRuntimeChildDefinition.java
View File

@ -26,6 +26,10 @@ public abstract class BaseRuntimeChildDefinition {
List<? extends IElement> getValues(Object theTarget);
}
public abstract int getMax();
public abstract int getMin();
public interface IMutator {
void addValue(Object theTarget, IElement theValue);
}

5
hapi-fhir-base/src/main/java/ca/uhn/fhir/context/FhirContext.java
View File

@ -9,6 +9,7 @@ import java.util.Map;
import ca.uhn.fhir.model.api.IElement;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.parser.IParser;
import ca.uhn.fhir.parser.JsonParser;
import ca.uhn.fhir.parser.XmlParser;
import ca.uhn.fhir.rest.client.IRestfulClientFactory;
import ca.uhn.fhir.rest.client.RestfulClientFactory;
@ -92,4 +93,8 @@ public class FhirContext {
return myIdToResourceDefinition.values();
}
public IParser newJsonParser() {
return new JsonParser(this);
}
}

14
hapi-fhir-base/src/main/java/ca/uhn/fhir/context/RuntimeChildUndeclaredExtensionDefinition.java
View File

@ -13,6 +13,7 @@ import ca.uhn.fhir.model.api.IElement;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.api.BaseResourceReference;
import ca.uhn.fhir.model.api.UndeclaredExtension;
import ca.uhn.fhir.model.dstu.composite.ResourceReferenceDt;
public class RuntimeChildUndeclaredExtensionDefinition extends BaseRuntimeChildDefinition {
@ -77,6 +78,7 @@ public class RuntimeChildUndeclaredExtensionDefinition extends BaseRuntimeChildD
def.sealAndInitialize(theClassToElementDefinitions);
myAttributeNameToDefinition.put("valueResource", def);
myDatatypeToDefinition.put(BaseResourceReference.class, def);
myDatatypeToDefinition.put(ResourceReferenceDt.class, def);
}
@ -109,4 +111,16 @@ public class RuntimeChildUndeclaredExtensionDefinition extends BaseRuntimeChildD
}
@Override
public int getMax() {
return 1;
}
@Override
public int getMin() {
return 0;
}
}

2
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/ISupportsUndeclaredExtensions.java
View File

@ -2,7 +2,7 @@ package ca.uhn.fhir.model.api;
import java.util.List;
public interface ISupportsUndeclaredExtensions {
public interface ISupportsUndeclaredExtensions extends IElement {
/**
* Returns a list containing all undeclared non-modifier extensions

2
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/annotation/ResourceDef.java
View File

@ -13,7 +13,7 @@ public @interface ResourceDef {
String name();
String id();
String id() default "";
String profile() default "";

391
hapi-fhir-base/src/main/java/ca/uhn/fhir/parser/CopyOfJsonParser.java Normal file
View File

@ -0,0 +1,391 @@
package ca.uhn.fhir.parser;
public class CopyOfJsonParser {
// private FhirContext myContext;
//
// public CopyOfJsonParser(FhirContext theContext) {
// myContext = theContext;
// }
//
// @Override
// public String encodeBundleToString(Bundle theBundle) throws DataFormatException {
// StringWriter stringWriter = new StringWriter();
// encodeBundleToWriter(theBundle, stringWriter);
//
// return stringWriter.toString();
// }
//
// @Override
// public void encodeBundleToWriter(Bundle theBundle, Writer theWriter) {
// try {
// XMLStreamWriter eventWriter;
// eventWriter = myXmlOutputFactory.createXMLStreamWriter(theWriter);
// eventWriter = decorateStreamWriter(eventWriter);
//
// eventWriter.writeStartElement("feed");
// eventWriter.writeDefaultNamespace(ATOM_NS);
//
// writeTagWithTextNode(eventWriter, "title", theBundle.getTitle());
// writeTagWithTextNode(eventWriter, "id", theBundle.getId());
//
// writeAtomLink(eventWriter, "self", theBundle.getLinkSelf());
// writeAtomLink(eventWriter, "first", theBundle.getLinkFirst());
// writeAtomLink(eventWriter, "previous", theBundle.getLinkPrevious());
// writeAtomLink(eventWriter, "next", theBundle.getLinkNext());
// writeAtomLink(eventWriter, "last", theBundle.getLinkLast());
// writeAtomLink(eventWriter, "fhir-base", theBundle.getLinkBase());
//
// if (theBundle.getTotalResults().getValue() != null) {
// eventWriter.writeStartElement("os", OPENSEARCH_NS, "totalResults");
// eventWriter.writeNamespace("os", OPENSEARCH_NS);
// eventWriter.writeCharacters(theBundle.getTotalResults().getValue().toString());
// eventWriter.writeEndElement();
// }
//
// writeOptionalTagWithTextNode(eventWriter, "updated", theBundle.getUpdated());
// writeOptionalTagWithTextNode(eventWriter, "published", theBundle.getPublished());
//
// if (StringUtils.isNotBlank(theBundle.getAuthorName().getValue())) {
// eventWriter.writeStartElement("author");
// writeTagWithTextNode(eventWriter, "name", theBundle.getAuthorName());
// writeOptionalTagWithTextNode(eventWriter, "uri", theBundle.getAuthorUri());
// eventWriter.writeEndElement();
// }
//
// for (BundleEntry nextEntry : theBundle.getEntries()) {
// eventWriter.writeStartElement("entry");
//
// eventWriter.writeStartElement("content");
// eventWriter.writeAttribute("type", "text/xml");
//
// IResource resource = nextEntry.getResource();
// encodeResourceToXmlStreamWriter(resource, eventWriter);
//
// eventWriter.writeEndElement(); // content
// eventWriter.writeEndElement(); // entry
// }
//
// eventWriter.writeEndElement();
// eventWriter.close();
// } catch (XMLStreamException e) {
// throw new ConfigurationException("Failed to initialize STaX event factory", e);
// }
// }
//
// private void encodeChildElementToStreamWriter(JsonWriter theEventWriter, IElement nextValue, String childName, BaseRuntimeElementDefinition<?> childDef, String theExtensionUrl) {
// if (nextValue.isEmpty()) {
// return;
// }
//
// switch (childDef.getChildType()) {
// case PRIMITIVE_DATATYPE: {
// IPrimitiveDatatype<?> pd = (IPrimitiveDatatype<?>) nextValue;
// if (pd.getValue() != null) {
// theEventWriter.name(childName);
// if (pd instanceof IntegerDt) {
// theEventWriter.value(((IntegerDt)pd).getValue());
// } else if (pd instanceof DecimalDt) {
// theEventWriter.value(((DecimalDt)pd).getValue());
// } else if (pd instanceof BooleanDt) {
// theEventWriter.value(((BooleanDt)pd).getValue());
// } else {
// String value = pd.getValueAsString();
// theEventWriter.value(value);
// }
// theEventWriter.writeAttribute("value", value);
// encodeExtensionsIfPresent(theEventWriter, nextValue);
// theEventWriter.writeEndElement();
// }
// break;
// }
// case RESOURCE_BLOCK:
// case COMPOSITE_DATATYPE: {
// theEventWriter.writeStartElement(childName);
// if (isNotBlank(theExtensionUrl)) {
// theEventWriter.writeAttribute("url", theExtensionUrl);
// }
// BaseRuntimeElementCompositeDefinition<?> childCompositeDef = (BaseRuntimeElementCompositeDefinition<?>) childDef;
// encodeCompositeElementToStreamWriter(nextValue, theEventWriter, childCompositeDef);
// encodeExtensionsIfPresent(theEventWriter, nextValue);
// theEventWriter.writeEndElement();
// break;
// }
// case RESOURCE_REF: {
// ResourceReferenceDt ref = (ResourceReferenceDt) nextValue;
// if (!ref.isEmpty()) {
// theEventWriter.writeStartElement(childName);
// encodeResourceReferenceToStreamWriter(theEventWriter, ref);
// theEventWriter.writeEndElement();
// }
// break;
// }
// case RESOURCE: {
// throw new IllegalStateException(); // should not happen
// }
// case PRIMITIVE_XHTML: {
// XhtmlDt dt = (XhtmlDt) nextValue;
// if (dt.hasContent()) {
// encodeXhtml(dt, theEventWriter);
// }
// break;
// }
// case UNDECL_EXT: {
// throw new IllegalStateException("should not happen");
// }
// }
//
// }
//
// private void encodeCompositeElementChildrenToStreamWriter(IElement theElement, XMLStreamWriter theEventWriter, List<? extends BaseRuntimeChildDefinition> children) throws XMLStreamException,
// DataFormatException {
// for (BaseRuntimeChildDefinition nextChild : children) {
// List<? extends IElement> values = nextChild.getAccessor().getValues(theElement);
// if (values == null || values.isEmpty()) {
// continue;
// }
//
// for (IElement nextValue : values) {
// if (nextValue == null) {
// continue;
// }
// Class<? extends IElement> type = nextValue.getClass();
// String childName = nextChild.getChildNameByDatatype(type);
// String extensionUrl = nextChild.getExtensionUrl();
// BaseRuntimeElementDefinition<?> childDef = nextChild.getChildElementDefinitionByDatatype(type);
// if (childDef == null) {
// throw new IllegalStateException(nextChild + " has no child of type " + type);
// }
//
// if (extensionUrl != null && childName.equals("extension") == false) {
// RuntimeChildDeclaredExtensionDefinition extDef = (RuntimeChildDeclaredExtensionDefinition) nextChild;
// if (extDef.isModifier()) {
// theEventWriter.writeStartElement("modifierExtension");
// }else {
// theEventWriter.writeStartElement("extension");
// }
//
// theEventWriter.writeAttribute("url", extensionUrl);
// encodeChildElementToStreamWriter(theEventWriter, nextValue, childName, childDef, null);
// theEventWriter.writeEndElement();
// } else {
// encodeChildElementToStreamWriter(theEventWriter, nextValue, childName, childDef, extensionUrl);
// }
// }
// }
// }
//
// private void encodeCompositeElementToStreamWriter(IElement theElement, JsonWriter theEventWriter, BaseRuntimeElementCompositeDefinition<?> resDef) throws XMLStreamException,
// DataFormatException {
// encodeExtensionsIfPresent(theEventWriter, theElement);
// encodeCompositeElementChildrenToStreamWriter(theElement, theEventWriter, resDef.getExtensions());
// encodeCompositeElementChildrenToStreamWriter(theElement, theEventWriter, resDef.getChildren());
// }
//
// private void encodeExtensionsIfPresent(JsonWriter theWriter, IElement theResource) {
// if (theResource instanceof ISupportsUndeclaredExtensions) {
// ISupportsUndeclaredExtensions res = (ISupportsUndeclaredExtensions) theResource;
// encodeUndeclaredExtensions(theWriter, res.getUndeclaredExtensions(), "extension");
// encodeUndeclaredExtensions(theWriter, res.getUndeclaredModifierExtensions(), "modifierExtension");
// }
// }
//
// private void encodeUndeclaredExtensions(JsonWriter theWriter, List<UndeclaredExtension> extensions, String theTagName) throws XMLStreamException {
// if (extensions.isEmpty()) {
// return;
// }
//
// theWriter.name(theTagName);
// theWriter.beginArray();
//
// for (UndeclaredExtension next : extensions) {
// theWriter.name("url");
// theWriter.value(next.getUrl());
//
// if (next.getValue() != null) {
// IElement nextValue = next.getValue();
// RuntimeChildUndeclaredExtensionDefinition extDef = myContext.getRuntimeChildUndeclaredExtensionDefinition();
// String childName = extDef.getChildNameByDatatype(nextValue.getClass());
// BaseRuntimeElementDefinition<?> childDef = extDef.getChildElementDefinitionByDatatype(nextValue.getClass());
// encodeChildElementToStreamWriter(theWriter, nextValue, childName, childDef, null);
// }
//
// // child extensions
// encodeExtensionsIfPresent(theWriter, next);
//
// }
//
// theWriter.endArray();
// }
//
// private void encodeResourceReferenceToStreamWriter(XMLStreamWriter theEventWriter, ResourceReferenceDt theRef) throws XMLStreamException {
// if (!(theRef.getDisplay().isEmpty())) {
// theEventWriter.writeStartElement("display");
// theEventWriter.writeAttribute("value", theRef.getDisplay().getValue());
// theEventWriter.writeEndElement();
// }
// if (!(theRef.getReference().isEmpty())) {
// theEventWriter.writeStartElement("reference");
// theEventWriter.writeAttribute("value", theRef.getReference().getValue());
// theEventWriter.writeEndElement();
// }
// }
//
//
// @Override
// public String encodeResourceToString(IResource theResource) throws DataFormatException {
// Writer stringWriter = new StringWriter();
// encodeResourceToWriter(theResource, stringWriter);
// return stringWriter.toString();
// }
//
// @Override
// public void encodeResourceToWriter(IResource theResource, Writer theWriter) {
// JsonWriter eventWriter = new JsonWriter(theWriter);
//// try {
// encodeResourceToXmlStreamWriter(theResource, eventWriter);
// eventWriter.flush();
//// } catch (XMLStreamException e) {
//// throw new ConfigurationException("Failed to initialize STaX event factory", e);
//// }
// }
//
//
// private void encodeResourceToXmlStreamWriter(IResource theResource, JsonWriter theEventWriter) throws XMLStreamException, DataFormatException {
// RuntimeResourceDefinition resDef = myContext.getResourceDefinition(theResource);
//
// theEventWriter.beginObject();
//
// theEventWriter.name("resourceType");
// theEventWriter.value(resDef.getName());
//
// encodeCompositeElementToStreamWriter(theResource, theEventWriter, resDef);
//
// theEventWriter.writeEndElement();
// }
//
// private void encodeXhtml(XhtmlDt theDt, XMLStreamWriter theEventWriter) throws XMLStreamException {
// if (theDt == null || theDt.getValue() == null) {
// return;
// }
//
// boolean firstEvent = true;
// for (XMLEvent event : theDt.getValue()) {
// switch (event.getEventType()) {
// case XMLStreamConstants.ATTRIBUTE:
// Attribute attr = (Attribute) event;
// if (isBlank(attr.getName().getPrefix())) {
// if (isBlank(attr.getName().getNamespaceURI())) {
// theEventWriter.writeAttribute(attr.getName().getLocalPart(), attr.getValue());
// } else {
// theEventWriter.writeAttribute(attr.getName().getNamespaceURI(), attr.getName().getLocalPart(), attr.getValue());
// }
// } else {
// theEventWriter.writeAttribute(attr.getName().getPrefix(), attr.getName().getNamespaceURI(), attr.getName().getLocalPart(), attr.getValue());
// }
//
// break;
// case XMLStreamConstants.CDATA:
// theEventWriter.writeCData(((Characters) event).getData());
// break;
// case XMLStreamConstants.CHARACTERS:
// case XMLStreamConstants.SPACE:
// theEventWriter.writeCharacters(((Characters) event).getData());
// break;
// case XMLStreamConstants.COMMENT:
// theEventWriter.writeComment(((Comment) event).getText());
// break;
// case XMLStreamConstants.END_ELEMENT:
// theEventWriter.writeEndElement();
// break;
// case XMLStreamConstants.ENTITY_REFERENCE:
// EntityReference er = (EntityReference) event;
// theEventWriter.writeEntityRef(er.getName());
// break;
// case XMLStreamConstants.NAMESPACE:
// Namespace ns = (Namespace) event;
// theEventWriter.writeNamespace(ns.getPrefix(), ns.getNamespaceURI());
// break;
// case XMLStreamConstants.START_ELEMENT:
// StartElement se = event.asStartElement();
// if (firstEvent) {
// theEventWriter.writeStartElement(se.getName().getLocalPart());
// if (StringUtils.isBlank(se.getName().getPrefix())) {
// theEventWriter.writeDefaultNamespace(se.getName().getNamespaceURI());
// } else {
// theEventWriter.writeNamespace(se.getName().getPrefix(), se.getName().getNamespaceURI());
// }
// } else {
// if (isBlank(se.getName().getPrefix())) {
// if (isBlank(se.getName().getNamespaceURI())) {
// theEventWriter.writeStartElement(se.getName().getLocalPart());
// } else {
// if (StringUtils.isBlank(se.getName().getPrefix())) {
// theEventWriter.writeStartElement(se.getName().getLocalPart());
// theEventWriter.writeDefaultNamespace(se.getName().getNamespaceURI());
// } else {
// theEventWriter.writeStartElement(se.getName().getNamespaceURI(), se.getName().getLocalPart());
// }
// }
// } else {
// theEventWriter.writeStartElement(se.getName().getPrefix(), se.getName().getLocalPart(), se.getName().getNamespaceURI());
// }
// }
// break;
// case XMLStreamConstants.DTD:
// case XMLStreamConstants.END_DOCUMENT:
// case XMLStreamConstants.ENTITY_DECLARATION:
// case XMLStreamConstants.NOTATION_DECLARATION:
// case XMLStreamConstants.PROCESSING_INSTRUCTION:
// case XMLStreamConstants.START_DOCUMENT:
// break;
// }
//
// firstEvent = false;
// }
// }
//
// @Override
// public Bundle parseBundle(Reader theReader) {
// // TODO Auto-generated method stub
// return null;
// }
//
// @Override
// public Bundle parseBundle(String theMessageString) throws ConfigurationException, DataFormatException {
// // TODO Auto-generated method stub
// return null;
// }
//
// @Override
// public IResource parseResource(String theMessageString) throws ConfigurationException, DataFormatException {
// // TODO Auto-generated method stub
// return null;
// }
//
// @Override
// public IResource parseResource(Reader theReader) throws ConfigurationException, DataFormatException {
// // TODO Auto-generated method stub
// return null;
// }
//
// @Override
// public IResource parseResource(XMLEventReader theStreamReader) {
// // TODO Auto-generated method stub
// return null;
// }
//
// @Override
// public <T extends IResource> T parseResource(Class<T> theResourceType, String theMessageString) {
// // TODO Auto-generated method stub
// return null;
// }
//
// @Override
// public IResource parseResource(Class<? extends IResource> theResourceType, Reader theReader) {
// // TODO Auto-generated method stub
// return null;
// }
}

13
hapi-fhir-base/src/main/java/ca/uhn/fhir/parser/IParser.java
View File

@ -1,12 +1,9 @@
package ca.uhn.fhir.parser;
import java.io.IOException;
import java.io.Reader;
import java.io.Writer;
import javax.xml.stream.XMLEventReader;
import javax.xml.stream.XMLStreamException;
import javax.xml.stream.XMLStreamWriter;
import ca.uhn.fhir.context.ConfigurationException;
import ca.uhn.fhir.model.api.Bundle;
import ca.uhn.fhir.model.api.IResource;
@ -17,11 +14,9 @@ public interface IParser {
void encodeBundleToWriter(Bundle theBundle, Writer theWriter);
String encodeResourceToString(IResource theResource) throws DataFormatException;
String encodeResourceToString(IResource theResource) throws DataFormatException, IOException;
void encodeResourceToWriter(IResource theResource, Writer stringWriter);
void encodeResourceToXmlStreamWriter(IResource theResource, XMLStreamWriter eventWriter) throws XMLStreamException, DataFormatException;
void encodeResourceToWriter(IResource theResource, Writer stringWriter) throws IOException;
Bundle parseBundle(Reader theReader);
@ -31,8 +26,6 @@ public interface IParser {
IResource parseResource(Reader theReader) throws ConfigurationException, DataFormatException;
IResource parseResource(XMLEventReader theStreamReader);
<T extends IResource> T parseResource(Class<T> theResourceType, String theMessageString);
IResource parseResource(Class<? extends IResource> theResourceType, Reader theReader);

355
hapi-fhir-base/src/main/java/ca/uhn/fhir/parser/JsonParser.java Normal file
View File

@ -0,0 +1,355 @@
package ca.uhn.fhir.parser;
import static org.apache.commons.lang3.StringUtils.*;
import java.io.IOException;
import java.io.Reader;
import java.io.StringWriter;
import java.io.Writer;
import java.util.List;
import javax.xml.stream.XMLInputFactory;
import javax.xml.stream.XMLOutputFactory;
import org.apache.commons.lang3.StringUtils;
import com.google.gson.Gson;
import com.google.gson.GsonBuilder;
import com.google.gson.stream.JsonWriter;
import ca.uhn.fhir.context.BaseRuntimeChildDefinition;
import ca.uhn.fhir.context.BaseRuntimeElementCompositeDefinition;
import ca.uhn.fhir.context.BaseRuntimeElementDefinition;
import ca.uhn.fhir.context.ConfigurationException;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.context.RuntimeChildDeclaredExtensionDefinition;
import ca.uhn.fhir.context.RuntimeChildUndeclaredExtensionDefinition;
import ca.uhn.fhir.context.RuntimeResourceDefinition;
import ca.uhn.fhir.model.api.Bundle;
import ca.uhn.fhir.model.api.BundleEntry;
import ca.uhn.fhir.model.api.ICompositeDatatype;
import ca.uhn.fhir.model.api.IElement;
import ca.uhn.fhir.model.api.IPrimitiveDatatype;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.api.ISupportsUndeclaredExtensions;
import ca.uhn.fhir.model.api.UndeclaredExtension;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.dstu.composite.ResourceReferenceDt;
import ca.uhn.fhir.model.primitive.BooleanDt;
import ca.uhn.fhir.model.primitive.DecimalDt;
import ca.uhn.fhir.model.primitive.IntegerDt;
import ca.uhn.fhir.model.primitive.XhtmlDt;
public class JsonParser implements IParser {
private FhirContext myContext;
public JsonParser(FhirContext theContext) {
myContext = theContext;
}
@Override
public String encodeBundleToString(Bundle theBundle) throws DataFormatException {
StringWriter stringWriter = new StringWriter();
encodeBundleToWriter(theBundle, stringWriter);
return stringWriter.toString();
}
@Override
public void encodeBundleToWriter(Bundle theBundle, Writer theWriter) {
// try {
// XMLStreamWriter eventWriter;
// eventWriter = myXmlOutputFactory.createXMLStreamWriter(theWriter);
// eventWriter = decorateStreamWriter(eventWriter);
//
// eventWriter.writeStartElement("feed");
// eventWriter.writeDefaultNamespace(ATOM_NS);
//
// writeTagWithTextNode(eventWriter, "title", theBundle.getTitle());
// writeTagWithTextNode(eventWriter, "id", theBundle.getId());
//
// writeAtomLink(eventWriter, "self", theBundle.getLinkSelf());
// writeAtomLink(eventWriter, "first", theBundle.getLinkFirst());
// writeAtomLink(eventWriter, "previous", theBundle.getLinkPrevious());
// writeAtomLink(eventWriter, "next", theBundle.getLinkNext());
// writeAtomLink(eventWriter, "last", theBundle.getLinkLast());
// writeAtomLink(eventWriter, "fhir-base", theBundle.getLinkBase());
//
// if (theBundle.getTotalResults().getValue() != null) {
// eventWriter.writeStartElement("os", OPENSEARCH_NS, "totalResults");
// eventWriter.writeNamespace("os", OPENSEARCH_NS);
// eventWriter.writeCharacters(theBundle.getTotalResults().getValue().toString());
// eventWriter.writeEndElement();
// }
//
// writeOptionalTagWithTextNode(eventWriter, "updated",
// theBundle.getUpdated());
// writeOptionalTagWithTextNode(eventWriter, "published",
// theBundle.getPublished());
//
// if (StringUtils.isNotBlank(theBundle.getAuthorName().getValue())) {
// eventWriter.writeStartElement("author");
// writeTagWithTextNode(eventWriter, "name", theBundle.getAuthorName());
// writeOptionalTagWithTextNode(eventWriter, "uri",
// theBundle.getAuthorUri());
// eventWriter.writeEndElement();
// }
//
// for (BundleEntry nextEntry : theBundle.getEntries()) {
// eventWriter.writeStartElement("entry");
//
// eventWriter.writeStartElement("content");
// eventWriter.writeAttribute("type", "text/xml");
//
// IResource resource = nextEntry.getResource();
// encodeResourceToJsonStreamWriter(resource, eventWriter);
//
// eventWriter.writeEndElement(); // content
// eventWriter.writeEndElement(); // entry
// }
//
// eventWriter.writeEndElement();
// eventWriter.close();
// } catch (XMLStreamException e) {
// throw new
// ConfigurationException("Failed to initialize STaX event factory", e);
// }
}
private void encodeCompositeElementToStreamWriter(IElement theElement, JsonWriter theEventWriter, BaseRuntimeElementCompositeDefinition<?> resDef) throws IOException, DataFormatException {
encodeExtensionsIfPresent(theEventWriter, theElement);
encodeCompositeElementChildrenToStreamWriter(theElement, theEventWriter, resDef.getExtensions());
encodeCompositeElementChildrenToStreamWriter(theElement, theEventWriter, resDef.getChildren());
}
private void encodeCompositeElementChildrenToStreamWriter(IElement theElement, JsonWriter theEventWriter, List<? extends BaseRuntimeChildDefinition> theChildren) throws IOException {
for (BaseRuntimeChildDefinition nextChild : theChildren) {
List<? extends IElement> values = nextChild.getAccessor().getValues(theElement);
if (values == null || values.isEmpty()) {
continue;
}
String currentChildName = null;
boolean inArray = false;
IElement[] extensions = new IElement[values.size()];
IElement[] modifierExtensions = new IElement[values.size()];
boolean haveExtensions = false;
boolean haveModifierExtensions = false;
for (IElement nextValue : values) {
if (nextValue == null || nextValue.isEmpty()) {
continue;
}
Class<? extends IElement> type = nextValue.getClass();
String childName = nextChild.getChildNameByDatatype(type);
String extensionUrl = nextChild.getExtensionUrl();
BaseRuntimeElementDefinition<?> childDef = nextChild.getChildElementDefinitionByDatatype(type);
if (childDef == null) {
throw new IllegalStateException(nextChild + " has no child of type " + type);
}
if (extensionUrl != null && childName.equals("extension") == false) {
RuntimeChildDeclaredExtensionDefinition extDef = (RuntimeChildDeclaredExtensionDefinition) nextChild;
if (extDef.isModifier()) {
theEventWriter.name("modifierExtension");
} else {
theEventWriter.name("extension");
}
theEventWriter.beginObject();
theEventWriter.name("url");
theEventWriter.value(extensionUrl);
theEventWriter.name(childName);
encodeChildElementToStreamWriter(theEventWriter, nextValue, childName, childDef);
theEventWriter.endObject();
} else {
if (currentChildName == null || !currentChildName.equals(childName)) {
if (inArray) {
theEventWriter.endArray();
}
theEventWriter.name(childName);
if (nextChild.getMax() > 1 || nextChild.getMax() == Child.MAX_UNLIMITED){
theEventWriter.beginArray();
inArray = true;
}
currentChildName = childName;
}
encodeChildElementToStreamWriter(theEventWriter, nextValue, childName, childDef);
}
}
if (inArray) {
theEventWriter.endArray();
}
}
}
private void encodeExtensionsIfPresent(JsonWriter theWriter, IElement theResource) throws IOException {
if (theResource instanceof ISupportsUndeclaredExtensions) {
ISupportsUndeclaredExtensions res = (ISupportsUndeclaredExtensions) theResource;
encodeUndeclaredExtensions(theWriter, res.getUndeclaredExtensions(), "extension");
encodeUndeclaredExtensions(theWriter, res.getUndeclaredModifierExtensions(), "modifierExtension");
}
}
private void encodeUndeclaredExtensions(JsonWriter theWriter, List<UndeclaredExtension> extensions, String theTagName) throws IOException {
if (extensions.isEmpty()) {
return;
}
theWriter.name(theTagName);
theWriter.beginArray();
for (UndeclaredExtension next : extensions) {
theWriter.beginObject();
theWriter.name("url");
theWriter.value(next.getUrl());
if (next.getValue() != null) {
IElement nextValue = next.getValue();
RuntimeChildUndeclaredExtensionDefinition extDef = myContext.getRuntimeChildUndeclaredExtensionDefinition();
String childName = extDef.getChildNameByDatatype(nextValue.getClass());
BaseRuntimeElementDefinition<?> childDef = extDef.getChildElementDefinitionByDatatype(nextValue.getClass());
encodeChildElementToStreamWriter(theWriter, nextValue, childName, childDef);
}
encodeUndeclaredExtensions(theWriter, next.getUndeclaredExtensions(), "extension");
encodeUndeclaredExtensions(theWriter, next.getUndeclaredModifierExtensions(), "modifierExtension");
theWriter.endObject();
}
theWriter.endArray();
}
private void encodeChildElementToStreamWriter(JsonWriter theWriter, IElement theValue, String theChildName, BaseRuntimeElementDefinition<?> theChildDef) throws IOException {
switch (theChildDef.getChildType()) {
case PRIMITIVE_DATATYPE: {
IPrimitiveDatatype<?> value = (IPrimitiveDatatype<?>) theValue;
if (value instanceof IntegerDt) {
theWriter.value(((IntegerDt) value).getValue());
} else if (value instanceof DecimalDt) {
theWriter.value(((DecimalDt) value).getValue());
} else if (value instanceof BooleanDt) {
theWriter.value(((BooleanDt) value).getValue());
} else {
String valueStr = value.getValueAsString();
theWriter.value(valueStr);
}
break;
}
case RESOURCE_BLOCK:
case COMPOSITE_DATATYPE: {
BaseRuntimeElementCompositeDefinition<?> childCompositeDef = (BaseRuntimeElementCompositeDefinition<?>) theChildDef;
theWriter.beginObject();
encodeCompositeElementToStreamWriter(theValue, theWriter, childCompositeDef);
theWriter.endObject();
break;
}
case RESOURCE_REF: {
ResourceReferenceDt value = (ResourceReferenceDt) theValue;
theWriter.beginObject();
if (value.getReference().isEmpty()==false) {
theWriter.name("resource");
theWriter.value(value.getReference().getValueAsString());
}
if (value.getDisplay().isEmpty() == false) {
theWriter.name("display");
theWriter.value(value.getDisplay().getValueAsString());
}
theWriter.endObject();
break;
}
case PRIMITIVE_XHTML: {
XhtmlDt dt = (XhtmlDt) theValue;
theWriter.value(dt.getValueAsString());
break;
}
case UNDECL_EXT:
default:
throw new IllegalStateException("Should not have this state here: "+theChildDef.getChildType().name());
}
}
@Override
public String encodeResourceToString(IResource theResource) throws DataFormatException, IOException {
Writer stringWriter = new StringWriter();
encodeResourceToWriter(theResource, stringWriter);
return stringWriter.toString();
}
@Override
public void encodeResourceToWriter(IResource theResource, Writer theWriter) throws IOException {
JsonWriter eventWriter = new JsonWriter(theWriter);
eventWriter.setIndent(" ");
// try {
encodeResourceToJsonStreamWriter(theResource, eventWriter);
eventWriter.flush();
// } catch (XMLStreamException e) {
// throw new
// ConfigurationException("Failed to initialize STaX event factory", e);
// }
}
private void encodeResourceToJsonStreamWriter(IResource theResource, JsonWriter theEventWriter) throws IOException {
RuntimeResourceDefinition resDef = myContext.getResourceDefinition(theResource);
theEventWriter.beginObject();
theEventWriter.name("resourceType");
theEventWriter.value(resDef.getName());
encodeCompositeElementToStreamWriter(theResource, theEventWriter, resDef);
theEventWriter.endObject();
}
@Override
public Bundle parseBundle(Reader theReader) {
// TODO Auto-generated method stub
return null;
}
@Override
public Bundle parseBundle(String theMessageString) throws ConfigurationException, DataFormatException {
// TODO Auto-generated method stub
return null;
}
@Override
public IResource parseResource(String theMessageString) throws ConfigurationException, DataFormatException {
// TODO Auto-generated method stub
return null;
}
@Override
public IResource parseResource(Reader theReader) throws ConfigurationException, DataFormatException {
// TODO Auto-generated method stub
return null;
}
@Override
public <T extends IResource> T parseResource(Class<T> theResourceType, String theMessageString) {
// TODO Auto-generated method stub
return null;
}
@Override
public IResource parseResource(Class<? extends IResource> theResourceType, Reader theReader) {
// TODO Auto-generated method stub
return null;
}
}

42
hapi-fhir-base/src/main/java/ca/uhn/fhir/parser/XmlParser.java
View File

@ -1,7 +1,6 @@
package ca.uhn.fhir.parser;
import static org.apache.commons.lang3.StringUtils.isBlank;
import static org.apache.commons.lang3.StringUtils.isNotBlank;
import static org.apache.commons.lang3.StringUtils.*;
import java.io.Reader;
import java.io.StringReader;
@ -43,7 +42,6 @@ import ca.uhn.fhir.model.api.IElement;
import ca.uhn.fhir.model.api.IPrimitiveDatatype;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.api.ISupportsUndeclaredExtensions;
import ca.uhn.fhir.model.api.BaseResourceReference;
import ca.uhn.fhir.model.api.UndeclaredExtension;
import ca.uhn.fhir.model.dstu.composite.ResourceReferenceDt;
import ca.uhn.fhir.model.primitive.InstantDt;
@ -149,11 +147,6 @@ public class XmlParser implements IParser {
}
}
/*
* (non-Javadoc)
*
* @see ca.uhn.fhir.parser.IParser#encodeBundleToString(ca.uhn.fhir.model.api.Bundle)
*/
@Override
public String encodeBundleToString(Bundle theBundle) throws DataFormatException {
StringWriter stringWriter = new StringWriter();
@ -162,11 +155,6 @@ public class XmlParser implements IParser {
return stringWriter.toString();
}
/*
* (non-Javadoc)
*
* @see ca.uhn.fhir.parser.IParser#encodeBundleToWriter(ca.uhn.fhir.model.api.Bundle, java.io.Writer)
*/
@Override
public void encodeBundleToWriter(Bundle theBundle, Writer theWriter) {
try {
@ -366,11 +354,7 @@ public class XmlParser implements IParser {
}
}
/*
* (non-Javadoc)
*
* @see ca.uhn.fhir.parser.IParser#encodeResourceToString(ca.uhn.fhir.model.api.IResource)
*/
@Override
public String encodeResourceToString(IResource theResource) throws DataFormatException {
Writer stringWriter = new StringWriter();
@ -378,11 +362,6 @@ public class XmlParser implements IParser {
return stringWriter.toString();
}
/*
* (non-Javadoc)
*
* @see ca.uhn.fhir.parser.IParser#encodeResourceToWriter(ca.uhn.fhir.model.api.IResource, java.io.Writer)
*/
@Override
public void encodeResourceToWriter(IResource theResource, Writer stringWriter) {
XMLStreamWriter eventWriter;
@ -397,13 +376,8 @@ public class XmlParser implements IParser {
}
}
/*
* (non-Javadoc)
*
* @see ca.uhn.fhir.parser.IParser#encodeResourceToXmlStreamWriter(ca.uhn.fhir.model.api.IResource, javax.xml.stream.XMLStreamWriter)
*/
@Override
public void encodeResourceToXmlStreamWriter(IResource theResource, XMLStreamWriter eventWriter) throws XMLStreamException, DataFormatException {
private void encodeResourceToXmlStreamWriter(IResource theResource, XMLStreamWriter eventWriter) throws XMLStreamException, DataFormatException {
RuntimeResourceDefinition resDef = myContext.getResourceDefinition(theResource);
eventWriter.writeStartElement(resDef.getName());
eventWriter.writeDefaultNamespace(FHIR_NS);
@ -520,13 +494,7 @@ public class XmlParser implements IParser {
return parseResource(null, theMessageString);
}
/*
* (non-Javadoc)
*
* @see ca.uhn.fhir.parser.IParser#parseResource(javax.xml.stream.XMLEventReader)
*/
@Override
public IResource parseResource(XMLEventReader theStreamReader) {
private IResource parseResource(XMLEventReader theStreamReader) {
return parseResource(null, theStreamReader);
}

5
hapi-fhir-base/src/site/example/java/example/FhirContextIntro.java
View File

@ -1,5 +1,7 @@
package example;
import java.io.IOException;
import ca.uhn.fhir.model.dstu.composite.HumanNameDt;
import ca.uhn.fhir.model.dstu.composite.IdentifierDt;
import ca.uhn.fhir.model.dstu.resource.Observation;
@ -7,6 +9,7 @@ import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.dstu.valueset.NameUseEnum;
import ca.uhn.fhir.model.primitive.CodeDt;
import ca.uhn.fhir.model.primitive.StringDt;
import ca.uhn.fhir.parser.DataFormatException;
import ca.uhn.fhir.parser.IParser;
import ca.uhn.fhir.context.FhirContext;
@ -33,7 +36,7 @@ Patient patient = new Patient();
}
public void encodeMsg() {
public void encodeMsg() throws DataFormatException, IOException {
FhirContext ctx = new FhirContext(Patient.class, Observation.class);
//START SNIPPET: encodeMsg

7
hapi-fhir-base/src/test/java/ca/uhn/fhir/context/RuntimeResourceDefinitionTest.java
View File

@ -2,6 +2,8 @@ package ca.uhn.fhir.context;
import static org.junit.Assert.*;
import java.io.IOException;
import org.junit.Test;
import ca.uhn.fhir.model.dstu.resource.Patient;
@ -9,12 +11,13 @@ import ca.uhn.fhir.model.dstu.resource.Profile;
import ca.uhn.fhir.model.dstu.resource.Profile.ExtensionDefn;
import ca.uhn.fhir.model.dstu.resource.Profile.Structure;
import ca.uhn.fhir.model.dstu.valueset.DataTypeEnum;
import ca.uhn.fhir.parser.DataFormatException;
public class RuntimeResourceDefinitionTest {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(RuntimeResourceDefinitionTest.class);
@Test
public void testToProfileStandard() {
public void testToProfileStandard() throws Exception {
FhirContext ctx = new FhirContext(Patient.class, Profile.class);
RuntimeResourceDefinition def = ctx.getResourceDefinition(Patient.class);
@ -33,7 +36,7 @@ public class RuntimeResourceDefinitionTest {
}
@Test
public void testToProfileExtensions() {
public void testToProfileExtensions() throws Exception {
FhirContext ctx = new FhirContext(ResourceWithExtensionsA.class, Profile.class);
RuntimeResourceDefinition def = ctx.getResourceDefinition(ResourceWithExtensionsA.class);

27
hapi-fhir-base/src/test/java/ca/uhn/fhir/parser/JsonParserTest.java Normal file
View File

@ -0,0 +1,27 @@
package ca.uhn.fhir.parser;
import java.io.IOException;
import org.apache.commons.io.IOUtils;
import org.junit.Test;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.dstu.resource.Observation;
import ca.uhn.fhir.model.dstu.resource.Patient;
public class JsonParserTest {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(JsonParserTest.class);
@Test
public void testSimpleEncode() throws IOException {
FhirContext ctx = new FhirContext(Observation.class);
// String name = "/observation-example-eeg.xml";
String name = "/example-patient-general.xml";
Patient obs = ctx.newXmlParser().parseResource(Patient.class, IOUtils.toString(JsonParser.class.getResourceAsStream(name)));
String encoded = ctx.newJsonParser().encodeResourceToString(obs);
ourLog.info(encoded);
}
}

23
hapi-fhir-base/src/test/java/ca/uhn/fhir/parser/XmlParserTest.java
View File

@ -145,6 +145,29 @@ public class XmlParserTest {
}
@Test
public void testMessageWithMultipleTypes() throws SAXException, IOException {
//@formatter:off
String msg = "<Patient xmlns=\"http://hl7.org/fhir\">"
+ "<identifier><label value=\"SSN\" /><system value=\"http://orionhealth.com/mrn\" /><value value=\"PRP1660\" /></identifier>"
+ "</Patient>";
//@formatter:on
FhirContext ctx = new FhirContext(Patient.class, ca.uhn.fhir.testmodel.Patient.class);
Patient patient1 = ctx.newXmlParser().parseResource(Patient.class, msg);
String encoded1 = ctx.newXmlParser().encodeResourceToString(patient1);
ca.uhn.fhir.testmodel.Patient patient2 = ctx.newXmlParser().parseResource(ca.uhn.fhir.testmodel.Patient.class, msg);
String encoded2 = ctx.newXmlParser().encodeResourceToString(patient2);
Diff d = new Diff(new StringReader(encoded1), new StringReader(encoded2));
assertTrue(d.toString(), d.identical());
}
@Test
public void testLoadAndEncodeDeclaredExtensions() throws ConfigurationException, DataFormatException, SAXException, IOException {
FhirContext ctx = new FhirContext(ResourceWithExtensionsA.class);

5
hapi-fhir-base/src/test/java/ca/uhn/fhir/rest/client/Tester.java
View File

@ -1,15 +1,18 @@
package ca.uhn.fhir.rest.client;
import java.io.IOException;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.api.Bundle;
import ca.uhn.fhir.model.dstu.composite.IdentifierDt;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.parser.DataFormatException;
import ca.uhn.fhir.rest.client.exceptions.NonFhirResponseException;
public class Tester {
public static final void main(String[] args) {
public static final void main(String[] args) throws DataFormatException, IOException {
try {
FhirContext ctx = new FhirContext(Patient.class);

391
hapi-fhir-base/src/test/java/ca/uhn/fhir/testmodel/IdentifierDt.java Normal file
View File

@ -0,0 +1,391 @@
package ca.uhn.fhir.testmodel;
import ca.uhn.fhir.model.api.BaseElement;
import ca.uhn.fhir.model.api.ICompositeDatatype;
import ca.uhn.fhir.model.api.IQueryParameterType;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.DatatypeDef;
import ca.uhn.fhir.model.api.annotation.Description;
import ca.uhn.fhir.model.dstu.composite.PeriodDt;
import ca.uhn.fhir.model.dstu.composite.ResourceReferenceDt;
import ca.uhn.fhir.model.dstu.resource.Organization;
import ca.uhn.fhir.model.dstu.valueset.IdentifierUseEnum;
import ca.uhn.fhir.model.primitive.BoundCodeDt;
import ca.uhn.fhir.model.primitive.CodeDt;
import ca.uhn.fhir.model.primitive.StringDt;
import ca.uhn.fhir.model.primitive.UriDt;
/**
* HAPI/FHIR <b>Identifier</b> Datatype
* (An identifier intended for computation)
*
* <p>
* <b>Definition:</b>
* A technical identifier - identifies some entity uniquely and unambiguously
* </p>
*
* <p>
* <b>Requirements:</b>
* Need to be able to identify things with confidence and be sure that the identification is not subject to misinterpretation
* </p>
*/
@DatatypeDef(name="Identifier")
public class IdentifierDt
extends BaseElement implements ICompositeDatatype , IQueryParameterType {
/**
* Creates a new identifier
*/
public IdentifierDt() {
// nothing
}
/**
* Creates a new identifier with the given system and value
*/
public IdentifierDt(String theSystem, String theValue) {
setSystem(theSystem);
setValue(theValue);
}
@Child(name="use", type=CodeDt.class, order=0, min=0, max=1)
@Description(
shortDefinition="usual | official | temp | secondary (If known)",
formalDefinition="The purpose of this identifier"
)
private BoundCodeDt<IdentifierUseEnum> myUse;
@Child(name="label", type=StringDt.class, order=1, min=0, max=1)
@Description(
shortDefinition="Description of identifier",
formalDefinition="A text string for the identifier that can be displayed to a human so they can recognize the identifier"
)
private StringDt myLabel;
@Child(name="system", type=UriDt.class, order=2, min=0, max=1)
@Description(
shortDefinition="The namespace for the identifier",
formalDefinition="Establishes the namespace in which set of possible id values is unique."
)
private UriDt mySystem;
@Child(name="value", type=StringDt.class, order=3, min=0, max=1)
@Description(
shortDefinition="The value that is unique",
formalDefinition="The portion of the identifier typically displayed to the user and which is unique within the context of the system."
)
private StringDt myValue;
@Child(name="period", type=PeriodDt.class, order=4, min=0, max=1)
@Description(
shortDefinition="Time period when id is/was valid for use",
formalDefinition="Time period during which identifier is/was valid for use"
)
private PeriodDt myPeriod;
@Child(name="assigner", order=5, min=0, max=1, type={
Organization.class,
})
@Description(
shortDefinition="Organization that issued id (may be just text)",
formalDefinition="Organization that issued/manages the identifier"
)
private ResourceReferenceDt myAssigner;
@Override
public boolean isEmpty() {
return super.isBaseEmpty() && ca.uhn.fhir.util.ElementUtil.isEmpty( myUse, myLabel, mySystem, myValue, myPeriod, myAssigner);
}
/**
* Gets the value(s) for <b>use</b> (usual | official | temp | secondary (If known)).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* The purpose of this identifier
* </p>
*/
public BoundCodeDt<IdentifierUseEnum> getUse() {
if (myUse == null) {
myUse = new BoundCodeDt<IdentifierUseEnum>(IdentifierUseEnum.VALUESET_BINDER);
}
return myUse;
}
/**
* Sets the value(s) for <b>use</b> (usual | official | temp | secondary (If known))
*
* <p>
* <b>Definition:</b>
* The purpose of this identifier
* </p>
*/
public void setUse(BoundCodeDt<IdentifierUseEnum> theValue) {
myUse = theValue;
}
/**
* Sets the value(s) for <b>use</b> (usual | official | temp | secondary (If known))
*
* <p>
* <b>Definition:</b>
* The purpose of this identifier
* </p>
*/
public void setUse(IdentifierUseEnum theValue) {
getUse().setValueAsEnum(theValue);
}
/**
* Gets the value(s) for <b>label</b> (Description of identifier).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* A text string for the identifier that can be displayed to a human so they can recognize the identifier
* </p>
*/
public StringDt getLabel() {
if (myLabel == null) {
myLabel = new StringDt();
}
return myLabel;
}
/**
* Sets the value(s) for <b>label</b> (Description of identifier)
*
* <p>
* <b>Definition:</b>
* A text string for the identifier that can be displayed to a human so they can recognize the identifier
* </p>
*/
public void setLabel(StringDt theValue) {
myLabel = theValue;
}
/**
* Sets the value for <b>label</b> (Description of identifier)
*
* <p>
* <b>Definition:</b>
* A text string for the identifier that can be displayed to a human so they can recognize the identifier
* </p>
*/
public void setLabel( String theString) {
myLabel = new StringDt(theString);
}
/**
* Gets the value(s) for <b>system</b> (The namespace for the identifier).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* Establishes the namespace in which set of possible id values is unique.
* </p>
*/
public UriDt getSystem() {
if (mySystem == null) {
mySystem = new UriDt();
}
return mySystem;
}
/**
* Sets the value(s) for <b>system</b> (The namespace for the identifier)
*
* <p>
* <b>Definition:</b>
* Establishes the namespace in which set of possible id values is unique.
* </p>
*/
public void setSystem(UriDt theValue) {
mySystem = theValue;
}
/**
* Sets the value for <b>system</b> (The namespace for the identifier)
*
* <p>
* <b>Definition:</b>
* Establishes the namespace in which set of possible id values is unique.
* </p>
*/
public void setSystem( String theUri) {
mySystem = new UriDt(theUri);
}
/**
* Gets the value(s) for <b>value</b> (The value that is unique).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* The portion of the identifier typically displayed to the user and which is unique within the context of the system.
* </p>
*/
public StringDt getValue() {
if (myValue == null) {
myValue = new StringDt();
}
return myValue;
}
/**
* Sets the value(s) for <b>value</b> (The value that is unique)
*
* <p>
* <b>Definition:</b>
* The portion of the identifier typically displayed to the user and which is unique within the context of the system.
* </p>
*/
public void setValue(StringDt theValue) {
myValue = theValue;
}
/**
* Sets the value for <b>value</b> (The value that is unique)
*
* <p>
* <b>Definition:</b>
* The portion of the identifier typically displayed to the user and which is unique within the context of the system.
* </p>
*/
public void setValue( String theString) {
myValue = new StringDt(theString);
}
/**
* Gets the value(s) for <b>period</b> (Time period when id is/was valid for use).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* Time period during which identifier is/was valid for use
* </p>
*/
public PeriodDt getPeriod() {
if (myPeriod == null) {
myPeriod = new PeriodDt();
}
return myPeriod;
}
/**
* Sets the value(s) for <b>period</b> (Time period when id is/was valid for use)
*
* <p>
* <b>Definition:</b>
* Time period during which identifier is/was valid for use
* </p>
*/
public void setPeriod(PeriodDt theValue) {
myPeriod = theValue;
}
/**
* Gets the value(s) for <b>assigner</b> (Organization that issued id (may be just text)).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* Organization that issued/manages the identifier
* </p>
*/
public ResourceReferenceDt getAssigner() {
if (myAssigner == null) {
myAssigner = new ResourceReferenceDt();
}
return myAssigner;
}
/**
* Sets the value(s) for <b>assigner</b> (Organization that issued id (may be just text))
*
* <p>
* <b>Definition:</b>
* Organization that issued/manages the identifier
* </p>
*/
public void setAssigner(ResourceReferenceDt theValue) {
myAssigner = theValue;
}
/**
* Returns true if <code>this</code> identifier has the same {@link IdentifierDt#getValue() value}
* and {@link IdentifierDt#getSystem() system} (as compared by simple equals comparison).
* Does not compare other values (e.g. {@link IdentifierDt#getUse() use}) or any extensions.
*/
public boolean matchesSystemAndValue(IdentifierDt theIdentifier) {
if (theIdentifier == null) {
return false;
}
return getValue().equals(theIdentifier.getValue()) && getSystem().equals(theIdentifier.getSystem());
}
/**
* {@inheritDoc}
*/
@Override
public String getValueAsQueryToken() {
if (org.apache.commons.lang3.StringUtils.isNotBlank(getSystem().getValueAsString())) {
return getSystem().getValueAsString() + '|' + getValue().getValueAsString();
} else {
return getValue().getValueAsString();
}
}
/**
* {@inheritDoc}
*/
@Override
public void setValueAsQueryToken(String theParameter) {
int barIndex = theParameter.indexOf('|');
if (barIndex != -1) {
setSystem(new UriDt(theParameter.substring(0, barIndex)));
setValue(theParameter.substring(barIndex + 1));
} else {
setValue(theParameter);
}
}
}

101
hapi-fhir-base/src/test/java/ca/uhn/fhir/testmodel/Patient.java Normal file
View File

@ -0,0 +1,101 @@
package ca.uhn.fhir.testmodel;
import java.util.*;
import ca.uhn.fhir.model.api.*;
import ca.uhn.fhir.model.api.annotation.*;
/**
* HAPI/FHIR <b>Patient</b> Resource
* (Information about a person or animal receiving health care services)
*
* <p>
* <b>Definition:</b>
* Demographics and other administrative information about a person or animal receiving care or other health-related services
* </p>
*
* <p>
* <b>Requirements:</b>
* Tracking patient is the center of the healthcare process
* </p>
*/
@ResourceDef(name="Patient", profile="http://hl7.org/fhir/profiles/Patient")
public class Patient extends BaseResource implements IResource {
@Child(name="identifier", type=IdentifierDt.class, order=0, min=0, max=Child.MAX_UNLIMITED)
@Description(
shortDefinition="An identifier for the person as this patient",
formalDefinition="An identifier that applies to this person as a patient"
)
private List<IdentifierDt> myIdentifier;
@Override
public boolean isEmpty() {
return super.isBaseEmpty() && ca.uhn.fhir.util.ElementUtil.isEmpty( myIdentifier);
}
/**
* Gets the value(s) for <b>identifier</b> (An identifier for the person as this patient).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* An identifier that applies to this person as a patient
* </p>
*/
public List<IdentifierDt> getIdentifier() {
if (myIdentifier == null) {
myIdentifier = new ArrayList<IdentifierDt>();
}
return myIdentifier;
}
/**
* Sets the value(s) for <b>identifier</b> (An identifier for the person as this patient)
*
* <p>
* <b>Definition:</b>
* An identifier that applies to this person as a patient
* </p>
*/
public void setIdentifier(List<IdentifierDt> theValue) {
myIdentifier = theValue;
}
/**
* Adds and returns a new value for <b>identifier</b> (An identifier for the person as this patient)
*
* <p>
* <b>Definition:</b>
* An identifier that applies to this person as a patient
* </p>
*/
public IdentifierDt addIdentifier() {
IdentifierDt newType = new IdentifierDt();
getIdentifier().add(newType);
return newType;
}
}

114
hapi-fhir-base/src/test/resources/example-patient-general.xml Normal file
View File

@ -0,0 +1,114 @@
<Patient xmlns="http://hl7.org/fhir">
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">
<table>
<tbody>
<tr>
<td>Name</td>
<td>Peter James <b>Chalmers</b> (&quot;Jim&quot;)</td>
</tr>
<tr>
<td>Address</td>
<td>534 Erewhon, Pleasantville, Vic, 3999</td>
</tr>
<tr>
<td>Contacts</td>
<td>Home: unknown. Work: (03) 5555 6473</td>
</tr>
<tr>
<td>Id</td>
<td>MRN: 12345 (Acme Healthcare)</td>
</tr>
</tbody>
</table>
</div>
</text>
<!-- MRN assigned by ACME healthcare on 6-May 2001 -->
<identifier>
<use value="usual"/>
<label value="MRN"/>
<system value="urn:oid:1.2.36.146.595.217.0.1"/>
<value value="12345"/>
<period>
<start value="2001-05-06"/>
</period>
<assigner>
<display value="Acme Healthcare"/>
</assigner>
</identifier>
<!-- Peter James Chalmers, but called &quot;Jim&quot; -->
<name>
<use value="official"/>
<family value="Chalmers"/>
<given value="Peter"/>
<given value="James"/>
</name>
<name>
<use value="usual"/>
<given value="Jim"/>
</name>
<telecom>
<use value="home"/>
<!-- home communication details aren't known -->
</telecom>
<telecom>
<system value="phone"/>
<value value="(03) 5555 6473"/>
<use value="work"/>
</telecom>
<!-- use FHIR code system for male / female -->
<gender>
<coding>
<system value="http://hl7.org/fhir/v3/AdministrativeGender"/>
<code value="M"/>
<display value="Male"/>
</coding>
</gender>
<birthDate value="1974-12-25"/>
<deceasedBoolean value="false"/>
<address>
<use value="home"/>
<line value="534 Erewhon St"/>
<city value="PleasantVille"/>
<state value="Vic"/>
<zip value="3999"/>
</address>
<contact>
<relationship>
<coding>
<system value="http://hl7.org/fhir/patient-contact-relationship"/>
<code value="partner"/>
</coding>
</relationship>
<name>
<family value="du">
<!-- the &quot;du&quot; part is a family name prefix (VV in iso 21090) -->
<extension url="http://hl7.org/fhir/Profile/iso-21090#qualifier">
<valueCode value="VV"/>
</extension>
</family>
<family value="Marché"/>
<given value="Bénédicte"/>
</name>
<telecom>
<system value="phone"/>
<value value="+33 (237) 998327"/>
</telecom>
</contact>
<managingOrganization>
<reference value="Organization/1"/>
</managingOrganization>
<active value="true"/>
</Patient>

7
hapi-fhir-base/src/test/resources/observation-example-eeg.xml
View File

@ -2,7 +2,6 @@
<!-- This example is taken from the v3 data types (SLIST) -->
<Observation xmlns="http://hl7.org/fhir" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://hl7.org/fhir ..\..\schema\observation.xsd">
<!--
<extension url="http://acme.org/fhir/Profile/main#trial-status">
<extension url="http://acme.org/fhir/Profile/main#trial-status-code">
<valueCode value="unsure" />
@ -16,13 +15,13 @@
</valueResource>
</extension>
</extension>
-->
<!--
<extension url="http://acme.org/fhir/Profile/main#foobar">
<valueCode value="unsure" />
</extension>
<text>
<status value="generated" />
<div xmlns="http://www.w3.org/1999/xhtml">Sept 17, 2012: Systolic Blood pressure 107 mmHg (normal)</div>
</text>
-->
<name>
<!-- Actually, this is not a vull EEG. A todo is to turn it into one -->
<coding>