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Merge branch 'master' into windows-fixes-2 

# Conflicts:
#	hapi-fhir-jpaserver-subscription/src/main/java/ca/uhn/fhir/jpa/subscription/module/ResourceModifiedMessage.java
#	hapi-fhir-jpaserver-subscription/src/test/java/ca/uhn/fhir/jpa/subscription/module/FhirObjectPrinter.java
#	hapi-fhir-jpaserver-subscription/src/test/java/ca/uhn/fhir/jpa/subscription/module/PointcutLatch.java
#	pom.xml
This commit is contained in:
Ken Stevens 2019-02-01 16:40:49 -05:00
parent 5ca352aeb8 9280cde491
commit f40148fba5
28 changed files with 1356 additions and 83 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

21
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/subscription/SubscriptionActivatingInterceptor.java
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@ -29,22 +29,20 @@ import ca.uhn.fhir.jpa.dao.IFhirResourceDao;
import ca.uhn.fhir.jpa.model.interceptor.api.Hook;
import ca.uhn.fhir.jpa.model.interceptor.api.Interceptor;
import ca.uhn.fhir.jpa.model.interceptor.api.Pointcut;
import ca.uhn.fhir.jpa.searchparam.MatchUrlService;
import ca.uhn.fhir.jpa.subscription.module.ResourceModifiedMessage;
import ca.uhn.fhir.jpa.subscription.module.cache.SubscriptionCanonicalizer;
import ca.uhn.fhir.jpa.subscription.module.cache.SubscriptionConstants;
import ca.uhn.fhir.jpa.subscription.module.cache.SubscriptionRegistry;
import ca.uhn.fhir.jpa.subscription.module.matcher.SubscriptionMatchingStrategy;
import ca.uhn.fhir.jpa.subscription.module.matcher.SubscriptionStrategyEvaluator;
import ca.uhn.fhir.model.dstu2.valueset.ResourceTypeEnum;
import ca.uhn.fhir.parser.DataFormatException;
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
import ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException;
import ca.uhn.fhir.util.SubscriptionUtil;
import com.google.common.annotations.VisibleForTesting;
import org.hl7.fhir.instance.model.Subscription;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IIdType;
import org.hl7.fhir.instance.model.api.IPrimitiveType;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
@ -76,8 +74,6 @@ public class SubscriptionActivatingInterceptor {
private Logger ourLog = LoggerFactory.getLogger(SubscriptionActivatingInterceptor.class);
private static boolean ourWaitForSubscriptionActivationSynchronouslyForUnitTest;
private static final String REQUESTED_STATUS = Subscription.SubscriptionStatus.REQUESTED.toCode();
private static final String ACTIVE_STATUS = Subscription.SubscriptionStatus.ACTIVE.toCode();
@Autowired
private PlatformTransactionManager myTransactionManager;
@ -93,8 +89,6 @@ public class SubscriptionActivatingInterceptor {
@Autowired
private SubscriptionCanonicalizer mySubscriptionCanonicalizer;
@Autowired
private MatchUrlService myMatchUrlService;
@Autowired
private DaoConfig myDaoConfig;
@Autowired
private SubscriptionStrategyEvaluator mySubscriptionStrategyEvaluator;
@ -104,7 +98,7 @@ public class SubscriptionActivatingInterceptor {
// subscriber applies..
String subscriptionChannelTypeCode = myFhirContext
.newTerser()
.getSingleValueOrNull(theSubscription, SubscriptionMatcherInterceptor.SUBSCRIPTION_TYPE, IPrimitiveType.class)
.getSingleValueOrNull(theSubscription, SubscriptionConstants.SUBSCRIPTION_TYPE, IPrimitiveType.class)
.getValueAsString();
Subscription.SubscriptionChannelType subscriptionChannelType = Subscription.SubscriptionChannelType.fromCode(subscriptionChannelTypeCode);
@ -113,10 +107,9 @@ public class SubscriptionActivatingInterceptor {
return false;
}
final IPrimitiveType<?> status = myFhirContext.newTerser().getSingleValueOrNull(theSubscription, SubscriptionMatcherInterceptor.SUBSCRIPTION_STATUS, IPrimitiveType.class);
String statusString = status.getValueAsString();
String statusString = mySubscriptionCanonicalizer.getSubscriptionStatus(theSubscription);
if (REQUESTED_STATUS.equals(statusString)) {
if (SubscriptionConstants.REQUESTED_STATUS.equals(statusString)) {
if (TransactionSynchronizationManager.isSynchronizationActive()) {
/*
* If we're in a transaction, we don't want to try and change the status from
@ -133,7 +126,7 @@ public class SubscriptionActivatingInterceptor {
Future<?> activationFuture = myTaskExecutor.submit(new Runnable() {
@Override
public void run() {
activateSubscription(ACTIVE_STATUS, theSubscription, REQUESTED_STATUS);
activateSubscription(SubscriptionConstants.ACTIVE_STATUS, theSubscription, SubscriptionConstants.REQUESTED_STATUS);
}
});
@ -152,9 +145,9 @@ public class SubscriptionActivatingInterceptor {
});
return true;
} else {
return activateSubscription(ACTIVE_STATUS, theSubscription, REQUESTED_STATUS);
return activateSubscription(SubscriptionConstants.ACTIVE_STATUS, theSubscription, SubscriptionConstants.REQUESTED_STATUS);
}
} else if (ACTIVE_STATUS.equals(statusString)) {
} else if (SubscriptionConstants.ACTIVE_STATUS.equals(statusString)) {
return mySubscriptionRegistry.registerSubscriptionUnlessAlreadyRegistered(theSubscription);
} else {
// Status isn't "active" or "requested"

2
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/subscription/SubscriptionMatcherInterceptor.java
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@ -48,8 +48,6 @@ public class SubscriptionMatcherInterceptor implements IResourceModifiedConsumer
private Logger ourLog = LoggerFactory.getLogger(SubscriptionMatcherInterceptor.class);
private static final String SUBSCRIPTION_MATCHING_CHANNEL_NAME = "subscription-matching";
static final String SUBSCRIPTION_STATUS = "Subscription.status";
static final String SUBSCRIPTION_TYPE = "Subscription.channel.type";
private SubscribableChannel myProcessingChannel;
@Autowired

5
hapi-fhir-jpaserver-subscription/pom.xml
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@ -97,6 +97,11 @@
<artifactId>jetty-servlet</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-test</artifactId>
<scope>test</scope>
</dependency>
</dependencies>
<build>
<pluginManagement>

15
hapi-fhir-jpaserver-subscription/src/main/java/ca/uhn/fhir/jpa/subscription/module/ResourceModifiedMessage.java
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@ -27,6 +27,7 @@ import com.fasterxml.jackson.annotation.JsonAutoDetect;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.fasterxml.jackson.annotation.JsonInclude;
import com.fasterxml.jackson.annotation.JsonProperty;
import org.apache.commons.lang3.builder.ToStringBuilder;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IIdType;
@ -168,11 +169,13 @@ public class ResourceModifiedMessage implements IResourceMessage {
@Override
public String toString() {
String resourceId = myPayloadId;
if (resourceId == null) {
resourceId = myId;
return new ToStringBuilder(this)
.append("myId", myId)
.append("myOperationType", myOperationType)
.append("mySubscriptionId", mySubscriptionId)
// .append("myPayload", myPayload)
.append("myPayloadId", myPayloadId)
// .append("myPayloadDecoded", myPayloadDecoded)
.toString();
}
return "ResourceModified Message { " + myOperationType + ", " + resourceId + "}";
}
}

11
hapi-fhir-jpaserver-subscription/src/main/java/ca/uhn/fhir/jpa/subscription/module/cache/SubscriptionCanonicalizer.java vendored
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@ -29,11 +29,11 @@ import ca.uhn.fhir.model.api.ExtensionDt;
import ca.uhn.fhir.model.api.IPrimitiveDatatype;
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
import ca.uhn.fhir.rest.server.exceptions.PreconditionFailedException;
import org.hl7.fhir.dstu3.model.Subscription;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.instance.model.api.IBaseMetaType;
import org.hl7.fhir.instance.model.api.IBaseReference;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IPrimitiveType;
import org.hl7.fhir.r4.model.Extension;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
@ -292,4 +292,13 @@ public class SubscriptionCanonicalizer<S extends IBaseResource> {
}
meta.addTag().setSystem(SubscriptionConstants.EXT_SUBSCRIPTION_MATCHING_STRATEGY).setCode(value).setDisplay(display);
}
public String getSubscriptionStatus(IBaseResource theSubscription) {
final IPrimitiveType<?> status = myFhirContext.newTerser().getSingleValueOrNull(theSubscription, SubscriptionConstants.SUBSCRIPTION_STATUS, IPrimitiveType.class);
if (status == null) {
return null;
}
return status.getValueAsString();
}
}

6
hapi-fhir-jpaserver-subscription/src/main/java/ca/uhn/fhir/jpa/subscription/module/cache/SubscriptionConstants.java vendored
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@ -20,6 +20,8 @@ package ca.uhn.fhir.jpa.subscription.module.cache;
* #L%
*/
import org.hl7.fhir.instance.model.Subscription;
public class SubscriptionConstants {
/**
@ -90,4 +92,8 @@ public class SubscriptionConstants {
*/
public static final int DELIVERY_EXECUTOR_QUEUE_SIZE = 1000;
public static final String SUBSCRIPTION_STATUS = "Subscription.status";
public static final String SUBSCRIPTION_TYPE = "Subscription.channel.type";
public static final String REQUESTED_STATUS = Subscription.SubscriptionStatus.REQUESTED.toCode();
public static final String ACTIVE_STATUS = Subscription.SubscriptionStatus.ACTIVE.toCode();
}

1
hapi-fhir-jpaserver-subscription/src/main/java/ca/uhn/fhir/jpa/subscription/module/cache/SubscriptionLoader.java vendored
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@ -87,7 +87,6 @@ public class SubscriptionLoader {
ourLog.debug("Starting sync subscriptions");
SearchParameterMap map = new SearchParameterMap();
map.add(Subscription.SP_STATUS, new TokenOrListParam()
// TODO KHS perhaps we should only be requesting ACTIVE subscriptions here?...
.addOr(new TokenParam(null, Subscription.SubscriptionStatus.REQUESTED.toCode()))
.addOr(new TokenParam(null, Subscription.SubscriptionStatus.ACTIVE.toCode())));
map.setLoadSynchronousUpTo(SubscriptionConstants.MAX_SUBSCRIPTION_RESULTS);

7
hapi-fhir-jpaserver-subscription/src/main/java/ca/uhn/fhir/jpa/subscription/module/standalone/StandaloneSubscriptionMessageHandler.java
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@ -23,6 +23,8 @@ package ca.uhn.fhir.jpa.subscription.module.standalone;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.context.RuntimeResourceDefinition;
import ca.uhn.fhir.jpa.subscription.module.ResourceModifiedMessage;
import ca.uhn.fhir.jpa.subscription.module.cache.SubscriptionCanonicalizer;
import ca.uhn.fhir.jpa.subscription.module.cache.SubscriptionConstants;
import ca.uhn.fhir.jpa.subscription.module.cache.SubscriptionRegistry;
import ca.uhn.fhir.jpa.subscription.module.subscriber.ResourceModifiedJsonMessage;
import ca.uhn.fhir.jpa.subscription.module.subscriber.SubscriptionMatchingSubscriber;
@ -46,6 +48,8 @@ public class StandaloneSubscriptionMessageHandler implements MessageHandler {
SubscriptionMatchingSubscriber mySubscriptionMatchingSubscriber;
@Autowired
SubscriptionRegistry mySubscriptionRegistry;
@Autowired
SubscriptionCanonicalizer mySubscriptionCanonicalizer;
@Override
public void handleMessage(Message<?> theMessage) throws MessagingException {
@ -61,8 +65,11 @@ public class StandaloneSubscriptionMessageHandler implements MessageHandler {
RuntimeResourceDefinition resourceDef = myFhirContext.getResourceDefinition(resource);
if (resourceDef.getName().equals(ResourceTypeEnum.SUBSCRIPTION.getCode())) {
String status = mySubscriptionCanonicalizer.getSubscriptionStatus(resource);
if (SubscriptionConstants.ACTIVE_STATUS.equals(status)) {
mySubscriptionRegistry.registerSubscriptionUnlessAlreadyRegistered(resource);
}
}
mySubscriptionMatchingSubscriber.matchActiveSubscriptionsAndDeliver(theResourceModifiedMessage);
}
}

7
hapi-fhir-jpaserver-subscription/src/main/java/ca/uhn/fhir/jpa/subscription/module/subscriber/ResourceDeliveryJsonMessage.java
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@ -23,6 +23,7 @@ package ca.uhn.fhir.jpa.subscription.module.subscriber;
import com.fasterxml.jackson.annotation.JsonAutoDetect;
import com.fasterxml.jackson.annotation.JsonInclude;
import com.fasterxml.jackson.annotation.JsonProperty;
import org.apache.commons.lang3.builder.ToStringBuilder;
@JsonInclude(JsonInclude.Include.NON_NULL)
@JsonAutoDetect(creatorVisibility = JsonAutoDetect.Visibility.NONE, fieldVisibility = JsonAutoDetect.Visibility.NONE, getterVisibility = JsonAutoDetect.Visibility.NONE, isGetterVisibility = JsonAutoDetect.Visibility.NONE, setterVisibility = JsonAutoDetect.Visibility.NONE)
@ -54,4 +55,10 @@ public class ResourceDeliveryJsonMessage extends BaseJsonMessage<ResourceDeliver
myPayload = thePayload;
}
@Override
public String toString() {
return new ToStringBuilder(this)
.append("myPayload", myPayload)
.toString();
}
}

13
hapi-fhir-jpaserver-subscription/src/main/java/ca/uhn/fhir/jpa/subscription/module/subscriber/ResourceDeliveryMessage.java
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@ -28,6 +28,7 @@ import com.fasterxml.jackson.annotation.JsonIgnore;
import com.fasterxml.jackson.annotation.JsonInclude;
import com.fasterxml.jackson.annotation.JsonProperty;
import com.google.gson.Gson;
import org.apache.commons.lang3.builder.ToStringBuilder;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IIdType;
@ -114,4 +115,16 @@ public class ResourceDeliveryMessage implements IResourceMessage {
myPayloadId = thePayloadId.getValue();
}
}
@Override
public String toString() {
return new ToStringBuilder(this)
.append("mySubscription", mySubscription)
// .append("mySubscriptionString", mySubscriptionString)
.append("myPayloadString", myPayloadString)
.append("myPayload", myPayload)
.append("myPayloadId", myPayloadId)
.append("myOperationType", myOperationType)
.toString();
}
}

7
hapi-fhir-jpaserver-subscription/src/main/java/ca/uhn/fhir/jpa/subscription/module/subscriber/ResourceModifiedJsonMessage.java
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@ -24,6 +24,7 @@ import ca.uhn.fhir.jpa.subscription.module.ResourceModifiedMessage;
import com.fasterxml.jackson.annotation.JsonAutoDetect;
import com.fasterxml.jackson.annotation.JsonInclude;
import com.fasterxml.jackson.annotation.JsonProperty;
import org.apache.commons.lang3.builder.ToStringBuilder;
@JsonInclude(JsonInclude.Include.NON_NULL)
@JsonAutoDetect(creatorVisibility = JsonAutoDetect.Visibility.NONE, fieldVisibility = JsonAutoDetect.Visibility.NONE, getterVisibility = JsonAutoDetect.Visibility.NONE, isGetterVisibility = JsonAutoDetect.Visibility.NONE, setterVisibility = JsonAutoDetect.Visibility.NONE)
@ -55,4 +56,10 @@ public class ResourceModifiedJsonMessage extends BaseJsonMessage<ResourceModifie
myPayload = thePayload;
}
@Override
public String toString() {
return new ToStringBuilder(this)
.append("myPayload", myPayload)
.toString();
}
}

16
hapi-fhir-jpaserver-subscription/src/test/java/ca/uhn/fhir/jpa/subscription/module/BaseSubscriptionDstu3Test.java
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@ -2,6 +2,7 @@ package ca.uhn.fhir.jpa.subscription.module;
import ca.uhn.fhir.jpa.subscription.module.config.TestSubscriptionDstu3Config;
import ca.uhn.fhir.util.StopWatch;
import org.hl7.fhir.dstu3.model.Subscription;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.springframework.test.context.ContextConfiguration;
@ -12,6 +13,9 @@ import static org.junit.Assert.fail;
@ContextConfiguration(classes = {TestSubscriptionDstu3Config.class})
public abstract class BaseSubscriptionDstu3Test extends BaseSubscriptionTest {
private SubscriptionTestHelper mySubscriptionTestHelper = new SubscriptionTestHelper();
public static void waitForSize(int theTarget, List<?> theList) {
StopWatch sw = new StopWatch();
while (theList.size() != theTarget && sw.getMillis() <= 16000) {
@ -37,4 +41,16 @@ public abstract class BaseSubscriptionDstu3Test extends BaseSubscriptionTest {
fail("Size " + theList.size() + " is != target " + theTarget + " - Got: " + describeResults);
}
}
protected long nextId() {
return mySubscriptionTestHelper.nextId();
}
protected Subscription makeActiveSubscription(String theCriteria, String thePayload, String theEndpoint) {
return mySubscriptionTestHelper.makeActiveSubscription(theCriteria, thePayload, theEndpoint);
}
protected Subscription makeSubscriptionWithStatus(String theCriteria, String thePayload, String theEndpoint, Subscription.SubscriptionStatus status) {
return mySubscriptionTestHelper.makeSubscriptionWithStatus(theCriteria, thePayload, theEndpoint, status);
}
}

1
hapi-fhir-jpaserver-subscription/src/test/java/ca/uhn/fhir/jpa/subscription/module/BaseSubscriptionTest.java
View File

@ -44,5 +44,4 @@ public abstract class BaseSubscriptionTest {
myMockFhirClientSubscriptionProvider.setBundleProvider(theBundleProvider);
mySubscriptionLoader.doSyncSubscriptionsForUnitTest();
}
}

13
hapi-fhir-jpaserver-subscription/src/test/java/ca/uhn/fhir/jpa/subscription/module/FhirObjectPrinter.java
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@ -1,7 +1,5 @@
package ca.uhn.fhir.jpa.subscription.module;
import ca.uhn.fhir.jpa.subscription.module.subscriber.ResourceDeliveryJsonMessage;
import ca.uhn.fhir.jpa.subscription.module.subscriber.ResourceDeliveryMessage;
import org.hl7.fhir.instance.model.api.IBaseResource;
import java.util.function.Function;
@ -11,16 +9,7 @@ public class FhirObjectPrinter implements Function<Object, String> {
public String apply(Object object) {
if (object instanceof IBaseResource) {
IBaseResource resource = (IBaseResource) object;
return "Resource " + resource.getIdElement().getValue();
} else if (object instanceof ResourceDeliveryMessage) {
ResourceDeliveryMessage resourceDeliveryMessage = (ResourceDeliveryMessage) object;
// TODO KHS move this to ResourceModifiedMessage.toString()
return "ResourceDelivery Message { " + resourceDeliveryMessage.getPayloadId() + "}";
} else if (object instanceof ResourceDeliveryJsonMessage) {
ResourceDeliveryJsonMessage resourceDeliveryJsonMessage = (ResourceDeliveryJsonMessage) object;
// TODO KHS move this to ResourceModifiedMessage.toString()
ResourceDeliveryMessage resourceDeliveryMessage = resourceDeliveryJsonMessage.getPayload();
return "ResourceDeliveryJsonMessage Message { " + resourceDeliveryMessage.getPayloadId() + "}";
return resource.getClass().getSimpleName() + " { " + resource.getIdElement().getValue() + " }";
} else {
return object.toString();
}

13
hapi-fhir-jpaserver-subscription/src/test/java/ca/uhn/fhir/jpa/subscription/module/PointcutLatch.java
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@ -39,10 +39,10 @@ public class PointcutLatch implements IAnonymousLambdaHook {
throw new PointcutLatchException("setExpectedCount() called before previous awaitExpected() completed.");
}
createLatch(count);
ourLog.info("Expecting {} calls to {} latch", count, name);
}
private void createLatch(int count) {
ourLog.info("Creating new latch with count {}", count);
myFailure = new AtomicReference<>();
myCalledWith = new AtomicReference<>(new ArrayList<>());
myCountdownLatch = new CountDownLatch(count);
@ -76,17 +76,17 @@ public class PointcutLatch implements IAnonymousLambdaHook {
throw new AssertionError(error);
}
} finally {
destroyLatch();
clear();
}
assertEquals("Concurrency error: Latch switched while waiting.", retval, myCalledWith.get());
return retval;
}
public void expectNothing() {
destroyLatch();
clear();
}
private void destroyLatch() {
public void clear() {
myCountdownLatch = null;
}
@ -115,11 +115,8 @@ public class PointcutLatch implements IAnonymousLambdaHook {
if (myCalledWith.get() != null) {
myCalledWith.get().add(theArgs);
}
this.countdown();
}
ourLog.info("Called {} {} with {}", name, myCountdownLatch, hookParamsToString(theArgs));
private void countdown() {
ourLog.info("{} counting down {}", name, myCountdownLatch);
myCountdownLatch.countDown();
}

36
hapi-fhir-jpaserver-subscription/src/test/java/ca/uhn/fhir/jpa/subscription/module/SubscriptionTestHelper.java Normal file
View File

@ -0,0 +1,36 @@
package ca.uhn.fhir.jpa.subscription.module;
import org.hl7.fhir.dstu3.model.IdType;
import org.hl7.fhir.dstu3.model.Subscription;
import java.util.concurrent.atomic.AtomicLong;
public class SubscriptionTestHelper {
protected static AtomicLong idCounter = new AtomicLong();
public Subscription makeActiveSubscription(String theCriteria, String thePayload, String theEndpoint) {
return makeSubscriptionWithStatus(theCriteria, thePayload, theEndpoint, Subscription.SubscriptionStatus.ACTIVE);
}
public Subscription makeSubscriptionWithStatus(String theCriteria, String thePayload, String theEndpoint, Subscription.SubscriptionStatus status) {
Subscription subscription = new Subscription();
subscription.setReason("Monitor new neonatal function (note, age will be determined by the monitor)");
subscription.setStatus(status);
subscription.setCriteria(theCriteria);
IdType id = new IdType("Subscription", nextId());
subscription.setId(id);
Subscription.SubscriptionChannelComponent channel = new Subscription.SubscriptionChannelComponent();
channel.setType(Subscription.SubscriptionChannelType.RESTHOOK);
channel.setPayload(thePayload);
channel.setEndpoint(theEndpoint);
subscription.setChannel(channel);
return subscription;
}
public long nextId() {
return idCounter.incrementAndGet();
}
}

24
hapi-fhir-jpaserver-subscription/src/test/java/ca/uhn/fhir/jpa/subscription/module/standalone/BaseBlockingQueueSubscribableChannelDstu3Test.java
View File

@ -25,7 +25,6 @@ import org.eclipse.jetty.servlet.ServletContextHandler;
import org.eclipse.jetty.servlet.ServletHolder;
import org.hl7.fhir.dstu3.model.*;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IIdType;
import org.junit.After;
import org.junit.AfterClass;
import org.junit.Before;
@ -39,7 +38,6 @@ import javax.servlet.http.HttpServletRequest;
import java.util.ArrayList;
import java.util.Collections;
import java.util.List;
import java.util.concurrent.atomic.AtomicLong;
public abstract class BaseBlockingQueueSubscribableChannelDstu3Test extends BaseSubscriptionDstu3Test {
private static final Logger ourLog = LoggerFactory.getLogger(SubscriptionMatchingSubscriberTest.class);
@ -67,8 +65,6 @@ public abstract class BaseBlockingQueueSubscribableChannelDstu3Test extends Base
protected static List<Observation> ourUpdatedObservations = Collections.synchronizedList(Lists.newArrayList());
protected static List<String> ourContentTypes = Collections.synchronizedList(new ArrayList<>());
private static SubscribableChannel ourSubscribableChannel;
private List<IIdType> mySubscriptionIds = Collections.synchronizedList(new ArrayList<>());
protected static AtomicLong idCounter = new AtomicLong();
protected PointcutLatch mySubscriptionMatchingPost = new PointcutLatch(Pointcut.SUBSCRIPTION_AFTER_PERSISTED_RESOURCE_CHECKED);
protected PointcutLatch mySubscriptionActivatedPost = new PointcutLatch(Pointcut.SUBSCRIPTION_AFTER_ACTIVE_SUBSCRIPTION_REGISTERED);
@ -101,32 +97,16 @@ public abstract class BaseBlockingQueueSubscribableChannelDstu3Test extends Base
}
protected Subscription sendSubscription(String theCriteria, String thePayload, String theEndpoint) throws InterruptedException {
Subscription subscription = returnedActiveSubscription(theCriteria, thePayload, theEndpoint);
Subscription subscription = makeActiveSubscription(theCriteria, thePayload, theEndpoint);
mySubscriptionActivatedPost.setExpectedCount(1);
Subscription retval = sendResource(subscription);
mySubscriptionActivatedPost.awaitExpected();
return retval;
}
protected Subscription returnedActiveSubscription(String theCriteria, String thePayload, String theEndpoint) {
Subscription subscription = new Subscription();
subscription.setReason("Monitor new neonatal function (note, age will be determined by the monitor)");
subscription.setStatus(Subscription.SubscriptionStatus.ACTIVE);
subscription.setCriteria(theCriteria);
IdType id = new IdType("Subscription", idCounter.incrementAndGet());
subscription.setId(id);
Subscription.SubscriptionChannelComponent channel = new Subscription.SubscriptionChannelComponent();
channel.setType(Subscription.SubscriptionChannelType.RESTHOOK);
channel.setPayload(thePayload);
channel.setEndpoint(theEndpoint);
subscription.setChannel(channel);
return subscription;
}
protected Observation sendObservation(String code, String system) throws InterruptedException {
Observation observation = new Observation();
IdType id = new IdType("Observation", idCounter.incrementAndGet());
IdType id = new IdType("Observation", nextId());
observation.setId(id);
CodeableConcept codeableConcept = new CodeableConcept();

48
hapi-fhir-jpaserver-subscription/src/test/java/ca/uhn/fhir/jpa/subscription/module/standalone/StandaloneSubscriptionMessageHandlerTest.java Normal file
View File

@ -0,0 +1,48 @@
package ca.uhn.fhir.jpa.subscription.module.standalone;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.jpa.subscription.module.BaseSubscriptionDstu3Test;
import ca.uhn.fhir.jpa.subscription.module.ResourceModifiedMessage;
import ca.uhn.fhir.jpa.subscription.module.cache.SubscriptionRegistry;
import ca.uhn.fhir.jpa.subscription.module.subscriber.ResourceModifiedJsonMessage;
import ca.uhn.fhir.jpa.subscription.module.subscriber.SubscriptionMatchingSubscriber;
import org.hl7.fhir.dstu3.model.Subscription;
import org.junit.Test;
import org.mockito.Mockito;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.boot.test.mock.mockito.MockBean;
import static org.mockito.ArgumentMatchers.any;
import static org.mockito.Mockito.never;
public class StandaloneSubscriptionMessageHandlerTest extends BaseSubscriptionDstu3Test {
@Autowired
StandaloneSubscriptionMessageHandler myStandaloneSubscriptionMessageHandler;
@Autowired
FhirContext myFhirContext;
@MockBean
SubscriptionMatchingSubscriber mySubscriptionMatchingSubscriber;
@MockBean
SubscriptionRegistry mySubscriptionRegistry;
@Test
public void activeSubscriptionIsRegistered() {
Subscription subscription = makeActiveSubscription("testCriteria", "testPayload", "testEndpoint");
ResourceModifiedMessage message = new ResourceModifiedMessage(myFhirContext, subscription, ResourceModifiedMessage.OperationTypeEnum.CREATE);
ResourceModifiedJsonMessage jsonMessage = new ResourceModifiedJsonMessage(message);
myStandaloneSubscriptionMessageHandler.handleMessage(jsonMessage);
Mockito.verify(mySubscriptionRegistry).registerSubscriptionUnlessAlreadyRegistered(any());
Mockito.verify(mySubscriptionMatchingSubscriber).matchActiveSubscriptionsAndDeliver(any());
}
@Test
public void requestedSubscriptionNotRegistered() {
Subscription subscription = makeSubscriptionWithStatus("testCriteria", "testPayload", "testEndpoint", Subscription.SubscriptionStatus.REQUESTED);
ResourceModifiedMessage message = new ResourceModifiedMessage(myFhirContext, subscription, ResourceModifiedMessage.OperationTypeEnum.CREATE);
ResourceModifiedJsonMessage jsonMessage = new ResourceModifiedJsonMessage(message);
myStandaloneSubscriptionMessageHandler.handleMessage(jsonMessage);
Mockito.verify(mySubscriptionRegistry, never()).registerSubscriptionUnlessAlreadyRegistered(any());
Mockito.verify(mySubscriptionMatchingSubscriber).matchActiveSubscriptionsAndDeliver(any());
}
}

10
hapi-fhir-jpaserver-subscription/src/test/java/ca/uhn/fhir/jpa/subscription/module/standalone/SubscriptionLoaderFhirClientTest.java
View File

@ -12,9 +12,7 @@ import java.util.List;
import java.util.concurrent.CountDownLatch;
import java.util.concurrent.TimeUnit;
import static org.hamcrest.Matchers.lessThan;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertThat;
public class SubscriptionLoaderFhirClientTest extends BaseBlockingQueueSubscribableChannelDstu3Test {
@Test
@ -28,8 +26,8 @@ public class SubscriptionLoaderFhirClientTest extends BaseBlockingQueueSubscriba
String criteria2 = "Observation?code=SNOMED-CT|" + myCode + "111&_format=xml";
List<Subscription> subs = new ArrayList<>();
subs.add(returnedActiveSubscription(criteria1, payload, ourListenerServerBase));
subs.add(returnedActiveSubscription(criteria2, payload, ourListenerServerBase));
subs.add(makeActiveSubscription(criteria1, payload, ourListenerServerBase));
subs.add(makeActiveSubscription(criteria2, payload, ourListenerServerBase));
IBundleProvider bundle = new SimpleBundleProvider(new ArrayList<>(subs), "uuid");
initSubscriptionLoader(bundle);
@ -53,8 +51,8 @@ public class SubscriptionLoaderFhirClientTest extends BaseBlockingQueueSubscriba
String criteria2 = "Observation?code=SNOMED-CT|" + myCode + "111&_format=xml";
List<Subscription> subs = new ArrayList<>();
subs.add(returnedActiveSubscription(criteria1, payload, ourListenerServerBase).setStatus(Subscription.SubscriptionStatus.REQUESTED));
subs.add(returnedActiveSubscription(criteria2, payload, ourListenerServerBase).setStatus(Subscription.SubscriptionStatus.REQUESTED));
subs.add(makeActiveSubscription(criteria1, payload, ourListenerServerBase).setStatus(Subscription.SubscriptionStatus.REQUESTED));
subs.add(makeActiveSubscription(criteria2, payload, ourListenerServerBase).setStatus(Subscription.SubscriptionStatus.REQUESTED));
IBundleProvider bundle = new SimpleBundleProvider(new ArrayList<>(subs), "uuid");
initSubscriptionLoader(bundle);

4
hapi-fhir-jpaserver-subscription/src/test/java/ca/uhn/fhir/jpa/subscription/module/standalone/SubscriptionLoaderTest.java
View File

@ -40,8 +40,8 @@ public class SubscriptionLoaderTest extends BaseBlockingQueueSubscribableChannel
String criteria2 = "Observation?code=SNOMED-CT|" + myCode + "111&_format=xml";
List<Subscription> subs = new ArrayList<>();
subs.add(returnedActiveSubscription(criteria1, payload, ourListenerServerBase));
subs.add(returnedActiveSubscription(criteria2, payload, ourListenerServerBase));
subs.add(makeActiveSubscription(criteria1, payload, ourListenerServerBase));
subs.add(makeActiveSubscription(criteria2, payload, ourListenerServerBase));
IBundleProvider bundle = new SimpleBundleProvider(new ArrayList<>(subs), "uuid");
initSubscriptionLoader(bundle);

2
hapi-fhir-jpaserver-subscription/src/test/java/ca/uhn/fhir/jpa/subscription/module/subscriber/SubscriptionCheckingSubscriberTest.java
View File

@ -95,7 +95,7 @@ public class SubscriptionCheckingSubscriberTest extends BaseBlockingQueueSubscri
ourObservationListener.setExpectedCount(1);
Observation observation = new Observation();
IdType id = new IdType("Observation", idCounter.incrementAndGet());
IdType id = new IdType("Observation", nextId());
observation.setId(id);
// Reference has display only!

2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-autoconfigure/pom.xml
View File

@ -121,7 +121,7 @@
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-dependencies</artifactId>
<version>${spring-boot.version}</version>
<version>${spring_boot_version}</version>
<type>pom</type>
<scope>import</scope>
</dependency>

2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/pom.xml
View File

@ -23,7 +23,7 @@
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-dependencies</artifactId>
<version>${spring-boot.version}</version>
<version>${spring_boot_version}</version>
<type>pom</type>
<scope>import</scope>
</dependency>

2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-starter/pom.xml
View File

@ -30,7 +30,7 @@
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-dependencies</artifactId>
<version>${spring-boot.version}</version>
<version>${spring_boot_version}</version>
<type>pom</type>
<scope>import</scope>
</dependency>

2
hapi-fhir-spring-boot/pom.xml
View File

@ -23,7 +23,7 @@
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-dependencies</artifactId>
<version>${spring-boot.version}</version>
<version>${spring_boot_version}</version>
<type>pom</type>
<scope>import</scope>
</dependency>

426
hapi-fhir-structures-dstu3/src/test/java/ca/uhn/fhir/parser/jsonlike/JsonLikeParserDstu3Test.java Normal file
View File

@ -0,0 +1,426 @@
package ca.uhn.fhir.parser.jsonlike;
import java.io.IOException;
import java.io.StringReader;
import java.math.BigDecimal;
import java.math.BigInteger;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Stack;
import org.apache.commons.io.IOUtils;
import org.hl7.fhir.dstu3.model.Bundle;
import org.hl7.fhir.dstu3.model.Extension;
import org.hl7.fhir.dstu3.model.Patient;
import org.hl7.fhir.dstu3.model.Reference;
import org.junit.AfterClass;
import org.junit.Assert;
import org.junit.Test;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.parser.IJsonLikeParser;
import ca.uhn.fhir.parser.json.GsonStructure;
import ca.uhn.fhir.parser.json.JsonLikeStructure;
import ca.uhn.fhir.parser.json.JsonLikeWriter;
import ca.uhn.fhir.util.TestUtil;
public class JsonLikeParserDstu3Test {
private static FhirContext ourCtx = FhirContext.forDstu3();
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(JsonLikeParserDstu3Test.class);
/**
* Test for JSON Parser with user-supplied JSON-like structure (use default GSON)
*/
@Test
public void testJsonLikeParseAndEncodeBundleFromXmlToJson() throws Exception {
String content = IOUtils.toString(JsonLikeParserDstu3Test.class.getResourceAsStream("/bundle_with_woven_obs.xml"));
Bundle parsed = ourCtx.newXmlParser().parseResource(Bundle.class, content);
String encoded = ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(parsed);
ourLog.info(encoded);
JsonLikeStructure jsonLikeStructure = new GsonStructure();
jsonLikeStructure.load(new StringReader(encoded));
IJsonLikeParser jsonLikeparser = (IJsonLikeParser)ourCtx.newJsonParser();
Bundle bundle = jsonLikeparser.parseResource(Bundle.class, jsonLikeStructure);
}
/**
* Test JSON-Like writer using custom stream writer
*
*/
@Test
public void testJsonLikeParseWithCustomJSONStreamWriter() throws Exception {
String refVal = "http://my.org/FooBar";
Patient fhirPat = new Patient();
fhirPat.addExtension().setUrl("x1").setValue(new Reference(refVal));
IJsonLikeParser jsonLikeParser = (IJsonLikeParser)ourCtx.newJsonParser();
JsonLikeMapWriter jsonLikeWriter = new JsonLikeMapWriter();
jsonLikeParser.encodeResourceToJsonLikeWriter(fhirPat, jsonLikeWriter);
Map<String,Object> jsonLikeMap = jsonLikeWriter.getResultMap();
System.out.println("encoded map: " + jsonLikeMap.toString());
Assert.assertNotNull("Encoded resource missing 'resourceType' element", jsonLikeMap.get("resourceType"));
Assert.assertEquals("Expecting 'resourceType'='Patient'; found '"+jsonLikeMap.get("resourceType")+"'", jsonLikeMap.get("resourceType"), "Patient");
Assert.assertNotNull("Encoded resource missing 'extension' element", jsonLikeMap.get("extension"));
Assert.assertTrue("'extension' element is not a List", (jsonLikeMap.get("extension") instanceof List));
List<Object> extensions = (List<Object>)jsonLikeMap.get("extension");
Assert.assertEquals("'extnesion' array has more than one entry", 1, extensions.size());
Assert.assertTrue("'extension' array entry is not a Map", (extensions.get(0) instanceof Map));
Map<String, Object> extension = (Map<String,Object>)extensions.get(0);
Assert.assertNotNull("'extension' entry missing 'url' member", extension.get("url"));
Assert.assertTrue("'extension' entry 'url' member is not a String", (extension.get("url") instanceof String));
Assert.assertEquals("Expecting '/extension[]/url' = 'x1'; found '"+extension.get("url")+"'", "x1", (String)extension.get("url"));
}
@AfterClass
public static void afterClassClearContext() {
TestUtil.clearAllStaticFieldsForUnitTest();
}
public static class JsonLikeMapWriter extends JsonLikeWriter {
private Map<String,Object> target;
private static class Block {
private BlockType type;
private String name;
private Map<String,Object> object;
private List<Object> array;
public Block(BlockType type) {
this.type = type;
}
public BlockType getType() {
return type;
}
public String getName() {
return name;
}
public void setName(String currentName) {
this.name = currentName;
}
public Map<String, Object> getObject() {
return object;
}
public void setObject(Map<String, Object> currentObject) {
this.object = currentObject;
}
public List<Object> getArray() {
return array;
}
public void setArray(List<Object> currentArray) {
this.array = currentArray;
}
}
private enum BlockType {
NONE, OBJECT, ARRAY
}
private Block currentBlock = new Block(BlockType.NONE);
private Stack<Block> blockStack = new Stack<Block>();
public JsonLikeMapWriter () {
super();
}
public Map<String,Object> getResultMap() {
return target;
}
public void setResultMap(Map<String,Object> target) {
this.target = target;
}
@Override
public JsonLikeWriter init() throws IOException {
if (target != null) {
target.clear();
}
currentBlock = new Block(BlockType.NONE);
blockStack.clear();
return this;
}
@Override
public JsonLikeWriter flush() throws IOException {
if (currentBlock.getType() != BlockType.NONE) {
throw new IOException("JsonLikeStreamWriter.flush() called but JSON document is not finished");
}
return this;
}
@Override
public void close() {
// nothing to do
}
@Override
public JsonLikeWriter beginObject() throws IOException {
if (currentBlock.getType() == BlockType.OBJECT) {
throw new IOException("Unnamed JSON elements can only be created in JSON arrays");
}
Map<String,Object> newObject = null;
if (currentBlock.getType() == BlockType.NONE) {
if (null == target) {
// for this test, we don't care about ordering of map elements
// target = new EntryOrderedMap<String,Object>();
target = new HashMap<String,Object>();
}
newObject = target;
} else {
// for this test, we don't care about ordering of map elements
// newObject = new EntryOrderedMap<String,Object>();
newObject = new HashMap<String,Object>();
}
blockStack.push(currentBlock);
currentBlock = new Block(BlockType.OBJECT);
currentBlock.setObject(newObject);
return this;
}
@Override
public JsonLikeWriter beginArray() throws IOException {
if (currentBlock.getType() == BlockType.NONE) {
throw new IOException("JsonLikeStreamWriter.beginArray() called but only beginObject() is allowed here.");
}
blockStack.push(currentBlock);
currentBlock = new Block(BlockType.ARRAY);
currentBlock.setArray(new ArrayList<Object>());
return this;
}
@Override
public JsonLikeWriter beginObject(String name) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
blockStack.push(currentBlock);
currentBlock = new Block(BlockType.OBJECT);
currentBlock.setName(name);
// for this test, we don't care about ordering of map elements
// currentBlock.setObject(new EntryOrderedMap<String,Object>());
currentBlock.setObject(new HashMap<String,Object>());
return this;
}
@Override
public JsonLikeWriter beginArray(String name) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
blockStack.push(currentBlock);
currentBlock = new Block(BlockType.ARRAY);
currentBlock.setName(name);
currentBlock.setArray(new ArrayList<Object>());
return this;
}
@Override
public JsonLikeWriter write(String value) throws IOException {
if (currentBlock.getType() == BlockType.OBJECT) {
throw new IOException("Unnamed JSON elements can only be created in JSON arrays");
}
currentBlock.getArray().add(value);
return this;
}
@Override
public JsonLikeWriter write(BigInteger value) throws IOException {
if (currentBlock.getType() == BlockType.OBJECT) {
throw new IOException("Unnamed JSON elements can only be created in JSON arrays");
}
currentBlock.getArray().add(value);
return this;
}
@Override
public JsonLikeWriter write(BigDecimal value) throws IOException {
if (currentBlock.getType() == BlockType.OBJECT) {
throw new IOException("Unnamed JSON elements can only be created in JSON arrays");
}
currentBlock.getArray().add(value);
return this;
}
@Override
public JsonLikeWriter write(long value) throws IOException {
if (currentBlock.getType() == BlockType.OBJECT) {
throw new IOException("Unnamed JSON elements can only be created in JSON arrays");
}
currentBlock.getArray().add(Long.valueOf(value));
return this;
}
@Override
public JsonLikeWriter write(double value) throws IOException {
if (currentBlock.getType() == BlockType.OBJECT) {
throw new IOException("Unnamed JSON elements can only be created in JSON arrays");
}
currentBlock.getArray().add(Double.valueOf(value));
return this;
}
@Override
public JsonLikeWriter write(Boolean value) throws IOException {
if (currentBlock.getType() == BlockType.OBJECT) {
throw new IOException("Unnamed JSON elements can only be created in JSON arrays");
}
currentBlock.getArray().add(value);
return this;
}
@Override
public JsonLikeWriter write(boolean value) throws IOException {
if (currentBlock.getType() == BlockType.OBJECT) {
throw new IOException("Unnamed JSON elements can only be created in JSON arrays");
}
currentBlock.getArray().add(Boolean.valueOf(value));
return this;
}
@Override
public JsonLikeWriter writeNull() throws IOException {
if (currentBlock.getType() == BlockType.OBJECT) {
throw new IOException("Unnamed JSON elements can only be created in JSON arrays");
}
currentBlock.getArray().add(null);
return this;
}
@Override
public JsonLikeWriter write(String name, String value) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
currentBlock.getObject().put(name, value);
return this;
}
@Override
public JsonLikeWriter write(String name, BigInteger value) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
currentBlock.getObject().put(name, value);
return this;
}
@Override
public JsonLikeWriter write(String name, BigDecimal value) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
currentBlock.getObject().put(name, value);
return this;
}
@Override
public JsonLikeWriter write(String name, long value) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
currentBlock.getObject().put(name, Long.valueOf(value));
return this;
}
@Override
public JsonLikeWriter write(String name, double value) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
currentBlock.getObject().put(name, Double.valueOf(value));
return this;
}
@Override
public JsonLikeWriter write(String name, Boolean value) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
currentBlock.getObject().put(name, value);
return this;
}
@Override
public JsonLikeWriter write(String name, boolean value) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
currentBlock.getObject().put(name, Boolean.valueOf(value));
return this;
}
@Override
public JsonLikeWriter writeNull(String name) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
currentBlock.getObject().put(name, null);
return this;
}
@Override
public JsonLikeWriter endObject() throws IOException {
if (currentBlock.getType() == BlockType.NONE) {
ourLog.error("JsonLikeStreamWriter.endObject(); called with no active JSON document");
} else {
if (currentBlock.getType() != BlockType.OBJECT) {
ourLog.error("JsonLikeStreamWriter.endObject(); called outside a JSON object. (Use endArray() instead?)");
}
endBlock();
}
return this;
}
@Override
public JsonLikeWriter endArray() throws IOException {
if (currentBlock.getType() == BlockType.NONE) {
ourLog.error("JsonLikeStreamWriter.endArray(); called with no active JSON document");
} else {
if (currentBlock.getType() != BlockType.ARRAY) {
ourLog.error("JsonLikeStreamWriter.endArray(); called outside a JSON array. (Use endObject() instead?)");
}
endBlock();
}
return this;
}
@Override
public JsonLikeWriter endBlock() throws IOException {
if (currentBlock.getType() == BlockType.NONE) {
ourLog.error("JsonLikeStreamWriter.endBlock(); called with no active JSON document");
} else {
Object toPut = null;
if (currentBlock.getType() == BlockType.ARRAY) {
toPut = currentBlock.getArray();
} else {
toPut = currentBlock.getObject();
}
Block parentBlock = blockStack.pop();
if (parentBlock.getType() == BlockType.OBJECT) {
parentBlock.getObject().put(currentBlock.getName(), toPut);
} else
if (parentBlock.getType() == BlockType.ARRAY) {
parentBlock.getArray().add(toPut);
}
currentBlock = parentBlock;
}
return this;
}
}
}

732
hapi-fhir-structures-r4/src/test/java/ca/uhn/fhir/parser/jsonlike/JsonLikeParserTest.java Normal file
View File

@ -0,0 +1,732 @@
package ca.uhn.fhir.parser.jsonlike;
import java.io.IOException;
import java.io.Reader;
import java.io.StringReader;
import java.io.Writer;
import java.math.BigDecimal;
import java.math.BigInteger;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.LinkedHashMap;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.Stack;
import org.apache.commons.io.IOUtils;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.r4.model.IntegerType;
import org.hl7.fhir.r4.model.Patient;
import org.hl7.fhir.r4.model.Reference;
import org.hl7.fhir.r4.model.Extension;
import org.junit.AfterClass;
import org.junit.Assert;
import org.junit.Test;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.parser.DataFormatException;
import ca.uhn.fhir.parser.IJsonLikeParser;
import ca.uhn.fhir.parser.IParser;
import ca.uhn.fhir.parser.json.GsonStructure;
import ca.uhn.fhir.parser.json.JsonLikeArray;
import ca.uhn.fhir.parser.json.JsonLikeObject;
import ca.uhn.fhir.parser.json.JsonLikeStructure;
import ca.uhn.fhir.parser.json.JsonLikeValue;
import ca.uhn.fhir.parser.json.JsonLikeWriter;
import ca.uhn.fhir.parser.json.JsonLikeValue.ScalarType;
import ca.uhn.fhir.parser.json.JsonLikeValue.ValueType;
import ca.uhn.fhir.parser.view.ExtPatient;
import ca.uhn.fhir.util.TestUtil;
public class JsonLikeParserTest {
private static FhirContext ourCtx = FhirContext.forR4();
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(JsonLikeParserTest.class);
/**
* Test for JSON Parser with user-supplied JSON-like structure (use default GSON)
*/
@Test
public void testJsonLikeParseAndEncodeResourceFromXmlToJson() throws Exception {
String content = IOUtils.toString(JsonLikeParserTest.class.getResourceAsStream("/extension-on-line.txt"));
IBaseResource parsed = ourCtx.newJsonParser().parseResource(content);
String encoded = ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(parsed);
ourLog.info(encoded);
JsonLikeStructure jsonLikeStructure = new GsonStructure();
jsonLikeStructure.load(new StringReader(encoded));
IJsonLikeParser jsonLikeparser = (IJsonLikeParser)ourCtx.newJsonParser();
IBaseResource resource = jsonLikeparser.parseResource(jsonLikeStructure);
Assert.assertEquals("reparsed resource classes not equal", parsed.getClass().getName(), resource.getClass().getName());
}
/**
* Test JSON-Like writer using custom stream writer
*
*/
@Test
public void testJsonLikeParseWithCustomJSONStreamWriter() throws Exception {
String refVal = "http://my.org/FooBar";
Patient fhirPat = new Patient();
fhirPat.addExtension().setUrl("x1").setValue(new Reference(refVal));
IJsonLikeParser jsonLikeParser = (IJsonLikeParser)ourCtx.newJsonParser();
JsonLikeMapWriter jsonLikeWriter = new JsonLikeMapWriter();
jsonLikeParser.encodeResourceToJsonLikeWriter(fhirPat, jsonLikeWriter);
Map<String,Object> jsonLikeMap = jsonLikeWriter.getResultMap();
System.out.println("encoded map: " + jsonLikeMap.toString());
Assert.assertNotNull("Encoded resource missing 'resourceType' element", jsonLikeMap.get("resourceType"));
Assert.assertEquals("Expecting 'resourceType'='Patient'; found '"+jsonLikeMap.get("resourceType")+"'", jsonLikeMap.get("resourceType"), "Patient");
Assert.assertNotNull("Encoded resource missing 'extension' element", jsonLikeMap.get("extension"));
Assert.assertTrue("'extension' element is not a List", (jsonLikeMap.get("extension") instanceof List));
List<Object> extensions = (List<Object>)jsonLikeMap.get("extension");
Assert.assertEquals("'extnesion' array has more than one entry", 1, extensions.size());
Assert.assertTrue("'extension' array entry is not a Map", (extensions.get(0) instanceof Map));
Map<String, Object> extension = (Map<String,Object>)extensions.get(0);
Assert.assertNotNull("'extension' entry missing 'url' member", extension.get("url"));
Assert.assertTrue("'extension' entry 'url' member is not a String", (extension.get("url") instanceof String));
Assert.assertEquals("Expecting '/extension[]/url' = 'x1'; found '"+extension.get("url")+"'", "x1", (String)extension.get("url"));
}
/**
* Repeat the "View" tests with custom JSON-Like structure
*/
@Test
public void testViewJson() throws Exception {
ExtPatient src = new ExtPatient();
src.addIdentifier().setSystem("urn:sys").setValue("id1");
src.addIdentifier().setSystem("urn:sys").setValue("id2");
src.getExt().setValue(100);
src.getModExt().setValue(200);
IJsonLikeParser jsonLikeParser = (IJsonLikeParser)ourCtx.newJsonParser();
JsonLikeMapWriter jsonLikeWriter = new JsonLikeMapWriter();
jsonLikeParser.encodeResourceToJsonLikeWriter(src, jsonLikeWriter);
Map<String,Object> jsonLikeMap = jsonLikeWriter.getResultMap();
ourLog.info("encoded: "+jsonLikeMap);
JsonLikeStructure jsonStructure = new JsonLikeMapStructure(jsonLikeMap);
IJsonLikeParser parser = (IJsonLikeParser)ourCtx.newJsonParser();
Patient nonExt = parser.parseResource(Patient.class, jsonStructure);
Assert.assertEquals(Patient.class, nonExt.getClass());
Assert.assertEquals("urn:sys", nonExt.getIdentifier().get(0).getSystem());
Assert.assertEquals("id1", nonExt.getIdentifier().get(0).getValue());
Assert.assertEquals("urn:sys", nonExt.getIdentifier().get(1).getSystem());
Assert.assertEquals("id2", nonExt.getIdentifier().get(1).getValue());
List<Extension> ext = nonExt.getExtensionsByUrl("urn:ext");
Assert.assertEquals(1, ext.size());
Assert.assertEquals("urn:ext", ext.get(0).getUrl());
Assert.assertEquals(IntegerType.class, ext.get(0).getValueAsPrimitive().getClass());
Assert.assertEquals("100", ext.get(0).getValueAsPrimitive().getValueAsString());
List<Extension> modExt = nonExt.getExtensionsByUrl("urn:modExt");
Assert.assertEquals(1, modExt.size());
Assert.assertEquals("urn:modExt", modExt.get(0).getUrl());
Assert.assertEquals(IntegerType.class, modExt.get(0).getValueAsPrimitive().getClass());
Assert.assertEquals("200", modExt.get(0).getValueAsPrimitive().getValueAsString());
ExtPatient va = ourCtx.newViewGenerator().newView(nonExt, ExtPatient.class);
Assert.assertEquals("urn:sys", va.getIdentifier().get(0).getSystem());
Assert.assertEquals("id1", va.getIdentifier().get(0).getValue());
Assert.assertEquals("urn:sys", va.getIdentifier().get(1).getSystem());
Assert.assertEquals("id2", va.getIdentifier().get(1).getValue());
Assert.assertEquals(100, va.getExt().getValue().intValue());
Assert.assertEquals(200, va.getModExt().getValue().intValue());
Assert.assertEquals(0, va.getExtension().size());
}
@AfterClass
public static void afterClassClearContext() {
TestUtil.clearAllStaticFieldsForUnitTest();
}
public static class JsonLikeMapWriter extends JsonLikeWriter {
private Map<String,Object> target;
private static class Block {
private BlockType type;
private String name;
private Map<String,Object> object;
private List<Object> array;
public Block(BlockType type) {
this.type = type;
}
public BlockType getType() {
return type;
}
public String getName() {
return name;
}
public void setName(String currentName) {
this.name = currentName;
}
public Map<String, Object> getObject() {
return object;
}
public void setObject(Map<String, Object> currentObject) {
this.object = currentObject;
}
public List<Object> getArray() {
return array;
}
public void setArray(List<Object> currentArray) {
this.array = currentArray;
}
}
private enum BlockType {
NONE, OBJECT, ARRAY
}
private Block currentBlock = new Block(BlockType.NONE);
private Stack<Block> blockStack = new Stack<Block>();
public JsonLikeMapWriter () {
super();
}
public Map<String,Object> getResultMap() {
return target;
}
public void setResultMap(Map<String,Object> target) {
this.target = target;
}
@Override
public JsonLikeWriter init() throws IOException {
if (target != null) {
target.clear();
}
currentBlock = new Block(BlockType.NONE);
blockStack.clear();
return this;
}
@Override
public JsonLikeWriter flush() throws IOException {
if (currentBlock.getType() != BlockType.NONE) {
throw new IOException("JsonLikeStreamWriter.flush() called but JSON document is not finished");
}
return this;
}
@Override
public void close() {
// nothing to do
}
@Override
public JsonLikeWriter beginObject() throws IOException {
if (currentBlock.getType() == BlockType.OBJECT) {
throw new IOException("Unnamed JSON elements can only be created in JSON arrays");
}
Map<String,Object> newObject = null;
if (currentBlock.getType() == BlockType.NONE) {
if (null == target) {
// for this test, we don't care about ordering of map elements
// target = new EntryOrderedMap<String,Object>();
target = new HashMap<String,Object>();
}
newObject = target;
} else {
// for this test, we don't care about ordering of map elements
// newObject = new EntryOrderedMap<String,Object>();
newObject = new HashMap<String,Object>();
}
blockStack.push(currentBlock);
currentBlock = new Block(BlockType.OBJECT);
currentBlock.setObject(newObject);
return this;
}
@Override
public JsonLikeWriter beginArray() throws IOException {
if (currentBlock.getType() == BlockType.NONE) {
throw new IOException("JsonLikeStreamWriter.beginArray() called but only beginObject() is allowed here.");
}
blockStack.push(currentBlock);
currentBlock = new Block(BlockType.ARRAY);
currentBlock.setArray(new ArrayList<Object>());
return this;
}
@Override
public JsonLikeWriter beginObject(String name) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
blockStack.push(currentBlock);
currentBlock = new Block(BlockType.OBJECT);
currentBlock.setName(name);
// for this test, we don't care about ordering of map elements
// currentBlock.setObject(new EntryOrderedMap<String,Object>());
currentBlock.setObject(new HashMap<String,Object>());
return this;
}
@Override
public JsonLikeWriter beginArray(String name) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
blockStack.push(currentBlock);
currentBlock = new Block(BlockType.ARRAY);
currentBlock.setName(name);
currentBlock.setArray(new ArrayList<Object>());
return this;
}
@Override
public JsonLikeWriter write(String value) throws IOException {
if (currentBlock.getType() == BlockType.OBJECT) {
throw new IOException("Unnamed JSON elements can only be created in JSON arrays");
}
currentBlock.getArray().add(value);
return this;
}
@Override
public JsonLikeWriter write(BigInteger value) throws IOException {
if (currentBlock.getType() == BlockType.OBJECT) {
throw new IOException("Unnamed JSON elements can only be created in JSON arrays");
}
currentBlock.getArray().add(value);
return this;
}
@Override
public JsonLikeWriter write(BigDecimal value) throws IOException {
if (currentBlock.getType() == BlockType.OBJECT) {
throw new IOException("Unnamed JSON elements can only be created in JSON arrays");
}
currentBlock.getArray().add(value);
return this;
}
@Override
public JsonLikeWriter write(long value) throws IOException {
if (currentBlock.getType() == BlockType.OBJECT) {
throw new IOException("Unnamed JSON elements can only be created in JSON arrays");
}
currentBlock.getArray().add(Long.valueOf(value));
return this;
}
@Override
public JsonLikeWriter write(double value) throws IOException {
if (currentBlock.getType() == BlockType.OBJECT) {
throw new IOException("Unnamed JSON elements can only be created in JSON arrays");
}
currentBlock.getArray().add(Double.valueOf(value));
return this;
}
@Override
public JsonLikeWriter write(Boolean value) throws IOException {
if (currentBlock.getType() == BlockType.OBJECT) {
throw new IOException("Unnamed JSON elements can only be created in JSON arrays");
}
currentBlock.getArray().add(value);
return this;
}
@Override
public JsonLikeWriter write(boolean value) throws IOException {
if (currentBlock.getType() == BlockType.OBJECT) {
throw new IOException("Unnamed JSON elements can only be created in JSON arrays");
}
currentBlock.getArray().add(Boolean.valueOf(value));
return this;
}
@Override
public JsonLikeWriter writeNull() throws IOException {
if (currentBlock.getType() == BlockType.OBJECT) {
throw new IOException("Unnamed JSON elements can only be created in JSON arrays");
}
currentBlock.getArray().add(null);
return this;
}
@Override
public JsonLikeWriter write(String name, String value) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
currentBlock.getObject().put(name, value);
return this;
}
@Override
public JsonLikeWriter write(String name, BigInteger value) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
currentBlock.getObject().put(name, value);
return this;
}
@Override
public JsonLikeWriter write(String name, BigDecimal value) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
currentBlock.getObject().put(name, value);
return this;
}
@Override
public JsonLikeWriter write(String name, long value) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
currentBlock.getObject().put(name, Long.valueOf(value));
return this;
}
@Override
public JsonLikeWriter write(String name, double value) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
currentBlock.getObject().put(name, Double.valueOf(value));
return this;
}
@Override
public JsonLikeWriter write(String name, Boolean value) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
currentBlock.getObject().put(name, value);
return this;
}
@Override
public JsonLikeWriter write(String name, boolean value) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
currentBlock.getObject().put(name, Boolean.valueOf(value));
return this;
}
@Override
public JsonLikeWriter writeNull(String name) throws IOException {
if (currentBlock.getType() == BlockType.ARRAY) {
throw new IOException("Named JSON elements can only be created in JSON objects");
}
currentBlock.getObject().put(name, null);
return this;
}
@Override
public JsonLikeWriter endObject() throws IOException {
if (currentBlock.getType() == BlockType.NONE) {
ourLog.error("JsonLikeStreamWriter.endObject(); called with no active JSON document");
} else {
if (currentBlock.getType() != BlockType.OBJECT) {
ourLog.error("JsonLikeStreamWriter.endObject(); called outside a JSON object. (Use endArray() instead?)");
}
endBlock();
}
return this;
}
@Override
public JsonLikeWriter endArray() throws IOException {
if (currentBlock.getType() == BlockType.NONE) {
ourLog.error("JsonLikeStreamWriter.endArray(); called with no active JSON document");
} else {
if (currentBlock.getType() != BlockType.ARRAY) {
ourLog.error("JsonLikeStreamWriter.endArray(); called outside a JSON array. (Use endObject() instead?)");
}
endBlock();
}
return this;
}
@Override
public JsonLikeWriter endBlock() throws IOException {
if (currentBlock.getType() == BlockType.NONE) {
ourLog.error("JsonLikeStreamWriter.endBlock(); called with no active JSON document");
} else {
Object toPut = null;
if (currentBlock.getType() == BlockType.ARRAY) {
toPut = currentBlock.getArray();
} else {
toPut = currentBlock.getObject();
}
Block parentBlock = blockStack.pop();
if (parentBlock.getType() == BlockType.OBJECT) {
parentBlock.getObject().put(currentBlock.getName(), toPut);
} else
if (parentBlock.getType() == BlockType.ARRAY) {
parentBlock.getArray().add(toPut);
}
currentBlock = parentBlock;
}
return this;
}
}
public static class JsonLikeMapStructure implements JsonLikeStructure {
private Map<String,Object> nativeObject;
private JsonLikeObject jsonLikeObject = null;
private JsonLikeMapWriter jsonLikeWriter = null;
public JsonLikeMapStructure() {
super();
}
public JsonLikeMapStructure (Map<String,Object> json) {
super();
setNativeObject(json);
}
public void setNativeObject (Map<String,Object> json) {
this.nativeObject = json;
}
@Override
public JsonLikeStructure getInstance() {
return new JsonLikeMapStructure();
}
@Override
public JsonLikeWriter getJsonLikeWriter (Writer ignored) {
return getJsonLikeWriter();
}
@Override
public JsonLikeWriter getJsonLikeWriter () {
if (null == jsonLikeWriter) {
jsonLikeWriter = new JsonLikeMapWriter();
}
return jsonLikeWriter;
}
@Override
public void load(Reader reader) throws DataFormatException {
this.load(reader, true);
}
@Override
public void load(Reader theReader, boolean allowArray) throws DataFormatException {
throw new DataFormatException("JSON structure loading is not supported for native Java Map structures");
}
@Override
public JsonLikeObject getRootObject() {
if (null == jsonLikeObject) {
jsonLikeObject = new JsonMapObject(nativeObject);
}
return jsonLikeObject;
}
@Override
public JsonLikeArray getRootArray() throws DataFormatException {
throw new DataFormatException("JSON document must be an object not an array for native Java Map structures");
}
private class JsonMapObject extends JsonLikeObject {
private Map<String,Object> nativeObject;
private Map<String,JsonLikeValue> jsonLikeMap = new LinkedHashMap<String,JsonLikeValue>();
public JsonMapObject (Map<String,Object> json) {
this.nativeObject = json;
}
@Override
public Object getValue() {
return nativeObject;
}
@Override
public Set<String> keySet() {
return nativeObject.keySet();
}
@Override
public JsonLikeValue get(String key) {
JsonLikeValue result = null;
if (jsonLikeMap.containsKey(key)) {
result = jsonLikeMap.get(key);
} else {
Object child = nativeObject.get(key);
if (child != null) {
result = new JsonMapValue(child);
}
jsonLikeMap.put(key, result);
}
return result;
}
}
private class JsonMapArray extends JsonLikeArray {
private List<Object> nativeArray;
private Map<Integer,JsonLikeValue> jsonLikeMap = new LinkedHashMap<Integer,JsonLikeValue>();
public JsonMapArray (List<Object> json) {
this.nativeArray = json;
}
@Override
public Object getValue() {
return nativeArray;
}
@Override
public int size() {
return nativeArray.size();
}
@Override
public JsonLikeValue get(int index) {
Integer key = Integer.valueOf(index);
JsonLikeValue result = null;
if (jsonLikeMap.containsKey(key)) {
result = jsonLikeMap.get(key);
} else {
Object child = nativeArray.get(index);
if (child != null) {
result = new JsonMapValue(child);
}
jsonLikeMap.put(key, result);
}
return result;
}
}
private class JsonMapValue extends JsonLikeValue {
private Object nativeValue;
private JsonLikeObject jsonLikeObject = null;
private JsonLikeArray jsonLikeArray = null;
public JsonMapValue (Object json) {
this.nativeValue = json;
}
@Override
public Object getValue() {
return nativeValue;
}
@Override
public ValueType getJsonType() {
if (isNull()) {
return ValueType.NULL;
}
if (isObject()) {
return ValueType.OBJECT;
}
if (isArray()) {
return ValueType.ARRAY;
}
return ValueType.SCALAR;
}
@Override
public ScalarType getDataType() {
if (isString()) {
return ScalarType.STRING;
}
if (isNumber()) {
return ScalarType.NUMBER;
}
if (isBoolean()) {
return ScalarType.BOOLEAN;
}
return null;
}
@SuppressWarnings("unchecked")
@Override
public JsonLikeArray getAsArray() {
if (nativeValue != null && isArray()) {
if (null == jsonLikeArray) {
jsonLikeArray = new JsonMapArray((List<Object>)nativeValue);
}
}
return jsonLikeArray;
}
@SuppressWarnings("unchecked")
@Override
public JsonLikeObject getAsObject() {
if (nativeValue != null && isObject()) {
if (null == jsonLikeObject) {
jsonLikeObject = new JsonMapObject((Map<String,Object>)nativeValue);
}
}
return jsonLikeObject;
}
@Override
public String getAsString() {
String result = null;
if (nativeValue != null) {
result = nativeValue.toString();
}
return result;
}
@Override
public boolean getAsBoolean() {
if (nativeValue != null && isBoolean()) {
return ((Boolean)nativeValue).booleanValue();
}
return super.getAsBoolean();
}
public boolean isObject () {
return (nativeValue != null)
&& ( (nativeValue instanceof Map) || Map.class.isAssignableFrom(nativeValue.getClass()) );
}
public boolean isArray () {
return (nativeValue != null)
&& ( (nativeValue instanceof List) || List.class.isAssignableFrom(nativeValue.getClass()));
}
public boolean isString () {
return (nativeValue != null)
&& ( (nativeValue instanceof String) || String.class.isAssignableFrom(nativeValue.getClass()));
}
public boolean isNumber () {
return (nativeValue != null)
&& ( (nativeValue instanceof Number) || Number.class.isAssignableFrom(nativeValue.getClass()) );
}
public boolean isBoolean () {
return (nativeValue != null)
&& ( (nativeValue instanceof Boolean) || Boolean.class.isAssignableFrom(nativeValue.getClass()) );
}
public boolean isNull () {
return (null == nativeValue);
}
}
}
}

9
pom.xml
View File

@ -563,7 +563,7 @@
<slf4j_version>1.7.25</slf4j_version>
<spring_version>5.1.3.RELEASE</spring_version>
<spring_data_version>2.1.3.RELEASE</spring_data_version>
<spring-boot.version>2.1.1.RELEASE</spring-boot.version>
<spring_boot_version>2.1.1.RELEASE</spring_boot_version>
<spring_retry_version>1.2.2.RELEASE</spring_retry_version>
<stax2_api_version>3.1.4</stax2_api_version>
@ -1256,6 +1256,11 @@
<artifactId>spring-test</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-test</artifactId>
<version>${spring_boot_version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-tx</artifactId>
@ -1334,7 +1339,7 @@
<plugin>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-maven-plugin</artifactId>
<version>${spring-boot.version}</version>
<version>${spring_boot_version}</version>
</plugin>
<plugin>
<groupId>org.sonatype.plugins</groupId>