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Some test cleanup (#1616) 

* Some test cleanup

* Add test

* More test logging

* More docs cleanup

* Add test logging
This commit is contained in:
James Agnew 2019-12-02 11:00:18 -05:00 committed by GitHub
parent 86bd9a28fe
commit f58fba6f04
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GPG Key ID: 4AEE18F83AFDEB23
13 changed files with 753 additions and 284 deletions
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14
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/param/QualifierDetails.java
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@ -42,20 +42,6 @@ public class QualifierDetails {
}
}
}
/*
* This was removed Sep 9 2015, as I don't see any way it could possibly be triggered.
if (!theQualifierWhitelist.contains(SearchParameter.QUALIFIER_ANY_TYPE)) {
if (myColonQualifier != null) {
if (!theQualifierWhitelist.contains(myColonQualifier)) {
return false;
}
} else {
if (!theQualifierWhitelist.contains(":")) {
return false;
}
}
}
*/
}
if (theQualifierBlacklist != null) {
if (myDotQualifier != null) {

6
hapi-fhir-client/src/main/java/ca/uhn/fhir/rest/client/method/MethodUtil.java
View File

@ -255,8 +255,7 @@ public class MethodUtil {
parameter.setRequired(true);
parameter.setDeclaredTypes(((RequiredParam) nextAnnotation).targetTypes());
parameter.setCompositeTypes(((RequiredParam) nextAnnotation).compositeTypes());
parameter.setChainlists(((RequiredParam) nextAnnotation).chainWhitelist(),
((RequiredParam) nextAnnotation).chainBlacklist());
parameter.setChainlists(((RequiredParam) nextAnnotation).chainWhitelist());
parameter.setType(theContext, parameterType, innerCollectionType, outerCollectionType);
param = parameter;
} else if (nextAnnotation instanceof OptionalParam) {
@ -265,8 +264,7 @@ public class MethodUtil {
parameter.setRequired(false);
parameter.setDeclaredTypes(((OptionalParam) nextAnnotation).targetTypes());
parameter.setCompositeTypes(((OptionalParam) nextAnnotation).compositeTypes());
parameter.setChainlists(((OptionalParam) nextAnnotation).chainWhitelist(),
((OptionalParam) nextAnnotation).chainBlacklist());
parameter.setChainlists(((OptionalParam) nextAnnotation).chainWhitelist());
parameter.setType(theContext, parameterType, innerCollectionType, outerCollectionType);
param = parameter;
} else if (nextAnnotation instanceof RawParam) {

45
hapi-fhir-client/src/main/java/ca/uhn/fhir/rest/client/method/SearchParameter.java
View File

@ -47,8 +47,8 @@ public class SearchParameter extends BaseQueryParameter {
static final String QUALIFIER_ANY_TYPE = ":*";
static {
ourParamTypes = new HashMap<Class<?>, RestSearchParameterTypeEnum>();
ourParamQualifiers = new HashMap<RestSearchParameterTypeEnum, Set<String>>();
ourParamTypes = new HashMap<>();
ourParamQualifiers = new HashMap<>();
ourParamTypes.put(StringParam.class, RestSearchParameterTypeEnum.STRING);
ourParamTypes.put(StringOrListParam.class, RestSearchParameterTypeEnum.STRING);
@ -100,11 +100,9 @@ public class SearchParameter extends BaseQueryParameter {
private List<Class<? extends IQueryParameterType>> myCompositeTypes = Collections.emptyList();
private List<Class<? extends IBaseResource>> myDeclaredTypes;
private String myDescription;
private String myName;
private IParamBinder<?> myParamBinder;
private RestSearchParameterTypeEnum myParamType;
private Set<String> myQualifierBlacklist;
private Set<String> myQualifierWhitelist;
private boolean myRequired;
private Class<?> myType;
@ -124,7 +122,7 @@ public class SearchParameter extends BaseQueryParameter {
*/
@Override
public List<QualifiedParamList> encode(FhirContext theContext, Object theObject) throws InternalErrorException {
ArrayList<QualifiedParamList> retVal = new ArrayList<QualifiedParamList>();
ArrayList<QualifiedParamList> retVal = new ArrayList<>();
// TODO: declaring method should probably have a generic type..
@SuppressWarnings("rawtypes")
@ -139,14 +137,6 @@ public class SearchParameter extends BaseQueryParameter {
return retVal;
}
public List<Class<? extends IBaseResource>> getDeclaredTypes() {
return Collections.unmodifiableList(myDeclaredTypes);
}
public String getDescription() {
return myDescription;
}
/*
* (non-Javadoc)
*
@ -186,28 +176,17 @@ public class SearchParameter extends BaseQueryParameter {
return myParamBinder.parse(theContext, getName(), theString);
}
public void setChainlists(String[] theChainWhitelist, String[] theChainBlacklist) {
myQualifierWhitelist = new HashSet<String>(theChainWhitelist.length);
public void setChainlists(String[] theChainWhitelist) {
myQualifierWhitelist = new HashSet<>(theChainWhitelist.length);
myQualifierWhitelist.add(QUALIFIER_ANY_TYPE);
for (int i = 0; i < theChainWhitelist.length; i++) {
if (theChainWhitelist[i].equals(OptionalParam.ALLOW_CHAIN_ANY)) {
for (String chain : theChainWhitelist) {
if (chain.equals(OptionalParam.ALLOW_CHAIN_ANY)) {
myQualifierWhitelist.add('.' + OptionalParam.ALLOW_CHAIN_ANY);
} else if (theChainWhitelist[i].equals(EMPTY_STRING)) {
} else if (chain.equals(EMPTY_STRING)) {
myQualifierWhitelist.add(".");
} else {
myQualifierWhitelist.add('.' + theChainWhitelist[i]);
}
}
if (theChainBlacklist.length > 0) {
myQualifierBlacklist = new HashSet<String>(theChainBlacklist.length);
for (String next : theChainBlacklist) {
if (next.equals(EMPTY_STRING)) {
myQualifierBlacklist.add(EMPTY_STRING);
} else {
myQualifierBlacklist.add('.' + next);
}
myQualifierWhitelist.add('.' + chain);
}
}
}
@ -220,10 +199,6 @@ public class SearchParameter extends BaseQueryParameter {
myDeclaredTypes = Arrays.asList(theTypes);
}
public void setDescription(String theDescription) {
myDescription = theDescription;
}
public void setName(String name) {
this.myName = name;
}
@ -271,7 +246,7 @@ public class SearchParameter extends BaseQueryParameter {
Set<String> builtInQualifiers = ourParamQualifiers.get(typeEnum);
if (builtInQualifiers != null) {
if (myQualifierWhitelist != null) {
HashSet<String> qualifierWhitelist = new HashSet<String>();
HashSet<String> qualifierWhitelist = new HashSet<>();
qualifierWhitelist.addAll(myQualifierWhitelist);
qualifierWhitelist.addAll(builtInQualifiers);
myQualifierWhitelist = qualifierWhitelist;

20
hapi-fhir-docs/src/main/java/ca/uhn/hapi/fhir/docs/FhirTesterConfig.java
View File

@ -1,5 +1,25 @@
package ca.uhn.hapi.fhir.docs;
/*-
* #%L
* HAPI FHIR - Docs
* %%
* Copyright (C) 2014 - 2019 University Health Network
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.context.FhirVersionEnum;
import ca.uhn.fhir.to.FhirTesterMvcConfig;
import ca.uhn.fhir.to.TesterConfig;

286
hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/introduction/versions.md
View File

@ -9,7 +9,7 @@ this page.
The following table shows the various versions of the HAPI FHIR library, and the versions of the FHIR standard that they support. Note that support for stable releases of FHIR are shown in <span style="background: #CEC; padding: 3px;">GREEN</span> and support for draft pre-release versions of FHIR are shown in <span style="background: #EEB; padding: 3px;">YELLOW</span>.
Note also that after the release of the FHIR DSTU2 specification, the FHIR
standard itself stopped using the DSTUx naming scheme, in favour or naming new releases STUx or simply Rx. Because HAPI FHIR already had draft support for what was then called DSTU3 at this time, we did not update our naming conventions until R4 in order to avoid breaking existing users' code. From the perspective of a user of HAPI FHIR, consider the terms DSTU3 / STU3 / R3 to be interchangeable.
standard itself stopped using the DSTUx naming scheme, in favour or naming new releases STUx or simply Rx. Because HAPI FHIR already had draft support for what was then called DSTU3, we did not update our naming conventions until R4 in order to avoid breaking existing users' code. From the perspective of a user of HAPI FHIR, consider the terms DSTU3 / STU3 / R3 to be interchangeable.
<table class="table table-condensed versions-table">
<thead>
@ -26,102 +26,122 @@ Note also that after the release of the FHIR DSTU2 specification, the FHIR
</thead>
<tbody>
<tr>
<td>HAPI FHIR 1.1</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td class="versions-table-cell-release">0.5.0<span class="download-version-hash">-5843</span></td>
<td>HAPI FHIR 4.1.0</td>
<td>JDK8</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 1.2</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td class="versions-table-cell-release">0.5.0<span class="download-version-hash">-5843</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 1.3</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.2</td>
<td class="versions-table-cell-draft">4.0.1</td>
<td class="versions-table-cell-release">4.1.0<span class="download-version-hash"><br/>1a7623d866</span></td>
</tr>
<tr>
<td>HAPI FHIR 1.4</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td>HAPI FHIR 4.0.0</td>
<td>JDK8</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-release">1.3.0<span class="download-version-hash">-7602</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-draft">4.0.0</td>
<td class="versions-table-cell-release">4.1.0<span class="download-version-hash"><br/>e0e3caf9ba</span></td>
</tr>
<tr>
<td>HAPI FHIR 1.5</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td>HAPI FHIR 3.8.0</td>
<td>JDK8</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-release">1.4.0<span class="download-version-hash">-8138</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-draft">4.0.0</td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 1.6</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td>HAPI FHIR 3.7.0</td>
<td>JDK8</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-release">1.4.0<span class="download-version-hash">-8636</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-draft">4.0.0</td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 2.0</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td>HAPI FHIR 3.6.0</td>
<td>JDK8</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-release">1.6.0<span class="download-version-hash">-9663</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-release">3.6.0<span class="download-version-hash"><br/>1202b2eed0f</span></td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 2.1</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td>HAPI FHIR 3.5.0</td>
<td>JDK8</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-release">1.7.0<span class="download-version-hash">-10129</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-release">3.4.0<span class="download-version-hash"><br/>13732</span></td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 2.2</td>
<td>HAPI FHIR 3.4.0</td>
<td>JDK8</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-release">3.4.0<span class="download-version-hash"><br/>13732</span></td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 3.3.0</td>
<td>JDK7</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-release">3.2.0<span class="download-version-hash"><br/>13271</span></td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 3.2.0</td>
<td>JDK7</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-release">3.2.0<span class="download-version-hash"><br/>12917</span></td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 3.1.0</td>
<td>JDK7</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-release">3.1.0<span class="download-version-hash"><br/>12370</span></td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 3.0.0</td>
<td>JDK7</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-release">3.1.0<span class="download-version-hash"><br/>12370</span></td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 2.5</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-release">1.8.0<span class="download-version-hash">-10528</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 2.3</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-release">1.9.0<span class="download-version-hash">-11501</span></td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
</tr>
@ -136,124 +156,104 @@ Note also that after the release of the FHIR DSTU2 specification, the FHIR
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 2.5</td>
<td>HAPI FHIR 2.3</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-release">1.9.0<span class="download-version-hash"><br/>11501</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 3.0.0</td>
<td>JDK7</td>
<td class="versions-table-cell-empty"></td>
<td>HAPI FHIR 2.2</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-release">3.1.0<span class="download-version-hash">-12370</span></td>
<td class="versions-table-cell-release">1.8.0<span class="download-version-hash"><br/>10528</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 3.1.0</td>
<td>JDK7</td>
<td class="versions-table-cell-empty"></td>
<td>HAPI FHIR 2.1</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-release">3.1.0<span class="download-version-hash">-12370</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-release">1.7.0<span class="download-version-hash"><br/>10129</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 3.2.0</td>
<td>JDK7</td>
<td class="versions-table-cell-empty"></td>
<td>HAPI FHIR 2.0</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-release">3.2.0<span class="download-version-hash">-12917</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-release">1.6.0<span class="download-version-hash"><br/>9663</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 3.3.0</td>
<td>JDK7</td>
<td class="versions-table-cell-empty"></td>
<td>HAPI FHIR 1.6</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-release">3.2.0<span class="download-version-hash">-13271</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-release">1.4.0<span class="download-version-hash"><br/>8636</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 3.4.0</td>
<td>JDK8</td>
<td class="versions-table-cell-empty"></td>
<td>HAPI FHIR 1.5</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-release">3.4.0<span class="download-version-hash">-13732</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-release">1.4.0<span class="download-version-hash"><br/>8138</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 3.5.0</td>
<td>JDK8</td>
<td class="versions-table-cell-empty"></td>
<td>HAPI FHIR 1.4</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-release">3.4.0<span class="download-version-hash">-13732</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-release">1.3.0<span class="download-version-hash"><br/>7602</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 3.6.0</td>
<td>JDK8</td>
<td class="versions-table-cell-empty"></td>
<td>HAPI FHIR 1.3</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-release">3.6.0<span class="download-version-hash">-1202b2eed0f</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 3.7.0</td>
<td>JDK8</td>
<td>HAPI FHIR 1.2</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td class="versions-table-cell-release">0.5.0<span class="download-version-hash"><br/>5843</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-draft">4.0.0</td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 3.8.0</td>
<td>JDK8</td>
<td>HAPI FHIR 1.1</td>
<td>JDK6</td>
<td class="versions-table-cell-draft">0.0.82</td>
<td class="versions-table-cell-release">0.5.0<span class="download-version-hash"><br/>5843</span></td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-draft">4.0.0</td>
<td class="versions-table-cell-empty"></td>
</tr>
<tr>
<td>HAPI FHIR 4.0.0</td>
<td>JDK8</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.1</td>
<td class="versions-table-cell-draft">4.0.0</td>
<td class="versions-table-cell-release">4.1.0<span class="download-version-hash">-e0e3caf9ba</span></td>
</tr>
<tr>
<td>HAPI FHIR 4.1.0</td>
<td>JDK8</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.2</td>
<td class="versions-table-cell-draft">4.0.1</td>
<td class="versions-table-cell-release">4.1.0<span class="download-version-hash">-1a7623d866</span></td>
</tr>
</tbody>
</table>

4
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/Search.java
View File

@ -1,6 +1,7 @@
package ca.uhn.fhir.jpa.entity;
import ca.uhn.fhir.jpa.model.search.SearchStatusEnum;
import ca.uhn.fhir.jpa.search.SearchCoordinatorSvcImpl;
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
import ca.uhn.fhir.model.api.Include;
import ca.uhn.fhir.rest.param.DateRangeParam;
@ -184,6 +185,9 @@ public class Search implements ICachedSearchDetails, Serializable {
public void setFailureMessage(String theFailureMessage) {
myFailureMessage = left(theFailureMessage, FAILURE_MESSAGE_LENGTH);
if (System.getProperty(SearchCoordinatorSvcImpl.UNIT_TEST_CAPTURE_STACK) != null) {
myFailureMessage = theFailureMessage;
}
}
public Long getId() {

2
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/search/SearchCoordinatorSvcImpl.java
View File

@ -904,7 +904,7 @@ public class SearchCoordinatorSvcImpl implements ISearchCoordinatorSvc {
}
if (System.getProperty(UNIT_TEST_CAPTURE_STACK) != null) {
failureMessage += "\n" + ExceptionUtils.getStackTrace(rootCause);
failureMessage += "\nStack\n" + ExceptionUtils.getStackTrace(rootCause);
}
mySearch.setFailureMessage(failureMessage);

4
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/BaseTermReadSvcImpl.java
View File

@ -1824,8 +1824,8 @@ public abstract class BaseTermReadSvcImpl implements ITermReadSvc, ApplicationCo
if (isNotBlank(targetCode) && isNotBlank(targetCodeSystem)) {
for (Iterator<TermConceptMapGroupElementTarget> iter = nextElement.getConceptMapGroupElementTargets().iterator(); iter.hasNext(); ) {
TermConceptMapGroupElementTarget next = iter.next();
if (targetCodeSystem.equals(next.getSystem())) {
if (targetCode.equals(next.getCode())) {
if (StringUtils.equals(targetCodeSystem, next.getSystem())) {
if (StringUtils.equals(targetCode, next.getCode())) {
continue;
}
}

37
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/search/reindex/ResourceReindexingSvcImplTest.java
View File

@ -1,6 +1,7 @@
package ca.uhn.fhir.jpa.search.reindex;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.jpa.dao.BaseHapiFhirDao;
import ca.uhn.fhir.jpa.dao.BaseJpaTest;
import ca.uhn.fhir.jpa.dao.DaoConfig;
import ca.uhn.fhir.jpa.dao.DaoRegistry;
@ -24,6 +25,7 @@ import org.mockito.Mock;
import org.springframework.data.domain.PageRequest;
import org.springframework.data.domain.SliceImpl;
import org.springframework.transaction.PlatformTransactionManager;
import org.springframework.transaction.TransactionStatus;
import java.util.*;
import java.util.concurrent.CountDownLatch;
@ -68,6 +70,8 @@ public class ResourceReindexingSvcImplTest extends BaseJpaTest {
private ResourceReindexJobEntity mySingleJob;
@Mock
private ISearchParamRegistry mySearchParamRegistry;
@Mock
private TransactionStatus myTxStatus;
@Override
protected FhirContext getContext() {
@ -94,6 +98,8 @@ public class ResourceReindexingSvcImplTest extends BaseJpaTest {
mySvc.setTxManagerForUnitTest(myTxManager);
mySvc.setSearchParamRegistryForUnitTest(mySearchParamRegistry);
mySvc.start();
when(myTxManager.getTransaction(any())).thenReturn(myTxStatus);
}
@Test
@ -252,6 +258,37 @@ public class ResourceReindexingSvcImplTest extends BaseJpaTest {
verifyNoMoreInteractions(myReindexJobDao);
}
@Test
public void testReindexDeletedResource() {
mockNothingToExpunge();
mockSingleReindexingJob("Patient");
// Mock resource fetch
List<Long> values = Arrays.asList(0L);
when(myResourceTableDao.findIdsOfResourcesWithinUpdatedRangeOrderedFromOldest(myPageRequestCaptor.capture(), myTypeCaptor.capture(), myLowCaptor.capture(), myHighCaptor.capture())).thenReturn(new SliceImpl<>(values));
// Mock fetching resources
long[] updatedTimes = new long[]{
10 * DateUtils.MILLIS_PER_DAY
};
String[] resourceTypes = new String[]{
"Patient",
};
List<IBaseResource> resources = Arrays.asList(
new Patient().setId("Patient/0/_history/1")
);
mockWhenResourceTableFindById(updatedTimes, resourceTypes);
when(myDaoRegistry.getResourceDao(eq("Patient"))).thenReturn(myResourceDao);
when(myDaoRegistry.getResourceDao(eq(Patient.class))).thenReturn(myResourceDao);
when(myDaoRegistry.getResourceDao(eq("Observation"))).thenReturn(myResourceDao);
when(myDaoRegistry.getResourceDao(eq(Observation.class))).thenReturn(myResourceDao);
when(myResourceDao.read(any(), any(), anyBoolean())).thenReturn(null);
int count = mySvc.forceReindexingPass();
assertEquals(0, count);
verify(myResourceTableDao, times(1)).updateIndexStatus(eq(0L), eq(BaseHapiFhirDao.INDEX_STATUS_INDEXING_FAILED));
}
@Test
public void testReindexThrowsError() {
mockNothingToExpunge();

72
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/term/ValueSetExpansionR4Test.java
View File

@ -1,6 +1,13 @@
package ca.uhn.fhir.jpa.term;
import ca.uhn.fhir.jpa.entity.*;
import ca.uhn.fhir.jpa.entity.TermCodeSystem;
import ca.uhn.fhir.jpa.entity.TermCodeSystemVersion;
import ca.uhn.fhir.jpa.entity.TermConcept;
import ca.uhn.fhir.jpa.entity.TermConceptDesignation;
import ca.uhn.fhir.jpa.entity.TermValueSet;
import ca.uhn.fhir.jpa.entity.TermValueSetConcept;
import ca.uhn.fhir.jpa.entity.TermValueSetConceptDesignation;
import ca.uhn.fhir.jpa.entity.TermValueSetPreExpansionStatusEnum;
import ca.uhn.fhir.jpa.model.entity.ResourceTable;
import ca.uhn.fhir.jpa.model.util.JpaConstants;
import ca.uhn.fhir.jpa.term.custom.CustomTerminologySet;
@ -20,14 +27,25 @@ import org.springframework.transaction.support.TransactionCallbackWithoutResult;
import org.springframework.transaction.support.TransactionTemplate;
import javax.annotation.Nonnull;
import java.io.IOException;
import java.util.List;
import java.util.Optional;
import static org.hamcrest.CoreMatchers.containsString;
import static org.hamcrest.Matchers.empty;
import static org.junit.Assert.*;
import static org.mockito.ArgumentMatchers.*;
import static org.mockito.Mockito.*;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertNull;
import static org.junit.Assert.assertSame;
import static org.junit.Assert.assertThat;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import static org.mockito.ArgumentMatchers.anyCollection;
import static org.mockito.ArgumentMatchers.anyString;
import static org.mockito.ArgumentMatchers.nullable;
import static org.mockito.Mockito.times;
import static org.mockito.Mockito.verify;
import static org.mockito.Mockito.when;
public class ValueSetExpansionR4Test extends BaseTermR4Test {
private static final Logger ourLog = LoggerFactory.getLogger(ValueSetExpansionR4Test.class);
@ -35,6 +53,39 @@ public class ValueSetExpansionR4Test extends BaseTermR4Test {
@Mock
private IValueSetConceptAccumulator myValueSetCodeAccumulator;
@Test
public void testDeletePreExpandedValueSet() throws IOException {
myDaoConfig.setPreExpandValueSets(true);
loadAndPersistCodeSystemAndValueSetWithDesignations(HttpVerb.POST);
CodeSystem codeSystem = myCodeSystemDao.read(myExtensionalCsId);
ourLog.info("CodeSystem:\n" + myFhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(codeSystem));
ValueSet valueSet = myValueSetDao.read(myExtensionalVsId);
ourLog.info("ValueSet:\n" + myFhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(valueSet));
myTermSvc.preExpandDeferredValueSetsToTerminologyTables();
myCaptureQueriesListener.clear();
ValueSet expandedValueSet = myTermSvc.expandValueSet(valueSet, myDaoConfig.getPreExpandValueSetsDefaultOffset(), myDaoConfig.getPreExpandValueSetsDefaultCount());
assertEquals(24, expandedValueSet.getExpansion().getContains().size());
runInTransaction(()->{
assertEquals(24, myTermValueSetConceptDao.count());
});
myValueSetDao.delete(valueSet.getIdElement());
runInTransaction(()->{
assertEquals(0, myTermValueSetConceptDao.count());
});
expandedValueSet = myTermSvc.expandValueSet(valueSet, myDaoConfig.getPreExpandValueSetsDefaultOffset(), myDaoConfig.getPreExpandValueSetsDefaultCount());
assertEquals(24, expandedValueSet.getExpansion().getContains().size());
}
@SuppressWarnings("SpellCheckingInspection")
@Test
public void testExpandTermValueSetAndChildren() throws Exception {
@ -494,15 +545,16 @@ public class ValueSetExpansionR4Test extends BaseTermR4Test {
myTermSvc.preExpandDeferredValueSetsToTerminologyTables();
ValueSet expandedValueSet = myTermSvc.expandValueSet(valueSet, myDaoConfig.getPreExpandValueSetsDefaultOffset(), 0);
ourLog.info("Expanded ValueSet:\n" + myFhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(expandedValueSet));
String expanded = myFhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(expandedValueSet);
ourLog.info("Expanded ValueSet:\n" + expanded);
assertEquals(codeSystem.getConcept().size(), expandedValueSet.getExpansion().getTotal());
assertEquals(myDaoConfig.getPreExpandValueSetsDefaultOffset(), expandedValueSet.getExpansion().getOffset());
assertEquals(2, expandedValueSet.getExpansion().getParameter().size());
assertEquals("offset", expandedValueSet.getExpansion().getParameter().get(0).getName());
assertEquals(0, expandedValueSet.getExpansion().getParameter().get(0).getValueIntegerType().getValue().intValue());
assertEquals("count", expandedValueSet.getExpansion().getParameter().get(1).getName());
assertEquals(0, expandedValueSet.getExpansion().getParameter().get(1).getValueIntegerType().getValue().intValue());
assertEquals(expanded, 2, expandedValueSet.getExpansion().getParameter().size());
assertEquals(expanded, "offset", expandedValueSet.getExpansion().getParameter().get(0).getName());
assertEquals(expanded, 0, expandedValueSet.getExpansion().getParameter().get(0).getValueIntegerType().getValue().intValue());
assertEquals(expanded, "count", expandedValueSet.getExpansion().getParameter().get(1).getName());
assertEquals(expanded, 0, expandedValueSet.getExpansion().getParameter().get(1).getValueIntegerType().getValue().intValue());
assertFalse(expandedValueSet.getExpansion().hasContains());
}

30
hapi-fhir-server/src/test/java/ca/uhn/fhir/rest/server/method/SearchMethodBindingTest.java
View File

@ -7,12 +7,16 @@ import ca.uhn.fhir.rest.annotation.RequiredParam;
import ca.uhn.fhir.rest.annotation.Search;
import ca.uhn.fhir.rest.api.RequestTypeEnum;
import ca.uhn.fhir.rest.api.server.RequestDetails;
import ca.uhn.fhir.rest.param.ReferenceParam;
import ca.uhn.fhir.rest.server.servlet.ServletRequestDetails;
import com.google.common.collect.ImmutableMap;
import org.hamcrest.Matchers;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.junit.Assert;
import org.junit.Before;
import org.junit.Test;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.util.Map;
@ -23,7 +27,7 @@ import static org.mockito.Mockito.when;
public class SearchMethodBindingTest {
private static final TestResourceProvider TEST_RESOURCE_PROVIDER = new TestResourceProvider();
private static final Logger ourLog = LoggerFactory.getLogger(SearchMethodBindingTest.class);
private FhirContext fhirContext;
@Before
@ -73,6 +77,18 @@ public class SearchMethodBindingTest {
Matchers.is(true));
}
@Test
public void methodMatchesChainBlacklist() throws NoSuchMethodException {
SearchMethodBinding binding = getBinding("withChainBlacklist", ReferenceParam.class);
ourLog.info("Testing binding: {}", binding);
Assert.assertThat(binding.incomingServerRequestMatchesMethod(
mockSearchRequest(ImmutableMap.of("refChainBlacklist.badChain", new String[]{"foo"}))),
Matchers.is(false));
Assert.assertThat(binding.incomingServerRequestMatchesMethod(
mockSearchRequest(ImmutableMap.of("refChainBlacklist.goodChain", new String[]{"foo"}))),
Matchers.is(true));
}
private SearchMethodBinding getBinding(String name, Class<?>... parameters) throws NoSuchMethodException {
return new SearchMethodBinding(IBaseResource.class,
IBaseResource.class,
@ -86,6 +102,13 @@ public class SearchMethodBindingTest {
when(requestDetails.getOperation()).thenReturn("_search");
when(requestDetails.getRequestType()).thenReturn(RequestTypeEnum.GET);
when(requestDetails.getParameters()).thenReturn(params);
when(requestDetails.getUnqualifiedToQualifiedNames()).thenAnswer(t -> {
RequestDetails rd = new ServletRequestDetails(null);
rd.setParameters(params);
return rd.getUnqualifiedToQualifiedNames();
});
return requestDetails;
}
@ -106,6 +129,11 @@ public class SearchMethodBindingTest {
return null;
}
@Search
public IBaseResource withChainBlacklist(@OptionalParam(name = "refChainBlacklist", chainWhitelist = "goodChain", chainBlacklist = "badChain") ReferenceParam param) {
return null;
}
}
}

2
hapi-fhir-structures-dstu2.1/src/test/java/ca/uhn/fhir/parser/XmlParserDstu2_1Test.java
View File

@ -45,7 +45,7 @@ import java.util.*;
import static org.hamcrest.Matchers.contains;
import static org.hamcrest.Matchers.*;
import static org.junit.Assert.*;
import static org.mockito.Matchers.any;
import static org.mockito.ArgumentMatchers.any;
import static org.mockito.Mockito.*;
public class XmlParserDstu2_1Test {

369
hapi-fhir-structures-r4/src/test/resources/bundle-circ-ref.json Normal file
View File

@ -0,0 +1,369 @@
{
"resourceType": "Bundle",
"id": "1f3236fa-2fab-453d-86e8-72387929257c",
"meta": {
"lastUpdated": "2019-04-04T17:53:00.051-04:00"
},
"type": "searchset",
"total": 2,
"link": [
{
"relation": "self",
"url": "https://uhndigitalfhir-dev.uhn.ca/uhn-fhir-service-v2/DiagnosticReport?_include=DiagnosticReport%3Aresult&_query=findDiagnosticReportsByPatientWithIssuedDate&code=urn%3Aoid%3A1.3.6.1.4.1.12201.102.5%7C491&issued=ge2000-08-07&subject%3Aidentifier=urn%3Aoid%3A2.16.840.1.113883.3.239.18.148%7C7001316"
}
],
"entry": [
{
"fullUrl": "https://uhndigitalfhir-dev.uhn.ca/uhn-fhir-service-v2/DiagnosticReport/5541279",
"resource": {
"resourceType": "DiagnosticReport",
"id": "5541279",
"meta": {
"profile": [
"http://fhir.uhn.ca/Profile/diagnosticreport"
]
},
"contained": [
{
"resourceType": "Observation",
"id": "1",
"meta": {
"profile": [
"http://fhir.uhn.ca/Profile/observation"
]
},
"extension": [
{
"url": "http://fhir.uhn.ca/Profile/observation#source_system_status",
"valueString": "F"
},
{
"url": "http://fhir.uhn.ca/Profile/observation#lastUpdatedDateTime",
"valueInstant": "2007-07-30T14:48:41.000-04:00"
},
{
"url": "http://fhir.uhn.ca/Profile/observation#createDateTime",
"valueInstant": "2007-07-30T14:48:41.000-04:00"
},
{
"url": "http://fhir.uhn.ca/Profile/observation#sequence",
"valueString": "1"
},
{
"url": "http://fhir.uhn.ca/Profile/observation#diagnosticReport",
"valueReference": {
"reference": "DiagnosticReport/5541279"
}
}
],
"status": "final",
"code": {
"coding": [
{
"system": "urn:oid:1.3.6.1.4.1.12201.102.6",
"code": "01005.1"
}
],
"text": "Creatinine"
},
"subject": {
"reference": "Patient/5556360"
},
"issued": "2007-07-30T14:48:41.000-04:00",
"valueQuantity": {
"value": 72.0,
"unit": "umol/L"
},
"interpretation": {
"coding": [
{
"system": "urn:uhn:qcpr:interpretation_codes",
"code": "N"
}
]
},
"referenceRange": [
{
"meaning": {
"text": "<=99"
}
}
]
},
{
"resourceType": "Observation",
"id": "2",
"meta": {
"profile": [
"http://fhir.uhn.ca/Profile/observation"
]
},
"extension": [
{
"url": "http://fhir.uhn.ca/Profile/observation#source_system_status",
"valueString": "F"
},
{
"url": "http://fhir.uhn.ca/Profile/observation#lastUpdatedDateTime",
"valueInstant": "2007-07-30T14:48:41.000-04:00"
},
{
"url": "http://fhir.uhn.ca/Profile/observation#createDateTime",
"valueInstant": "2007-07-30T14:48:41.000-04:00"
},
{
"url": "http://fhir.uhn.ca/Profile/observation#sequence",
"valueString": "2"
},
{
"url": "http://fhir.uhn.ca/Profile/observation#diagnosticReport",
"valueReference": {
"reference": "DiagnosticReport/5541279"
}
}
],
"status": "final",
"code": {
"coding": [
{
"system": "urn:oid:1.3.6.1.4.1.12201.102.6",
"code": "01439.2"
}
],
"text": "Tech Comment"
},
"subject": {
"reference": "Patient/5556360"
},
"issued": "2007-07-30T14:48:41.000-04:00",
"valueString": "Req#T07-104306,.",
"interpretation": {
"coding": [
{
"system": "urn:uhn:qcpr:interpretation_codes",
"code": "N"
}
]
}
}
],
"extension": [
{
"url": "http://fhir.uhn.ca/Profile/diagnosticreport#source_system_status",
"valueString": "F"
},
{
"url": "http://fhir.uhn.ca/Profile/diagnosticreport#lastUpdatedDateTime",
"valueInstant": "2007-07-30T14:48:41.000-04:00"
},
{
"url": "http://fhir.uhn.ca/Profile/diagnosticreport#createDateTime",
"valueInstant": "2007-07-30T14:48:41.000-04:00"
},
{
"url": "http://fhir.uhn.ca/Profile/diagnosticreport#terminologyCodesFromQuery",
"valueCoding": {
"system": "urn:oid:1.3.6.1.4.1.12201.102.5",
"code": "491"
}
}
],
"identifier": [
{
"system": "urn:uhn:qcpr:order_ids",
"value": "651621"
}
],
"status": "final",
"code": {
"coding": [
{
"system": "urn:oid:1.3.6.1.4.1.12201.102.5",
"code": "491"
}
],
"text": "Creatinine, Plasma"
},
"subject": {
"reference": "Patient/5556360"
},
"encounter": {
"reference": "Encounter/5556361"
},
"effectiveDateTime": "2007-04-26T14:36:00-04:00",
"issued": "2007-07-30T14:48:41.000-04:00",
"result": [
{
"reference": "#1"
},
{
"reference": "#2"
}
]
}
},
{
"fullUrl": "https://uhndigitalfhir-dev.uhn.ca/uhn-fhir-service-v2/DiagnosticReport/5777012",
"resource": {
"resourceType": "DiagnosticReport",
"id": "5777012",
"meta": {
"profile": [
"http://fhir.uhn.ca/Profile/diagnosticreport"
]
},
"contained": [
{
"resourceType": "Observation",
"id": "1",
"meta": {
"profile": [
"http://fhir.uhn.ca/Profile/observation"
]
},
"extension": [
{
"url": "http://fhir.uhn.ca/Profile/observation#source_system_status",
"valueString": "I"
},
{
"url": "http://fhir.uhn.ca/Profile/observation#lastUpdatedDateTime",
"valueInstant": "2008-03-31T15:09:39.000-04:00"
},
{
"url": "http://fhir.uhn.ca/Profile/observation#createDateTime",
"valueInstant": "2008-03-31T15:09:39.000-04:00"
},
{
"url": "http://fhir.uhn.ca/Profile/observation#sequence",
"valueString": "1"
},
{
"url": "http://fhir.uhn.ca/Profile/observation#diagnosticReport",
"valueReference": {
"reference": "DiagnosticReport/5777012"
}
}
],
"status": "preliminary",
"code": {
"coding": [
{
"system": "urn:oid:1.3.6.1.4.1.12201.102.6",
"code": "4.1"
}
],
"text": "When"
},
"subject": {
"reference": "Patient/5556360"
},
"issued": "2008-03-31T15:09:39.000-04:00",
"valueString": "Monday, 31 March 08 1508 Rout"
},
{
"resourceType": "Observation",
"id": "2",
"meta": {
"profile": [
"http://fhir.uhn.ca/Profile/observation"
]
},
"extension": [
{
"url": "http://fhir.uhn.ca/Profile/observation#source_system_status",
"valueString": "I"
},
{
"url": "http://fhir.uhn.ca/Profile/observation#lastUpdatedDateTime",
"valueInstant": "2008-03-31T15:09:39.000-04:00"
},
{
"url": "http://fhir.uhn.ca/Profile/observation#createDateTime",
"valueInstant": "2008-03-31T15:09:39.000-04:00"
},
{
"url": "http://fhir.uhn.ca/Profile/observation#sequence",
"valueString": "2"
},
{
"url": "http://fhir.uhn.ca/Profile/observation#diagnosticReport",
"valueReference": {
"reference": "DiagnosticReport/5777012"
}
}
],
"status": "preliminary",
"code": {
"coding": [
{
"system": "urn:oid:1.3.6.1.4.1.12201.102.6",
"code": "5.2"
}
],
"text": "Specimen"
},
"subject": {
"reference": "Patient/5556360"
},
"issued": "2008-03-31T15:09:39.000-04:00",
"valueString": "Blood Plasma - Bio (Green)"
}
],
"extension": [
{
"url": "http://fhir.uhn.ca/Profile/diagnosticreport#source_system_status",
"valueString": "I"
},
{
"url": "http://fhir.uhn.ca/Profile/diagnosticreport#lastUpdatedDateTime",
"valueInstant": "2008-03-31T15:09:39.000-04:00"
},
{
"url": "http://fhir.uhn.ca/Profile/diagnosticreport#createDateTime",
"valueInstant": "2008-03-31T15:09:39.000-04:00"
},
{
"url": "http://fhir.uhn.ca/Profile/diagnosticreport#terminologyCodesFromQuery",
"valueCoding": {
"system": "urn:oid:1.3.6.1.4.1.12201.102.5",
"code": "491"
}
}
],
"identifier": [
{
"system": "urn:uhn:qcpr:order_ids",
"value": "814177"
}
],
"status": "registered",
"code": {
"coding": [
{
"system": "urn:oid:1.3.6.1.4.1.12201.102.5",
"code": "491"
}
],
"text": "Creatinine, Plasma"
},
"subject": {
"reference": "Patient/5556360"
},
"encounter": {
"reference": "Encounter/5606097"
},
"effectiveDateTime": "2008-03-31T15:09:00-04:00",
"issued": "2008-03-31T15:09:39.000-04:00",
"result": [
{
"reference": "#1"
},
{
"reference": "#2"
}
]
}
}
]
}