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Merge pull request #1504 from jamesagnew/ks-source-request-id-append-bug 

fixed meta.source request append bug
This commit is contained in:
Ken Stevens 2019-09-24 16:32:50 -04:00 committed by GitHub
parent 264c8d9fc4 7b363c2c5c
commit f6fc411407
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GPG Key ID: 4AEE18F83AFDEB23
7 changed files with 111 additions and 8 deletions
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16
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/param/ReferenceParam.java
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@ -22,6 +22,7 @@ package ca.uhn.fhir.rest.param;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.parser.DataFormatException;
import ca.uhn.fhir.util.CoverageIgnore;
import org.apache.commons.lang3.builder.ToStringBuilder;
import org.apache.commons.lang3.builder.ToStringStyle;
@ -115,14 +116,21 @@ public class ReferenceParam extends BaseParam /*implements IQueryParameterType*/
if (nextIdx != -1) {
myChain = q.substring(nextIdx + 1);
myResourceType = q.substring(1, nextIdx);
myValue = theValue;
myIdPart = theValue;
} else {
myChain = null;
myResourceType = q.substring(1);
myValue = theValue;
myIdPart = theValue;
}
myValue = theValue;
myIdPart = theValue;
IdDt id = new IdDt(theValue);
if (!id.hasBaseUrl() && id.hasIdPart() && id.hasResourceType()) {
if (id.getResourceType().equals(myResourceType)) {
myIdPart = id.getIdPart();
}
}
} else if (q.startsWith(".")) {
myChain = q.substring(1);
myResourceType = null;

19
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/BaseHapiFhirDao.java
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@ -47,12 +47,14 @@ import ca.uhn.fhir.rest.api.RestSearchParameterTypeEnum;
import ca.uhn.fhir.rest.api.server.IBundleProvider;
import ca.uhn.fhir.rest.api.server.RequestDetails;
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
import ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException;
import ca.uhn.fhir.rest.server.interceptor.IServerInterceptor.ActionRequestDetails;
import ca.uhn.fhir.rest.server.servlet.ServletRequestDetails;
import ca.uhn.fhir.util.*;
import ca.uhn.fhir.util.CoverageIgnore;
import ca.uhn.fhir.util.MetaUtil;
import ca.uhn.fhir.util.StopWatch;
import ca.uhn.fhir.util.XmlUtil;
import com.google.common.annotations.VisibleForTesting;
import com.google.common.base.Charsets;
import com.google.common.collect.Sets;
@ -86,7 +88,6 @@ import javax.xml.stream.events.XMLEvent;
import java.util.*;
import java.util.Map.Entry;
import static ca.uhn.fhir.jpa.model.util.JpaConstants.EXT_EXTERNALIZED_BINARY_ID;
import static org.apache.commons.lang3.StringUtils.*;
/*
@ -974,7 +975,7 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> implements IDao,
// 6. Handle source (provenance)
if (isNotBlank(provenanceRequestId) || isNotBlank(provenanceSourceUri)) {
String sourceString = defaultString(provenanceSourceUri)
String sourceString = cleanProvenanceSourceUri(provenanceSourceUri)
+ (isNotBlank(provenanceRequestId) ? "#" : "")
+ defaultString(provenanceRequestId);
@ -992,6 +993,16 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> implements IDao,
return retVal;
}
static String cleanProvenanceSourceUri(String theProvenanceSourceUri) {
if (isNotBlank(theProvenanceSourceUri)) {
int hashIndex = theProvenanceSourceUri.indexOf('#');
if (hashIndex != -1) {
theProvenanceSourceUri = theProvenanceSourceUri.substring(0, hashIndex);
}
}
return defaultString(theProvenanceSourceUri);
}
public String toResourceName(Class<? extends IBaseResource> theResourceType) {
return myContext.getResourceDefinition(theResourceType).getName();
}

16
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/BaseHapiFhirDaoTest.java Normal file
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@ -0,0 +1,16 @@
package ca.uhn.fhir.jpa.dao;
import org.junit.Test;
import static org.junit.Assert.assertEquals;
public class BaseHapiFhirDaoTest {
@Test
public void cleanProvenanceSourceUri() {
assertEquals("", BaseHapiFhirDao.cleanProvenanceSourceUri(null));
assertEquals("abc", BaseHapiFhirDao.cleanProvenanceSourceUri("abc"));
assertEquals("abc", BaseHapiFhirDao.cleanProvenanceSourceUri("abc#def"));
assertEquals("abc", BaseHapiFhirDao.cleanProvenanceSourceUri("abc#def#ghi"));
}
}

26
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/dstu3/ResourceProviderDstu3Test.java
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@ -3,6 +3,7 @@ package ca.uhn.fhir.jpa.provider.dstu3;
import ca.uhn.fhir.jpa.dao.DaoConfig;
import ca.uhn.fhir.jpa.dao.data.ISearchDao;
import ca.uhn.fhir.jpa.entity.Search;
import ca.uhn.fhir.jpa.model.util.JpaConstants;
import ca.uhn.fhir.jpa.provider.r4.ResourceProviderR4Test;
import ca.uhn.fhir.jpa.search.SearchCoordinatorSvcImpl;
import ca.uhn.fhir.model.api.TemporalPrecisionEnum;
@ -3913,6 +3914,31 @@ public class ResourceProviderDstu3Test extends BaseResourceProviderDstu3Test {
}
@Test
public void testUpdateWithSource() {
Patient patient = new Patient();
patient.setActive(false);
IIdType patientid = ourClient.create().resource(patient).execute().getId().toUnqualifiedVersionless();
{
Patient readPatient = (Patient) ourClient.read().resource("Patient").withId(patientid).execute();
assertThat(readPatient.getMeta().getExtensionString(JpaConstants.EXT_META_SOURCE), matchesPattern("#[a-f0-9]+"));
}
patient.setId(patientid);
patient.setActive(true);
ourClient.update().resource(patient).execute();
{
Patient readPatient = (Patient) ourClient.read().resource("Patient").withId(patientid).execute();
assertThat(readPatient.getMeta().getExtensionString(JpaConstants.EXT_META_SOURCE), matchesPattern("#[a-f0-9]+"));
readPatient.addName().setFamily("testUpdateWithSource");
ourClient.update().resource(readPatient).execute();
readPatient = (Patient) ourClient.read().resource("Patient").withId(patientid).execute();
assertThat(readPatient.getMeta().getExtensionString(JpaConstants.EXT_META_SOURCE), matchesPattern("#[a-f0-9]+"));
}
}
@Test
public void testUpdateWithETag() throws Exception {
String methodName = "testUpdateWithETag";

25
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/ResourceProviderR4Test.java
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@ -5129,6 +5129,31 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
}
@Test
public void testUpdateWithSource() {
Patient patient = new Patient();
patient.setActive(false);
IIdType patientid = ourClient.create().resource(patient).execute().getId().toUnqualifiedVersionless();
{
Patient readPatient = (Patient) ourClient.read().resource("Patient").withId(patientid).execute();
assertThat(readPatient.getMeta().getSource(), matchesPattern("#[a-f0-9]+"));
}
patient.setId(patientid);
patient.setActive(true);
ourClient.update().resource(patient).execute();
{
Patient readPatient = (Patient) ourClient.read().resource("Patient").withId(patientid).execute();
assertThat(readPatient.getMeta().getSource(), matchesPattern("#[a-f0-9]+"));
readPatient.addName().setFamily("testUpdateWithSource");
ourClient.update().resource(readPatient).execute();
readPatient = (Patient) ourClient.read().resource("Patient").withId(patientid).execute();
assertThat(readPatient.getMeta().getSource(), matchesPattern("#[a-f0-9]+"));
}
}
@Test
public void testUpdateWithETag() throws Exception {
String methodName = "testUpdateWithETag";

12
hapi-fhir-structures-dstu3/src/test/java/ca/uhn/fhir/rest/param/ReferenceParamTest.java
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@ -124,6 +124,18 @@ public class ReferenceParamTest {
}
@Test
public void testDuplicatedTypeAndValueType() {
ReferenceParam rp = new ReferenceParam();
rp.setValueAsQueryToken(ourCtx, null, ":Patient", "Patient/123");
assertEquals("Patient", rp.getResourceType());
assertEquals("123", rp.getIdPart());
assertEquals("Patient/123", rp.getValue());
assertEquals(null, rp.getQueryParameterQualifier());
}
// TODO: verify this behavior is correct. Same case as testWithResourceTypeAsQualifier_RelativeUrl()
@Test
public void testWithResourceTypeAsQualifier_AbsoluteUrl() {

5
src/changes/changes.xml
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@ -207,6 +207,11 @@
Some resource IDs and URLs for LOINC ValueSets and ConceptMaps were inconsistently populated by the
terminology uploader. This has been corrected.
</action>
<action type="fix">
When a resource was updated with a meta.source containing a request id, the meta.source was getting appended
with the new request id, resulting in an ever growing source.meta value. E.g. after the first update, it looks
like "#9f0a901387128111#5f37835ee38a89e2" when it should only be "#5f37835ee38a89e2". This has been corrected.
</action>
</release>
<release version="4.0.3" date="2019-09-03" description="Igloo (Point Release)">
<action type="fix">