Commit Graph

42 Commits

Author SHA1 Message Date
Tadgh 61b5103535
Final hamcrest conversions (#6015)
* wip

* wip

* revert'

* Delete existing things

* docs

* removing last of hamcrest

* removing last of hamcrest

* manual fix

* remove matchers used in awaitility

* remove matchers used in awaitility

* Final checkstyle removals

* Disable suppression rule for mdm checkstyle

* Fix some awaitility, remove dead matchers

* manual fixes

* manual fixes

* filter all hamcrest mentions

---------

Co-authored-by: Ken Stevens <khstevens@gmail.com>
2024-06-18 20:46:09 +00:00
Ken Stevens cdf5b602c1
Replace hamcrest with assertj (#5911)
* optimize imports

* optimize imports

* Hamcrest replacement

* Hamcrest replacement

* Test failures

* migrate hapi-fhir-base

* docs

* Few more cutovers

* Full rewrite of all assert cases

* Full rewrite of all assert cases

* Partial cutover

* assert library conversion

* wip

* fix imports

* remove equalto

* once-over again

* minor cutover

* wip

* wip

* wip

* wip

* wip

* Remove hamcrest asserts replace with assertj

* wip

* Partial hamcrest rip-out

* More hamcrest stripping

* wip

* Partial completion

* spotless

* it compiles now

* fixing compile issues

* fixing compile issues

* fixing compile issues

* fixing compile issues

* fixing compile issues

* fixing compile issues

* fixing compile issues

* fixing compile issues

* fixing compile issues

* fixing compile issues

* fixing compile issues

* fixing compile issues

* fixing compile issues

* fix compile issues

* fix compile issues

* hapi-fhir now compiles

* fix test

* fix test

* fix test

* fix tests

* fix tests

* fix tests

* fix test

* fix test

* fix tests

* fix tests

* fix tests

* yay all tests pass now!

* revert assertEquals change

* revert assertEquals change

* organize imports

* organize imports

* organize imports

* post merge cleanup

* organize imports

* more cleanup

* more cleanup

* removing hamcrest stragglers

* removing hamcrest stragglers

* removing hamcrest stragglers

* removing hamcrest stragglers

* removing hamcrest stragglers

* removing hamcrest stragglers

* removing hamcrest stragglers

* removing hamcrest stragglers

* removing hamcrest stragglers

* removing hamcrest stragglers

* removing hamcrest stragglers

* organize imports

* organize imports

* remove final hamcrest stuff

* remove final hamcrest usages

* remove final hamcrest usages

* Revert "remove final hamcrest usages"

This reverts commit eaf5107396.

* fix compile issues from a hacky search/replace

* compiles with fixmes

* fix tests

* fix test

* fix test

* fix post merge compile issues

* fix post merge compile issues

* fix post merge compile issues

* fix post merge compile issues

* fix post merge compile issues

* fix post merge test issues

* fix test

* fix test

* replace hamcrest with assertj

* replace hamcrest with assertj

* replace hamcrest with assertj

* replace hamcrest with assertj

* replace hamcrest with assertj

* replace hamcrest with assertj

* replace hamcrest with assertj

* replace hamcrest with assertj

* replace hamcrest with assertj

* replace hamcrest with assertj

* replace hamcrest with assertj

* replace hamcrest with assertj

* replace hamcrest with assertj

* replace hamcrest with assertj

* all but mdm tests

* final hamcrest removed from hapi-fhir yay!

* revert mdm changes. it's too hard for now

* revert cdr breaking change

* revert cdr breaking changes

* revert cdr breaking changes

* revert cdr breaking changes

* revert cdr breaking changes

* revert changes that break cdr

* merge master with compile errors

* review feedback

* review feedback

* review feedback: revert bad regexp change

* fix test

* fix test

* convert new hamcrest entries

* convert new hamcrest entries

---------

Co-authored-by: Tadgh <garygrantgraham@gmail.com>
2024-06-05 16:02:46 -04:00
James Agnew 6d58df0f44
Jakarta/Javax Servlet Migration (#5429)
* Servlet migrsation changes

* Apply spotless

* Work on migration

* Start working on JPA migration

* Test fixes

* Test fixes

* Test fixes

* Work

* Work on servlet migration

* Work on migration

* Work on fixes

* Imports fix

* Work on tests

* Test fix

* All tests passing

* Work on migration

* Schema generator

* Refactor ID strategy

* Some test fixes

* Test fixes

* API additions

* Work on websockets

* Test fixe

* Version bump

* Work on migration

* All tests have passed!

* Work on test fixes

* Fixes

* Work on fixes

* CDR fix

* Work on migration

* Fixes

* Spotless

* Disable onetoone ban

* Adjust migratyions

* Transaction service fix

* Add tinyint to migrator

* Work

* Migration

* Compile fix

* Add license

* Test fix

* Test fix

* Cleanup

* Cleanup attempt

* Test fix

* Reslve fixmes

* Remove legacy lastn implementation

* Test cleanup

* Cleanup

* Remove dead import

* Bad import setups

* Review comments

* Review fixes

* Build fix

* Test fix

* Spotless

* Account for CR changes

* Compile fixes

* Rollback one change

* Test tweak

* License header

* Test fix

* Test fix part 2:

* Clean up tx isolation

* Spotless

* Spotless apply

* Drop min SQL Server level

* Attempted test fix

* Test fix

* Test fix

* Test fix

* Bump hibernate

* Test fix

* Test fixes

* Test fixes

* Test fixes

* Test cleanup

* One more test fix

* Test fix

* Try to fix test

* Clean up expunge

* Test fix

* Remove unneeded task

* Spotless

* Bump compiler plugin

* Spotless

* Compile fix

* Add license headers

* License header

* Test fixes

* Bump animal sniffer

* Spotless

* Bump Jetty version

* Test fix and version bump

* Cleanup

---------

Co-authored-by: Tadgh <garygrantgraham@gmail.com>
2023-12-03 11:15:37 -05:00
Ken Stevens 590e6ba88f
use ClasspathUtil (#5263) 2023-08-31 13:23:00 -04:00
Ken Stevens 58850fed82
try removing fork count from surefire (#4752)
* try removing fork count from test-r4

* try removing fork count from the rest of the projects

---------

Co-authored-by: Ken Stevens <ken@smilecdr.com>
2023-04-20 13:58:35 -04:00
michaelabuckley 21b1820294
Demote PHI logging to debug or lower (#4430)
Ensure resource bodies are only logged at debug or lower.

* Drop possible-phi logs to debug.
* Demote request/response log bodies to debug since they may contain PHI.
* Demote job-param logging to debug.
* Add startup hook to App for test injection.
* Change terminology cli logging to avoid logging whole resource.
2023-01-13 15:34:29 +00:00
Patrick Werner 0c5d868f44
encode narratives of contained resources (#3402)
* encode narratives of contained resources
fixes #1466

* encode narratives of contained resources
fixes #1466
2022-02-17 18:54:03 +00:00
Kevin Dougan SmileCDR 646faa10e1
2540 - Upgraded the fhir_core_version from 5.3.0 to 5.3.10 (#2545)
* 2540 - Upgraded the fhir_core_version from 5.3.0 to 5.3.9.

* 2540 - Updated the Unit Test messages due to the upgraded dependencies.

* 2540 - Fixed some additional Unit Test message checks.

* 2540 - Updated the POM to refer to fhir_core_version 5.3.10-SNAPSHOT so a FULL Pipeline Build can run to verify that everything is fixed now.

* 2540 - Added some DEBUG Sysout logging to try and determine why the Pipeline Builds fail for a specific Unit Test when it passes locally...

* 2540 - Added some more logging to try and determine why the Pipeline Builds fail for a specific Unit Test when it passes locally...

* 2540 - Updated a Unit Test to account for a newly returned search param.

* 2540 - Updated a Unit Test to account for a newly returned search param and removed some debug output.
2021-04-29 15:00:37 -04:00
James Agnew f356c7c385
Migrate to JUnit5 (#1952)
* Work on junit

* Work on junit 5

* Work on junit 5

* Bump errorprone vcersion

* Work on tests

* Junit 5 tweaks

* Fixes

* Work on tests

* Work on junit5

* Work on tests

* Test fixes

* Work on junit5

* Test work

* Get junit5 working

* Test fix

* Work on tests

* WOrk on tests

* Work on tests

* fixes

* Compile fix

* One more tweak

* Compile fix

* Add changelog

* Fix compile error

* Compile fix
2020-07-04 18:28:16 -04:00
jamesagnew e0b419354f Bump up hamcrest version and force the use of the latest version 2020-04-17 13:59:22 -04:00
James Agnew 22413911bf
Validation api changes (#1719)
* Validation enhancements

* Work on validation api reworking

* Keep working on validation API

* Keep working on new term API

* Work on validation api

* Ongoing work on validation

* Work on integrating validation

* Work on validation API

* Add to validation API

* Work on validation

* Work on API

* Work on validation

* Work on validation API

* Work on validation API

* Work on validation api

* Work on validation API

* Work on validation api

* Validation API changes

* Work on API

* More work on validationo API

* Work on validation API

* FIxes

* WOrk on validation api

* Work on validation API

* Tests passing!

* More cleanup

* More validation API changes

* Fix intermittent test failure

* Package reorg

* Validation API work

* Work on doocumentation

* Work on API

* More work on new validation API

* Fix errorprone-reported error

* Test fixes

* Documentation updates

* Documentation tweaks

* Work on API

* Bean name adjustments

* Build fixes

* Some test fixes
2020-03-17 13:28:59 -04:00
James Agnew 0a5eca0821 Work on docs 2019-09-22 13:25:50 -04:00
James Agnew eddb98084d Move PreferReturnEnum back to original location to avoid regressions 2019-09-19 15:48:58 -04:00
James Agnew 4a751cbfc5
Integrate Bulk Export (#1487)
* Start working on subscription processor

* Work on new scheduler

* Test fixes

* Scheduler refactoring

* Fix test failure

* One more test fix

* Updates to scheduler

* More scheduler work

* Tests now all passing

* Ongoing work on export

* Ongoing scheduler work

* Ongoing testing

* Work on export task

* Sync master

* Ongoing work

* Bump xml patch version

* Work on provider

* Work on bulk

* Work on export scheduler

* More test fies

* More test fixes

* Compile fix

* Reduce logging

* Improve logging

* Reuse bulk export jobs

* Export provider

* Improve logging in bulk export

* Work on bulk export service

* One more bugfix

* Ongoing work on Bulk Data

* Add changelog
2019-09-17 16:01:35 -04:00
James Agnew 301a8f8432
Merge #1146 - Filter implementation (#1220)
* Initial commit of _filter keyword implementation.

* - Completed all search parameter types for _filter.
- Implemented handling for _has, _id, _security, language, _profile, _security, and _tag.

* - Changes to support "ne" matching on resource ID for _filter

* Implemented language

* Commit/push before creation of pull request

* Ongoing merge work

* Ongoing merge work

* Merge master in

* Test fix
2019-08-12 11:59:33 -04:00
James Agnew 120b93f204
Use HL7 FHIR Core Structures (#1382)
* Ongoing work on core structures suport

* Ongoing work on this merge

* Ongoing work to clean up structures

* Credit for #1179

* Address compile issues

* Latest changes

* Work on parallel execution

* Work on getting tests passing

* Add H2 to migrator

* Test fix
2019-07-14 10:16:40 -04:00
James Agnew 10d969c514
Add Consent Service (#1359)
* Initial consent svc

* Ongoing consent svc work

* Add docs

* Ongoing consent service work

* Work on consent service

* More work on consent svc

* License header updates

* Ongoing consent svc work

* Some test fixes

* Some test fixes

* More work on consent svc

* Tests working

* Test fix

* Propagate RequestDetails to everything in JPA server

* More interceptor tweaks

* Fix compile error

* One more tweak to captured SQL

* Ongoing interceptor tweaks

* Ongoing interceptor tweaks

* More interceptor tweaks

* Interceptor tweaks

* Tweaks to tests

* Fix tests

* Test fix

* Raise warnings when encoding extensions with missing values

* Consent service work

* More interceptor tweaks

* Consent interceptor tweaks

* Add logging to test
2019-06-27 16:35:29 -04:00
jpoth 62f3db03d3 Add parent osgi POM for ease of rebuilding 2019-05-28 13:44:15 +02:00
James Agnew 0f8c8d18e2 Bump version to 3.8.0-SNAPSHOT 2019-02-06 20:02:28 -05:00
jamesagnew 207015c3af Version bump to 3.7.0 2019-02-05 21:36:38 -05:00
James Agnew edb79b8c6a Updates to parser dont encode elements functionality 2019-02-04 16:34:05 -05:00
James Agnew e401ec86e4
Enhanced elements (#1192)
Squashed merge: Add elements exclude mode

* Start working on elements enhancement

* Work on elements projection

* Work on elements filter

* Feature is now working

* Just some cleanup

* Address compile issues
2019-02-03 16:41:33 -05:00
jpoth 1bd63f4454 Add JKD11 support for Karaf 2019-01-09 11:18:42 +01:00
jamesagnew 5bcf62ba44 Enable logging in karaf tests 2018-12-27 10:26:28 -05:00
jpoth cda84c4b3a Karaf related fixes for jdk11 2018-12-22 13:25:09 -05:00
jamesagnew cc57bacab8 Version bump to 3.7.0-SNAPSHOT 2018-11-12 10:07:28 -05:00
James Agnew 63af04a7b4 Prepare for 3.6.0 release 2018-11-12 05:40:55 -05:00
jpoth 5aab142c2f Upgrade PAX Exam to 4.12.0 2018-10-15 17:10:38 +02:00
James Agnew 3e445faf47 Squashed commit of the following:
commit df641506885e09e63f80efc6c658d01a1a3a8142
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sat Sep 29 13:47:22 2018 -0400

    Shrink validation resources

commit 4c1550eafa26f4235b4b8804741aecc03276b5c6
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Sep 28 22:45:28 2018 -0400

    Updates to get R4 working

commit 8332f15291006691ed9b07ead3e3524b0fc85510
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Fri Sep 28 09:02:13 2018 -0400

    Ongoing work on gettign R4 working

commit f7146cab7aed937bb625a8aec95744d76db00041
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Sep 28 05:21:01 2018 -0400

    More work on sync

commit f48de4a10b1bab2584fee813017d9b27b237bfa9
Merge: 9e4f3cc722 aacb78b779
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:11:29 2018 -0400

    Merge branch 'sync_r4' of github.com:jamesagnew/hapi-fhir into sync_r4

commit 9e4f3cc722668aae31a77b19bf9b032af3ae01b0
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:11:19 2018 -0400

    Fix compile error

commit 7ec29e0ceda8f9013cbabb95767cbe15b4b81303
Merge: 23f7517325 002c4b3ff7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:04:23 2018 -0400

    Merge branch 'master' into sync_r4

commit aacb78b7793ab2c71e0a2a774240ee2b5d3f9e7f
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:01:42 2018 -0400

    Keep working on getting R4 building

commit 4950de46d99897e74d41dfdb10d3d8a3435cb0c9
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Tue Sep 25 13:11:27 2018 -0400

    Ongoing work to get R4 working

commit 819d69c20e112dd3c72569ec50114ddb8263c300
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Sep 20 08:15:36 2018 -0400

    Work on getting build working

commit 2c61b6cd1205ced5d7b822cf10942c69272ea078
Merge: 16b5bb06c8 dfb4de86f1
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Sep 20 05:16:53 2018 -0400

    Merge branch 'master' into sync_r4

commit 16b5bb06c8cdaf8d67c3b80f5aa9be9fccd99aef
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Mon Sep 17 05:30:39 2018 -0400

    Work on R4 sync

commit 23f7517325a14dd2ca1eb5641296ead2776634ae
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Sep 16 10:19:00 2018 -0400

    Work on sync

commit 6cc413c1f1dea538295aa4c16c21a5677494ac4c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Sep 14 17:28:28 2018 -0400

    Work on R$ sync

commit df6f6ad2ce783b07ccc383134705d874bc5d2cf1
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Fri Sep 14 08:33:07 2018 -0400

    Work on R4
2018-09-29 13:48:35 -04:00
James Agnew 706e004b9d Bump to 3.6.0-SNAPSHOT 2018-09-19 10:24:48 -04:00
James Agnew daef975734 Version bump to 3.5.0 2018-09-08 07:22:21 +08:00
jamesagnew 0571e2a3fa Downgrade OSGI versions 2018-08-11 16:26:45 -04:00
jamesagnew 64b3b64208 License header updates 2018-08-06 19:06:09 -04:00
James Agnew 58fe4ba3eb Merge branch 'java9' of github.com:jamesagnew/hapi-fhir into java9 2018-05-31 17:09:05 -04:00
James Agnew dfd0381d7f Fewer tests on CI 2018-05-31 17:07:17 -04:00
jamesagnew 2b7e0a87c8 More JDK10 fixes 2018-05-31 16:15:10 -04:00
Diederik Muylwyk 0e2c57fa60 Bumping version. 2018-05-28 17:44:38 -04:00
Diederik Muylwyk 2871920734 Preparing release. 2018-05-28 10:45:47 -04:00
James Agnew a3ff08d9ec
Replace phloc with ph for #775 (#930)
* Replace phloc with ph

* Enable schematron tests

* Make HAPI-FHIR ph-schematron on OSGI

* Work on getting tests passing

* Another test fix

* Fix up transaction handling for DSTU2

* Add changelog

* Avoid double transaction

* Dont use readonly

* One more test fix

* Update to snapshow build

* Resolve a circular dependency

* Try to fix tests

* Solve recurring NPE in DSTU2 tests

* Fix one more test

* Test fix

* More test threading fixes

* One more attempt to get tests passing

* Refactoring for tests

* Refactoring for tests
2018-05-14 17:38:40 -04:00
jamesagnew 180336e076 Sync to master 2018-03-29 06:54:24 -04:00
jamesagnew 418e82032f Prep for 3.3.0 2018-03-29 05:48:13 -04:00
jamesagnew 4ba56d5021 Reorganize the OSGI projects a bit 2018-03-28 06:15:28 -04:00