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365 Commits

Author SHA1 Message Date
longma1 2067ba83ee
minor refactor to extract static string variables into a singel constants class in bulk export (#3117) 
Co-authored-by: Long Ma <longma@Longs-MBP.hitronhub.home>
 2021-10-28 16:04:31 +00:00
James Agnew 5f672bc9e8
Deprecate redundant BaseResourceModifiedMessage myId (#3116) 
* Deprecate redundant BaseResourceModifiedMessage myId

* Add changelog

* Test fix

* Test fix
 2021-10-28 07:55:46 -04:00
StevenXLi 34010fa78d
Batch job refactor (#3087) 
* added AbstractResourceToFileWriter

* Added AbstractBaseBulkItemReader

* added bulkExportStatusEnum fromBatchStatus test

* Code review name change

Co-authored-by: Long Ma <longma@Longs-MBP.hitronhub.home>
Co-authored-by: Steven Li <steven@smilecdr.com>
 2021-10-19 09:07:05 -04:00
JasonRoberts-smile b5e31abf9b
add authorization check to inline matches (#3048) 
* add authorization check to inline matches

* code review feedback: cached results case

* Add query count test

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_6_0/3047-inline-match-security.yaml

Accept code review suggestion

Co-authored-by: James Agnew <jamesagnew@gmail.com>

Co-authored-by: James Agnew <jamesagnew@gmail.com>
 2021-10-18 12:21:26 +00:00
Tadgh b427135b04
Patient/$everything _id parameter (#3077) 
* Add tests. Add implementation in R4. Add changelog

* Wip partial fixup of other STU versions

* Updated usages of new patient type everything api

* Partial commit of incomplete documentation

* Remove docs

* Cut to token instead of string

* Bump hapi version due to breaking api changes
 2021-10-17 14:34:33 +00:00
James Agnew 310a4cdb58
Migrate CLOB columns to LOB (SMILE-3072) (#3016) 
* Migration finished

* Work on LOBS

* Add to ClobMigrated annotation

* Deal with lobs

* Work on new approach

* HAPI FHIR version bump

* Add changelog

* Add license header

* Fix intermittent

* CLeanup

* Cleanup
 2021-10-11 16:47:37 -04:00
James Agnew 756b0fdc7b
Fix transaction scoping (#2799) 
* Work on transaction boundaries

* Test fixes

* Test fixes

* Test fix

* Resolve FIXME

* Test fix

* Test fix

* Test fix

* Test fixes

* Test fix

* Adjust changelog

* Remove unneeded changelog

* Test fix

* Test fixes

* Test fixes

* Test fixes

* Test fixes

* Test fix

* Fixes

* Test fix
 2021-10-11 16:45:22 -04:00
Tadgh bc2cd7cafc
premature optimization is the root of all evil (#3053) 2021-10-06 14:44:39 +00:00
Tadgh 59afbe086c
Allow canonical references to support treating given base URLs as local. (#3050) 
* Add failling test, works on #2843

* Partial hack to get this working

* Move implementation into pre-processing

* Add changelog

* Move implementation

* Minify Test

* Remove fixmes

* Tidying

* Ensure this only operates on STU versions which support canonical
 2021-10-05 11:09:49 -04:00
James Agnew d320b78ae1
Improve synthea ingest performance (#3033) 
* Improve synthea ingest performance

* Tweaks

* Fix param splitting

* Update to test

* Add changelog

* Test fix

* Add some runtime checks

* Remove useless test

* Test fix
 2021-10-04 05:46:06 -04:00
jamesagnew d4f01ac4e7 License header updates 2021-10-03 20:20:04 -04:00
Tadgh 040d09cfa6 Remvoe error in moving code over 2021-09-28 16:43:29 -04:00
Tadgh 7dfe628551 remove parallelism from non-get batch operations 2021-09-27 15:32:03 -04:00
Ken Stevens 0db40c6118 support non-jpa batch 2021-09-24 00:39:15 -04:00
Ken Stevens 53c7476dae
hapi storage (#3024) 
* first pass moving core storage classes to storage-api

* move term service apis

* nearly done

* rename hapi-fhir-storage-api to hapi-fhir-storage and move transaction processor

* rename hapi-fhir-storage-api to hapi-fhir-storage and move transaction processor

* create new SearchConstants class to store platform independent search constants

* move a couple of subscription services

* move transaction processor adapter to storage

* version bump

* move searchparam

* fix test

* fix compile includes

* fix text

* fix docs
 2021-09-23 22:04:46 -04:00