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754 Commits

Author SHA1 Message Date
jamesagnew a5e6674e84 Version bump to 5.5.0-PRE7-SNAPSHOT 2021-07-22 08:41:16 -04:00
IanMMarshall 8b8db82666
Enable Package Loader when partitioning is enabled with unnamed partitions (#2808) 
* Enable Package Loader when partitioning is enabled with unnamed partitions.

* Enable Package Loader when partitioning is enabled with unnamed partitions.

* Additional package loading problems found with partitioning.

* Additional package loading problems found with partitioning.

Co-authored-by: ianmarshall <ian@simpatico.ai>
 2021-07-22 05:17:17 -04:00
James Agnew 6af022062f
Fix issue with partitioning in patient ID compartment mode (#2810) 
* Fix issue with partitioning in patient ID compartment mode

* Add changelog
 2021-07-21 17:21:23 -04:00
Michael Buckley cbb9a4355a Add details when we fail to load an element of a package definition. 2021-07-19 17:59:54 -04:00
Frank Tao 64f1643046
Added LOINC linguistic variants support (#2803) 
* Added linguistic variants for LOINC uploader

* Using static class

* Added the changelog
 2021-07-19 14:17:56 -04:00
Frank Tao 946080d709
Added ConsumerName to the loinc loader. (#2800) 
* Added ConsumerName to the loinc loader.

* Added extra test for coverage

* Added the changelog for LOINC CONSUMER NAME support
 2021-07-16 13:30:42 -04:00
James Agnew 0235296ba7
Add support for bulk export of multiple types (#2797) 
* Add support for bulk export of multiple types

* Add changelog
 2021-07-15 14:01:10 -04:00
Mad Mirrajabi 5f2a3af01e
Add Innovattic B.V. to HAPI FHIR Global Atlas (#2798) 2021-07-15 14:00:33 -04:00
Nick Goupinets 520cec1e15 Fixed link resolution 2021-07-14 11:30:09 -04:00
Tadgh 554685d142 Fix MDM documentation 2021-07-13 16:08:01 -04:00
Tadgh 0a27b08aad
Merge pull request #2783 from hapifhir/2777-hapi-fhir-cli-Add-option-to-pass-request-headers-to-target-server 
Add changelog. Address MR comments.
 2021-07-09 09:35:56 -04:00
Tadgh 218325b385
Add backport info for full diff between 5.4.1 and 5.4.2 (#2784) 2021-07-08 16:25:18 -04:00
juan.marchionatto 1e9163c636 Add changelog. Address MR comments. 2021-07-08 14:52:19 -04:00
James Agnew 95306c3d64
Add NPM validation support module (#2782) 
* Add NPM validation support module

* Add changelog
 2021-07-07 16:28:41 -04:00
Tadgh 3e7bc2a81e
Forward port 5 4 2 (#2781) 
* Add new version to enum

* Add backport tags, new VersionEnum, and new release folder for 5.4.2
 2021-07-07 10:10:07 -04:00
James Agnew d762a07817
Partition patient interceptor (#2766) 
* Start work on interceptor

* Implemented

* Add interceptor and docs

* Add docs

* Compile fix

* Test fixes

* Test cleanup

* Test fixes

* Test fixes

* Improve error message

* Add broken tests

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2766-add-patient-id-compartment-interceptor.yaml

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/interceptor/PatientIdPartitionInterceptor.java

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

* Address review comments

Co-authored-by: Tadgh <garygrantgraham@gmail.com>
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
 2021-07-05 09:15:20 -04:00
Tadgh a4fb72975d
Merge pull request #2767 from hapifhir/2765-mdm-paging 
Paging implementation for MDM query links operation
 2021-07-01 23:16:47 -04:00
Tadgh 0a4a50f0a8 update docs 2021-07-01 17:05:14 -04:00
Ken Stevens b1334241c7
change out-of-order flag to switch-order flag so the default behaviour reverses (#2773) 
* change out-of-order flag to switch-order flag so the default behaviour reverses

* change log
 2021-07-01 15:17:39 -04:00
michaelabuckley 7aba83293a
Merge pull request #2771 from hapifhir/issue-2768-convert-mdm-submit-to-spring-batch 
$mdm-submit operation was only submitting 100 resources ...
 2021-06-30 16:14:01 -04:00
Tadgh f66f9b992e Bump pre-version as this will break downstream implementations 2021-06-30 15:37:19 -04:00
Tadgh f33696a165 Add changelog 2021-06-30 15:24:29 -04:00
Tadgh 883337a9f4 Tidying 2021-06-30 14:55:57 -04:00
Tadgh 91dee55279 Correct docs 2021-06-30 14:49:37 -04:00
Michael Buckley fa750d209e $mdm-submit operation was only submitting 100 resources and then stopping. 
It now correctly submits all requested resources.
 2021-06-30 14:48:28 -04:00
Tadgh 8f3cbb0a7f Refactor docs 2021-06-30 14:48:13 -04:00
Clark Van Oyen 4a1b836582
Add Cortico to HAPI FHIR Global Atlas (#2769) 
Cortico uses HAPI FHIR to help medical providers engage seamlessly with patients over video, email and SMS.
 2021-06-30 08:36:38 -04:00
Ken Stevens 795fb31a3a
fixed mdm rules (#2764) 
* fixed mdm rules

* changelog

* review feedback jetbrains

* review feedback
 2021-06-28 23:24:37 -04:00
Ken Stevens 9500a1a7de
fix false rule matches (#2762) 
* fixed an issue with matching compartments to lists of ids

* change log

* Added extra guards against false rule matches.

* changelog

* fix inCompartment

* cleanup
 2021-06-27 10:34:32 -04:00
Ken Stevens 5565bf9930
fixed an issue with matching compartments to lists of ids (#2761) 
* fixed an issue with matching compartments to lists of ids

* change log
 2021-06-26 20:24:28 -04:00
Ken Stevens ea98e62656
collapse multiple owners for same compartment into shared compartment (#2760) 
* collapse multiple owners for same compartment into shared compartment

* changelog

* fix regression

* fix regression

* pre-review cleanup

* pre-review cleanup
 2021-06-26 11:48:47 -04:00
michaelabuckley 110173dafb
Merge pull request #2757 from hapifhir/2091-MemoryCacheService-confused-expiry 
Fix units on cache expiry
 2021-06-25 14:29:43 -04:00
michaelabuckley f1b8802f45
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2758-fix-cache-expiry-units.yaml 
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
 2021-06-25 14:19:04 -04:00
James Agnew 7185089c9d
Add forced offset search JPA interceptor (#2756) 
* Add support for offset searches

* Tests working

* Add changelog

* Test fixes

* Test fix

* More test fixes

* Add commit counter
 2021-06-25 10:40:39 -04:00
Michael Buckley 1367e61c93 changelog 2021-06-24 19:13:54 -04:00
Josiah a9208a88da Revert "Version bump" 
This reverts commit 1f5fa70fb6.
 2021-06-24 11:48:31 -04:00
Josiah 1f5fa70fb6 Version bump 2021-06-24 11:22:35 -04:00
Josiah 2cc27d9b4f Forgot changelog 2021-06-24 10:19:45 -04:00
jamesagnew 59653759ed Update tests 2021-06-23 15:58:14 -04:00
Nick Goupinets 6feaa12593
Merge pull request #2747 from hapifhir/2746_npe_in_mdm_utils 
Added null checks
 2021-06-23 09:51:53 -04:00
jamesagnew e3158045aa License header 2021-06-22 23:25:36 -04:00
James Agnew 8379392e16
Add inline tag mode (#2748) 
* Start work on tag mode 3

* Add changelog

* Test fix
 2021-06-22 23:08:09 -04:00
Nick Goupinets 9caa5e68fc Added changelog 2021-06-22 15:52:21 -04:00
Josiah 912b44c3fa
Merge pull request #2734 from hapifhir/2732-bump-conceptmap-group-element-display-storage-size 
Address #2732
 2021-06-21 08:33:36 -04:00
James Agnew 6ea1438f1d
Add transaction write semaphore interceptor (#2743) 
* Add transaction write semaphore interceptor

* Add changelog

* Test fix
 2021-06-20 12:55:49 -04:00
Ken Stevens 32ac16e2aa
add a limit to mdm candidate searches (#2742) 
* done

* verbal review feedback

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2739-max-mdm-matches.yaml

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

* review feedback

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
 2021-06-18 20:48:34 -04:00
James Agnew 8b205b23d0
Fix history paging (#2741) 
* Fix history paging

* Add changelog

* Add license header
 2021-06-18 17:47:51 -04:00
Ken Stevens 097a2f70b3
add partition support to $evaluate-measure (#2736) 
* Finished adding partition support to $evaluate-measure

* review feedback
 2021-06-18 14:22:57 -04:00
Josiah 164e684d7c Merge branch 'master' into 2732-bump-conceptmap-group-element-display-storage-size 2021-06-17 15:14:05 -04:00
Josiah 324201b105 Make change 2021-06-17 11:28:02 -04:00