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1944 Commits

Author SHA1 Message Date
James Agnew c8ce07c40e Deprecate redundant IVersionSpecificBundleProvider method 2019-09-30 09:45:31 -04:00
James Agnew 557a8ccc66
Add top level support for ElasticSearch (#1514) 
* ElasticSearch work

* Add ElasticSearch properties builder

* Clean up POM

* Remove redundant project

* Try to troubleshoot embedded elasticsearch

* Another test attempt

* Add credentials to elasticsearch config

* Work on lastn

* Address review comments

* A couple of test fixes
 2019-09-30 09:30:39 -04:00
James Agnew 3870c14a6c Remove unused contructors 2019-09-26 16:42:39 -04:00
James Agnew cc0df9850c Make sure the validator can get at codes defined in notpresent 
codesystems
 2019-09-26 14:44:09 -04:00
James Agnew 8657afb01e
Fix intermittent test failures regarding search (#1509) 
* Add some logging

* Add more test logging

* Work on some test logging

* Fix compile error

* Work on codecov

* Work on codecov

* Remove test debug messages
 2019-09-25 20:15:21 -04:00
jamesagnew 473fa3456e Work on adding codecov 2019-09-25 14:12:42 -04:00
James Agnew dfe07e7a2b Avoid concurrency issue introduced by #1489 2019-09-25 13:45:02 -04:00
James Agnew 7b363c2c5c Some test fixes 2019-09-24 15:28:14 -04:00
James Agnew 9b2826f3c6
Handle searches with chained slash value (#1503) 
* Work on test case for bug with searches

* Work on tests

* Fix issue with slashes in reference chain parameter for JPA server
 2019-09-24 14:31:05 -04:00
jamesagnew 936587df6e Work on migrating docs 2019-09-22 15:52:49 -04:00
James Agnew 0a5eca0821 Work on docs 2019-09-22 13:25:50 -04:00
James Agnew a989a746b0 Fix #1494 - Upgrade to new :recurse syntax for R4 include/revinclude 
statements
 2019-09-20 09:38:29 -04:00
David Maplesden c2c07c95fc We can't short circuit traversal after all. 2019-09-19 20:38:30 -04:00
David Maplesden c8c8ab6881 Add modifier extensions to tha actual modifier extensions collection 2019-09-19 20:38:30 -04:00
David Maplesden 946f3a1732 Cut short traversal when finding top-level base references 2019-09-19 20:38:30 -04:00
David Maplesden 4021fccf3b We only need to extract the existing contained resources once 2019-09-19 20:38:30 -04:00
David Maplesden 1f253856cf Optimise for encoding String primitive data types 
We typically have many more string primitives than anything else
 2019-09-19 20:38:30 -04:00
David Maplesden 8b84b8ffea Cache the composite children that need encoding to improve performance 2019-09-19 20:38:30 -04:00
David Maplesden 5120fe795e Dramatically improve the performance of containResourcesForEncoding 
We do this by avoiding the double processing of contained resources when
looking for resources to contain
 2019-09-19 20:38:30 -04:00
jamesagnew 6475146bc9 Add license headers 2019-09-19 18:08:21 -04:00
James Agnew eddb98084d Move PreferReturnEnum back to original location to avoid regressions 2019-09-19 15:48:58 -04:00
James Agnew 2be63a1650 Test fixes 2019-09-19 09:45:07 -04:00
James Agnew 30dfde645b Upgrade to Fontawesdome 5 and prevent uploading resources with binary 
storage extensions
 2019-09-19 05:28:05 -04:00
James Agnew 6b21e8cd90 Add some testing to the bulk export service 2019-09-18 14:43:00 -04:00
James Agnew 4a751cbfc5
Integrate Bulk Export (#1487) 
* Start working on subscription processor

* Work on new scheduler

* Test fixes

* Scheduler refactoring

* Fix test failure

* One more test fix

* Updates to scheduler

* More scheduler work

* Tests now all passing

* Ongoing work on export

* Ongoing scheduler work

* Ongoing testing

* Work on export task

* Sync master

* Ongoing work

* Bump xml patch version

* Work on provider

* Work on bulk

* Work on export scheduler

* More test fies

* More test fixes

* Compile fix

* Reduce logging

* Improve logging

* Reuse bulk export jobs

* Export provider

* Improve logging in bulk export

* Work on bulk export service

* One more bugfix

* Ongoing work on Bulk Data

* Add changelog
 2019-09-17 16:01:35 -04:00
James Agnew 08835c1615 FIx a failure in FhirTerser when visiting custom types 2019-09-13 09:11:47 -04:00
Ken Stevens abef4455eb done 2019-09-09 17:22:07 -04:00
Ken Stevens 7cfbf710fe Merge remote-tracking branch 'remotes/origin/master' into ks-in-memory-date-compare 
# Conflicts:
#	src/changes/changes.xml
 2019-09-09 14:46:25 -04:00
Ken Stevens 9e83f1d40a changelog 2019-09-09 14:22:42 -04:00
James Agnew 722c7a8211 Work on GraphQL updates 2019-09-06 14:56:17 -04:00
jamesagnew 1ef70a0fca Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-03 07:02:09 -04:00
jamesagnew 8b09b3f3eb Rename config enum for consistency 2019-09-03 07:01:36 -04:00
Diederik Muylwyk 9f7cf3923b
Merge pull request #1458 from jamesagnew/1457-valueset-pre-expansion-need-to-account-for-existing-valuesets-and-user-assigned-ids 
Resolve "ValueSet pre-expansion - need to account for existing ValueSets and user-assigned IDs."
 2019-08-30 10:48:39 -04:00
Diederik Muylwyk 8ef9c61b83 Address review comments; improve logging. 2019-08-30 10:47:21 -04:00
Diederik Muylwyk e03d6a5d47 Fixed handling of pre-expansion in light of pre-existing, non-pre-expanded ValueSets. 2019-08-29 18:09:30 -04:00
James Agnew c5a88444b6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-08-29 14:00:37 -04:00
James Agnew 956bb39327 Resolve an inefficient regex expression 2019-08-29 13:59:31 -04:00
Diederik Muylwyk b41926307c Completed work on large ValueSet expansion support; ready for review. 2019-08-23 17:40:45 -04:00
Diederik Muylwyk 890555a77d Incremental work on large ValueSet expansion support; transaction boundaries need to be broken up. 2019-08-23 11:46:32 -04:00
Diederik Muylwyk 97a235ddfc Merging master into working branch. 
# Conflicts:
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/DaoConfig.java
 2019-08-22 14:02:56 -04:00
James Agnew 9428430822
Add support for Resource.meta.source (#1438) 
* Work on indexing source

* Work on tests

* Refactor query count tests

* Unit test fixes

* Add some tests

* DAO fix

* Fix compile error

* Unit test fix

* Cleanup

* Test fix

* Fix compile error

* One more test fix
 2019-08-21 11:17:43 -04:00
James Agnew ce44115152
Handle cascading deletes correctly with circular references (#1435) 
* Handle cascading deletes correctly with circular references

* A bit of cleanup

* Address review comments

* FIx some javadocs

* Fix an incorrect message
 2019-08-20 10:08:34 -04:00
Diederik Muylwyk 8590e0ca4d Merging master into working branch. 
# Conflicts:
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/DaoConfig.java
 2019-08-19 02:28:30 -04:00
Diederik Muylwyk dfd098c374 Incremental work on large ValueSet expansion support; added use of terminology tables when expanding. 2019-08-19 02:26:12 -04:00
James Agnew 57c6064d89 Another test fix 2019-08-17 12:21:08 -04:00
James Agnew 74c83f6148 Test fixes 2019-08-17 12:01:04 -04:00
James Agnew 1e07fcd2b3
Fix an unintended regression in #1357 (#1429) 
* Start working on a tweak to #1357 - Not yet complete

* Tweaks to avoid an unintended regression from #1357
 2019-08-15 08:35:50 -04:00
Ken Stevens f29c37a654 added IBaseReference constructor to TokenParam 2019-08-14 15:33:50 -04:00
jamesagnew 2d35db877e Add version constant 2019-08-14 15:03:05 -04:00
jamesagnew e1b43d811f Version bump to 4.1.0-SNAPSHOT 2019-08-14 14:06:06 -04:00