VK-SMILECDR
1e0f843d6c
2852 - Simplify java mail code ( #2874 )
...
* testing
* [2852] adding SimpleJavaEmail
* [2852] refactor email sender code
* [2852] dependency cleanup
* [2852] add missing dependency
* [2852] add missing spring framework test dependency
* [2852] add change log
* [2852] add change log
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2852-simplify-java-mail-code.yaml
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* [2852] minor test code cleanup
* [2852] add more tests
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2021-08-09 15:59:47 -04:00
Tadgh
4fadc62066
Bump Hapi Version
2021-08-06 13:44:04 -04:00
Tadgh
0a303a0e11
Add MDM expansion by golden pid
2021-08-06 13:22:08 -04:00
Kevin Dougan SmileCDR
35d3e3689b
2829 - Add DSTU3 Support To UploadTerminologyCommand ( #2832 )
2021-08-05 13:07:50 -04:00
juan.marchionatto
1ff1954cba
Merge branch 'master' into issue-2786-upload-terminology-command-add-explicit-current-version-control
2021-07-30 11:20:23 -04:00
Ken Stevens
f5dfc3a5ed
New reindex spring batch operation ( #2845 )
...
* first sweep to add new $reindex job
* first cut done. next up integration test.
* start roughing out reindex everything
* Failing test
* test passes
* add BundleUtil helper method
* rough in processEverything
* rough in processEverything
* fix mock test
* merge master
* Make BaseJpaTest.mySrd lenient.
* fix test
* reindex everything works with FIXMEs
* reindex everything more tests
* moar tests
* moar tests
* fix test
* fix test
* fix regression and fix test
* fix test cycle
* fixme
* fix test
* test provider layer
* reindex everything partition aware
* yay last fixme!
* run reindex in partitioned threads
* add fixmes for areas that require extra testing
* added transaction and log message
* manual integration testing
* changelog
* reindex all partitions
* bump hapi version
* fix test
* moar test
* pre-review cleanup
* fix javadoc
* review feedback
* review feedback
* review feedback
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2845-reindex-operation.yaml
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* review feedback
* review feedback
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/delete/job/ReindexJobTest.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/delete/job/ReindexJobTest.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/MultitenantBatchOperationR4Test.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/MultitenantBatchOperationR4Test.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/ResourceSearch.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-server/src/main/java/ca/uhn/fhir/rest/api/server/storage/IDeleteExpungeJobSubmitter.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
2021-07-29 19:18:49 -04:00
juan.marchionatto
264dfee099
Merge branch 'master' into issue-2786-upload-terminology-command-add-explicit-current-version-control
2021-07-29 16:21:56 -04:00
juan.marchionatto
1fcb36d84a
Fix implementation to work also for use case where version is being updated.
...
Use property instead of parameter.
2021-07-29 15:54:00 -04:00
Tadgh
e076b30eef
bump Jetty for CVEs
2021-07-27 15:49:00 -04:00
James Agnew
f957661dda
Patient ID Partition Mode should support conditional create ( #2828 )
...
* Fixes
* Test fix
* Add changelog
* Test fixes
* Test fixes
* Docs tweak
* Partitioning fixes
* Import fix
* Fix test data
2021-07-26 14:18:58 -04:00
Ken Stevens
6bbb403fd1
When Client Id Strategy is set to NOT_ALLOWED, permit system requests to create resources ( #2827 )
...
* resolved 2826
* fix regression
2021-07-23 19:10:19 -04:00
Ken Stevens
92ec113775
fixed bug ( #2824 )
2021-07-23 16:58:53 -04:00
Michael Buckley
2539f49662
Add detail to changelog
2021-07-23 15:07:36 -04:00
Michael Buckley
d99f94e665
changelog
2021-07-23 15:00:48 -04:00
juan.marchionatto
ad6f7a204c
Fix changelog syntax. Merge current master.
2021-07-22 10:49:16 -04:00
juan.marchionatto
ae0665131b
Fix syntax.
2021-07-22 09:41:16 -04:00
jamesagnew
a5e6674e84
Version bump to 5.5.0-PRE7-SNAPSHOT
2021-07-22 08:41:16 -04:00
IanMMarshall
8b8db82666
Enable Package Loader when partitioning is enabled with unnamed partitions ( #2808 )
...
* Enable Package Loader when partitioning is enabled with unnamed partitions.
* Enable Package Loader when partitioning is enabled with unnamed partitions.
* Additional package loading problems found with partitioning.
* Additional package loading problems found with partitioning.
Co-authored-by: ianmarshall <ian@simpatico.ai>
2021-07-22 05:17:17 -04:00
James Agnew
6af022062f
Fix issue with partitioning in patient ID compartment mode ( #2810 )
...
* Fix issue with partitioning in patient ID compartment mode
* Add changelog
2021-07-21 17:21:23 -04:00
juan.marchionatto
e0e52c666c
Add current-version parameter to upload-terminology command.
2021-07-21 16:18:35 -04:00
Michael Buckley
cbb9a4355a
Add details when we fail to load an element of a package definition.
2021-07-19 17:59:54 -04:00
Frank Tao
64f1643046
Added LOINC linguistic variants support ( #2803 )
...
* Added linguistic variants for LOINC uploader
* Using static class
* Added the changelog
2021-07-19 14:17:56 -04:00
Frank Tao
946080d709
Added ConsumerName to the loinc loader. ( #2800 )
...
* Added ConsumerName to the loinc loader.
* Added extra test for coverage
* Added the changelog for LOINC CONSUMER NAME support
2021-07-16 13:30:42 -04:00
James Agnew
0235296ba7
Add support for bulk export of multiple types ( #2797 )
...
* Add support for bulk export of multiple types
* Add changelog
2021-07-15 14:01:10 -04:00
Mad Mirrajabi
5f2a3af01e
Add Innovattic B.V. to HAPI FHIR Global Atlas ( #2798 )
2021-07-15 14:00:33 -04:00
Nick Goupinets
520cec1e15
Fixed link resolution
2021-07-14 11:30:09 -04:00
Tadgh
554685d142
Fix MDM documentation
2021-07-13 16:08:01 -04:00
Tadgh
0a27b08aad
Merge pull request #2783 from hapifhir/2777-hapi-fhir-cli-Add-option-to-pass-request-headers-to-target-server
...
Add changelog. Address MR comments.
2021-07-09 09:35:56 -04:00
Tadgh
218325b385
Add backport info for full diff between 5.4.1 and 5.4.2 ( #2784 )
2021-07-08 16:25:18 -04:00
juan.marchionatto
1e9163c636
Add changelog. Address MR comments.
2021-07-08 14:52:19 -04:00
James Agnew
95306c3d64
Add NPM validation support module ( #2782 )
...
* Add NPM validation support module
* Add changelog
2021-07-07 16:28:41 -04:00
Tadgh
3e7bc2a81e
Forward port 5 4 2 ( #2781 )
...
* Add new version to enum
* Add backport tags, new VersionEnum, and new release folder for 5.4.2
2021-07-07 10:10:07 -04:00
James Agnew
d762a07817
Partition patient interceptor ( #2766 )
...
* Start work on interceptor
* Implemented
* Add interceptor and docs
* Add docs
* Compile fix
* Test fixes
* Test cleanup
* Test fixes
* Test fixes
* Improve error message
* Add broken tests
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2766-add-patient-id-compartment-interceptor.yaml
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/interceptor/PatientIdPartitionInterceptor.java
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Address review comments
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2021-07-05 09:15:20 -04:00
Tadgh
a4fb72975d
Merge pull request #2767 from hapifhir/2765-mdm-paging
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Paging implementation for MDM query links operation
2021-07-01 23:16:47 -04:00
Tadgh
0a4a50f0a8
update docs
2021-07-01 17:05:14 -04:00
Ken Stevens
b1334241c7
change out-of-order flag to switch-order flag so the default behaviour reverses ( #2773 )
...
* change out-of-order flag to switch-order flag so the default behaviour reverses
* change log
2021-07-01 15:17:39 -04:00
michaelabuckley
7aba83293a
Merge pull request #2771 from hapifhir/issue-2768-convert-mdm-submit-to-spring-batch
...
$mdm-submit operation was only submitting 100 resources ...
2021-06-30 16:14:01 -04:00
Tadgh
f66f9b992e
Bump pre-version as this will break downstream implementations
2021-06-30 15:37:19 -04:00
Tadgh
f33696a165
Add changelog
2021-06-30 15:24:29 -04:00
Tadgh
883337a9f4
Tidying
2021-06-30 14:55:57 -04:00
Tadgh
91dee55279
Correct docs
2021-06-30 14:49:37 -04:00
Michael Buckley
fa750d209e
$mdm-submit operation was only submitting 100 resources and then stopping.
...
It now correctly submits all requested resources.
2021-06-30 14:48:28 -04:00
Tadgh
8f3cbb0a7f
Refactor docs
2021-06-30 14:48:13 -04:00
Clark Van Oyen
4a1b836582
Add Cortico to HAPI FHIR Global Atlas ( #2769 )
...
Cortico uses HAPI FHIR to help medical providers engage seamlessly with patients over video, email and SMS.
2021-06-30 08:36:38 -04:00
Ken Stevens
795fb31a3a
fixed mdm rules ( #2764 )
...
* fixed mdm rules
* changelog
* review feedback jetbrains
* review feedback
2021-06-28 23:24:37 -04:00
Ken Stevens
9500a1a7de
fix false rule matches ( #2762 )
...
* fixed an issue with matching compartments to lists of ids
* change log
* Added extra guards against false rule matches.
* changelog
* fix inCompartment
* cleanup
2021-06-27 10:34:32 -04:00
Ken Stevens
5565bf9930
fixed an issue with matching compartments to lists of ids ( #2761 )
...
* fixed an issue with matching compartments to lists of ids
* change log
2021-06-26 20:24:28 -04:00
Ken Stevens
ea98e62656
collapse multiple owners for same compartment into shared compartment ( #2760 )
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* collapse multiple owners for same compartment into shared compartment
* changelog
* fix regression
* fix regression
* pre-review cleanup
* pre-review cleanup
2021-06-26 11:48:47 -04:00
michaelabuckley
110173dafb
Merge pull request #2757 from hapifhir/2091-MemoryCacheService-confused-expiry
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Fix units on cache expiry
2021-06-25 14:29:43 -04:00
michaelabuckley
f1b8802f45
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2758-fix-cache-expiry-units.yaml
...
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2021-06-25 14:19:04 -04:00
James Agnew
7185089c9d
Add forced offset search JPA interceptor ( #2756 )
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* Add support for offset searches
* Tests working
* Add changelog
* Test fixes
* Test fix
* More test fixes
* Add commit counter
2021-06-25 10:40:39 -04:00
Michael Buckley
1367e61c93
changelog
2021-06-24 19:13:54 -04:00
Josiah
a9208a88da
Revert "Version bump"
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This reverts commit 1f5fa70fb6
.
2021-06-24 11:48:31 -04:00
Josiah
1f5fa70fb6
Version bump
2021-06-24 11:22:35 -04:00
Josiah
2cc27d9b4f
Forgot changelog
2021-06-24 10:19:45 -04:00
jamesagnew
59653759ed
Update tests
2021-06-23 15:58:14 -04:00
Nick Goupinets
6feaa12593
Merge pull request #2747 from hapifhir/2746_npe_in_mdm_utils
...
Added null checks
2021-06-23 09:51:53 -04:00
jamesagnew
e3158045aa
License header
2021-06-22 23:25:36 -04:00
James Agnew
8379392e16
Add inline tag mode ( #2748 )
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* Start work on tag mode 3
* Add changelog
* Test fix
2021-06-22 23:08:09 -04:00
Nick Goupinets
9caa5e68fc
Added changelog
2021-06-22 15:52:21 -04:00
Josiah
912b44c3fa
Merge pull request #2734 from hapifhir/2732-bump-conceptmap-group-element-display-storage-size
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Address #2732
2021-06-21 08:33:36 -04:00
James Agnew
6ea1438f1d
Add transaction write semaphore interceptor ( #2743 )
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* Add transaction write semaphore interceptor
* Add changelog
* Test fix
2021-06-20 12:55:49 -04:00
Ken Stevens
32ac16e2aa
add a limit to mdm candidate searches ( #2742 )
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* done
* verbal review feedback
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2739-max-mdm-matches.yaml
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* review feedback
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2021-06-18 20:48:34 -04:00
James Agnew
8b205b23d0
Fix history paging ( #2741 )
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* Fix history paging
* Add changelog
* Add license header
2021-06-18 17:47:51 -04:00
Ken Stevens
097a2f70b3
add partition support to $evaluate-measure ( #2736 )
...
* Finished adding partition support to $evaluate-measure
* review feedback
2021-06-18 14:22:57 -04:00
Josiah
164e684d7c
Merge branch 'master' into 2732-bump-conceptmap-group-element-display-storage-size
2021-06-17 15:14:05 -04:00
Josiah
324201b105
Make change
2021-06-17 11:28:02 -04:00
James Agnew
659efa786c
ValueSet Expansion Should Preserve Order ( #2724 )
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* Add test
* FIxed
* Add changelog
* Add test
* Intermittent test failure fix
* Build fix
* Build fix
* Test fix
* Test fixes
* Fix checkstyle issue
* Test fix
* Add test logging
2021-06-16 07:20:59 -04:00
Ken Stevens
134631fdee
Convert delete expunge to use Spring Batch ( #2697 )
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* prepare to add $delete-expunge operation that will create a spring batch job
* Add operation
* Wire up jpa provider. Begin with failing test.
* Copy/paste bulk import job as a starting point.
FIXME with proposed design
* delete expunge job parameter validation with test
* implemented reader
stubbed processor, writer
* wip for master merge
* started implementing reader
* started implementing reader
* working with stubs
* happy path batch delete expunge is done
* Provider done but test not passing. Guessing batch infrastructure not running in that test.
* IT test works now
* add reader test
* Converted delete _expunge=true to use new batch job
* DeleteExpungeDaoTest passes
* Fix test
* Change batch size to integer
* rename search count to batch size
* Make delete expunge partition aware
* updated docs
* pre-review cleanup
* change log
* add partition id to SystemRequestDetails
* Make RequestPartitionId serializable
* Change delete expunge provider to use partition id instead of tenant name
* fix tests
* test pointcut gets called
* assert on pointcut calls
* Add resource type to STORAGE_PARTITION_SELECTED pointcut
* bump hapi-fhir version
move expunge provider parameters from JpaConstants to ProviderConstants
* bump hapi-fhir version
* copyrights
* restore deleteexpungeservice for mdm
* restore deleteexpungeservice for mdm
* fix test
* public constants
* convert instant to date
* Moved expunge constants to ProviderConstants
* final review
* disabling InMemoryResourceMatcherR5Test.testNowNextMinute() to see if I can get a clean test run
* fix tests
* fix tests
* fix tests
* fix tests
* review feedback
* review feedback
* review feedback
* review feedback
* review feedback
* review feedback
* improve logging
* bump version
* version bump
* recovering from failed merge
* unzip RequestListJson per Gary's suggestion. I didn't want to do it at first, but as usual Gary was right.
* fix serialization
2021-06-15 10:36:05 -04:00
jamesagnew
376a84d213
Version bump
2021-06-14 13:12:34 -04:00
James Agnew
b934abb297
Impropve transaction Performance ( #2717 )
...
* Work on changes
* Work on perf
* Work on testing
* Work on perf
* Work on perf
* Work on fix
* Work on perf
* Ongoing work
* Add changelog
* Additional docs
* Test fixes
* Address review comments
* Test fix
2021-06-14 13:08:19 -04:00
jamesagnew
48eea5a7cc
Prepare changelog for 5.4.1 release
2021-06-14 09:13:41 -04:00
jamesagnew
474cca877a
Merge branch 'rel_5_4_2'
2021-06-14 09:07:26 -04:00
jmarchionatto
39d7d4ad03
Use pageSize variable to hold page size ( #2719 )
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* Use pageSize variable to hold page size as previously used variable has other function, so not always hols intended value required for previous link
* Adjust test to standards and use RestfulServerExtension instead of own server
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
2021-06-11 17:29:14 -04:00
jamesagnew
090dc9a2e2
Docs
2021-06-11 15:55:35 -04:00
James Agnew
fcb32eacb6
Add support for loinc 2.70 ( #2721 )
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* Add support for loinc 2.70
* Add changelog
2021-06-11 15:15:22 -04:00
James Agnew
dc627dc019
Add bulk export authorization layer ( #2712 )
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* Add bulk export authorization layer
* Add docs
* Version bump
* Authorize any
* Add bulk export - all
* Address lgtm issue
2021-06-06 20:47:43 -04:00
James Agnew
62be623cf5
Add support for ICD-10-CM ( #2702 )
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* Add support for ICD-10-CM
* Have this working
* Fix LGTM issues
* Test fix
2021-06-03 19:55:16 -04:00
Ken Stevens
94d6b15db9
_filter searchparam should not appear in cap stmt if disabled ( #2706 )
...
* issue reproduced and fixed
* changelog
* cleanup
2021-06-03 18:45:49 -04:00
Ken Stevens
c498522c78
search by source reported incorrect size ( #2705 )
...
* issue reproduced in test and fixed
* changelog
2021-06-03 18:19:43 -04:00
James Agnew
fe763dd2d6
Upgrade deps ( #2695 )
...
* Upgrade deps
* Fix build error
* Branch tweak
* Build fix
* Build fix
* Undo bump
* Test fixes
2021-06-01 12:03:29 -04:00
jamesagnew
f5c75e80de
Credit for #2693
2021-06-01 10:53:53 -04:00
James Agnew
05ac88bc21
Add initiate bulk export pointcut ( #2692 )
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* Add initiate bulk export pointcut
* Add changelog
* Test fixes
2021-05-31 16:05:09 -04:00
Patrick Werner
94bd2400e3
Merge pull request #2689 from me-d4l/fix/update-chaelog-for-2682
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Add CHANGELOG entry for ticket 2682
2021-05-31 12:16:13 +02:00
morten.ernebjerg
b9931dfb03
Add CHANGELOG entry for ticket 2682
2021-05-31 08:43:23 +02:00
James Agnew
a2950324ef
Avoid SQL based transaction dupe check ( #2688 )
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* Avoid SQL based transaction dupe check
* Add changelog
* Test fixes
* Test fixes
2021-05-30 20:26:36 -04:00
James Agnew
786112284b
Bump spring version ( #2687 )
2021-05-30 19:04:14 -04:00
James Agnew
24b3f0f30d
Enable mass ingestion mode ( #2681 )
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* Work on fixes
* Work on counts
* Enable mass ingestion mode
* Add changelog
* Test fix
* Test fix
* Test fixes
* Fixes
* Test fix
* Test fix
2021-05-27 18:43:51 -04:00
James Agnew
c8c596aff4
Fix date search on period with no end ( #2676 )
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* Add test
* Working test
* Update test
* Account for date fixes
* Add changelog
* Add setting
* Test fixes
* Test fix
2021-05-26 21:03:53 -04:00
James Agnew
7a83c76e65
Add validation suppression mode ( #2675 )
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* Add validation suppression mode
* Add changelog
* Compile fix
2021-05-26 17:41:48 -04:00
Ken Stevens
af44b9c7a0
Ks 20210526 accurate total ( #2677 )
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* begin with failing test
* fixed
* changelog
2021-05-26 12:20:49 -04:00
ianmarshall
1b387a5740
Add null check on code lookup result.
2021-05-24 22:14:02 -04:00
James Agnew
2c722e64c2
Add support for including qualified star syntax ( #2672 )
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* Add support for including qualified star syntax
* Add changelog
* Add docs
* Build fix
2021-05-23 16:50:37 -04:00
jamesagnew
ff2698d4d1
Merge branch 'rel_5_4'
2021-05-19 09:22:11 -04:00
jamesagnew
bd372e4bd8
Fix changelog
2021-05-19 08:34:24 -04:00
James Agnew
2badae2097
Avoid contained resource in conditional create ( #2665 )
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* Work on unexpected contained resources
* Avoid contained on conditional create
* Add changelog
2021-05-19 07:49:59 -04:00
jamesagnew
b463b072c8
Test fixes
2021-05-18 21:32:13 -04:00
jamesagnew
de56f440cb
Version bump
2021-05-18 17:14:14 -04:00
Tadgh
22a1a05cfb
Add changelog
2021-05-18 10:05:59 -04:00
James Agnew
7a50454350
Correct index init issue ( #2662 )
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* Correct index init issue
* Add changelog
2021-05-17 20:31:44 -04:00
jamesagnew
926bf393d3
Merge branch 'rel_5_4'
2021-05-17 09:10:58 -04:00
James Agnew
40ecafcd31
Don't unescape plus in match URLs ( #2658 )
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* Don't unescape plus in match URLs
* Perf improvements
* Add changelog
* Test fix
* Work on tests
* Fixes
* Test fix
2021-05-16 21:51:23 -04:00
James Agnew
b31bb945ad
Add include clause to MSSQL forcedid table index ( #2659 )
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* Add include clause to MSSQL forcedid table index
* Add changelog
* Test fix
* Bump MSSQL version
2021-05-16 19:14:51 -04:00
Tadgh
57bb11797e
fix
2021-05-13 15:46:26 -04:00
Tadgh
15ea4fb555
Tidy test
2021-05-13 10:47:26 -04:00
Tadgh
3428d71023
Add toggle. Add test. Add changelog. add docs
2021-05-13 10:29:07 -04:00
Ken Stevens
316e7e0d6d
Ks 20210512 value set expansion id ( #2654 )
...
* tested and fixed
* changelog
2021-05-12 21:38:29 -04:00
James Agnew
b64346ba1e
Add shcheduled task enablement config ( #2652 )
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* Add shcheduled task enablement config
* Add changelog
* Test fix
* Cleanup
2021-05-12 14:38:30 -04:00
Tadgh
d70b1866c1
Remvoe dead space
2021-05-11 10:54:14 -04:00
Tadgh
424ec2118b
Add implementation. Add test. Add changelog
2021-05-11 10:31:29 -04:00
jamesagnew
5c4fcac530
Merge branch 'rel_5_4'
2021-05-11 08:40:09 -04:00
James Agnew
3015438a0c
Avoid query cache poisoning ( #2647 )
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* Avoid query cache poisoning
* Test fixes
* Add changelog
2021-05-11 08:39:38 -04:00
James Agnew
26d030f93e
Add language validation ( #2644 )
...
* Add language validation
* Add tests
* Test fix
2021-05-10 20:09:45 -04:00
James Agnew
43631d4937
Account for NOPs in Auto-Versioned References ( #2643 )
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* Account for NOPs in auto-versioned references
* Add docs
* Add tests
2021-05-08 18:09:50 -04:00
jamesagnew
176be4df16
Merge branch 'master' into rel_5_4
2021-05-07 17:44:47 -04:00
jamesagnew
0cebbf4fa8
Merge branch 'master' of github.com:hapifhir/hapi-fhir
2021-05-07 17:44:27 -04:00
jamesagnew
2068372998
Version bump
2021-05-07 17:43:54 -04:00
jamesagnew
63c4b22cd3
Undo bump
2021-05-07 17:42:50 -04:00
jamesagnew
17e41520a4
Version bump
2021-05-07 17:41:39 -04:00
James Agnew
5a9f499fbf
Resolve weakness in history operation ( #2642 )
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* Address DOS issue in History operation
* Work on history caching
* Add docs
* Add changelog
* Resolve test failures
* Test fixes
* Test fix
* Test fixes
2021-05-07 12:04:59 -04:00
Tadgh
cf864c2078
Merge remote-tracking branch 'origin/master' into issue-2634-increase-src-path-length
2021-05-06 09:10:48 -04:00
Ken Stevens
a4856bba17
fix iBundleProvider.getResources(from,to) throwing a NPE ( #2632 )
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* fix iBundleProvider.getResources(from,to) throwing a NPE
* change log
* review feedback
* rename test to IT that has concurrency failures
2021-05-05 21:50:51 -04:00
Tadgh
d17ee2eb78
Add changelog
2021-05-05 16:01:29 -04:00
KevinIsAProgrammer
75c74a22db
Merge pull request #2619 from hapifhir/2590_preserve_the_ID_value_of_the_resources_in_the_package_loader
...
2590 preserve the id value of the resources in the package loader
2021-05-03 15:39:14 -04:00
Kevin Hartmann
320e8379b3
Now convert pure numeric ids to "npm-<id>".
2021-05-03 12:55:17 -04:00
jamesagnew
82be821628
Credit for #2577
2021-05-03 08:03:49 -04:00
jamesagnew
573097379d
Credit for #2623
2021-05-02 17:20:16 -04:00
James Agnew
0cea403800
Fix vulnerability warning on maven plugin ( #2621 )
...
* Fix vulnerability warning on maven plugin
* Compile fixes
* Fix bootstrap dep
* Test fix
* Fix tests
* FIx deps
2021-05-02 12:14:32 -04:00
James Agnew
970a9884f0
Avoid tag definition constraint ( #2620 )
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* Avoid tag definition constraint failure
* Version bumps
* Add changelog
* Avoid guava issue
* Test fix
* Test fix
* Bump pom
2021-05-01 17:16:15 -04:00
Kai Kewley
55ef6f8653
Add Snowstorm to the points map. ( #2582 )
2021-04-30 19:05:46 -04:00
jamesagnew
12c0bcda47
Credit for #2579
2021-04-30 19:03:47 -04:00
Kevin Hartmann
b3afe41de8
Added test to make sure we have loaded the expected package id.
2021-04-30 15:14:19 -04:00
Tadgh
983d811af6
Merge pull request #2587 from hapifhir/issue-2585-enhance-placeholder-targets-logic
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Issue 2585 enhance placeholder targets logic
2021-04-30 12:55:27 -04:00
Tadgh
42109e8a4a
Add changelog
2021-04-29 18:31:10 -04:00
Nick Goupinets
8cde076f1e
Merge branch 'master' into 2566_update_s13n_and_validation_handling
2021-04-29 17:25:32 -04:00
JP
239d2496ea
CQL hardening and Dstu3 unit tests ( #2450 )
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* WIP for elm caching
* Bug fixes and a working DSTU3 unit test
* More tests, Address review feedback, add initial docs
* Update to cql-evaluator 1.2.0
* Fixes for documentation
2021-04-29 14:52:13 -04:00
Nick Goupinets
d67537231c
Merge branch 'master' into 2566_update_s13n_and_validation_handling
2021-04-29 13:55:48 -04:00
James Agnew
95d7ba6fa8
Streamline Search SQLs ( #2576 )
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* Streamline SQL queries
* SQL query tidying
* Add changelog
* Test fixes
* Tests passing
* Ongoing work
* Test fixes
* Test fixes
* Build fix
* Cleanup
* Fixes
2021-04-28 10:29:09 -04:00
Nick Goupinets
21d8cdfefc
Merge branch 'master' into 2566_update_s13n_and_validation_handling
2021-04-28 10:16:27 -04:00
KevinIsAProgrammer
dd61a8aa2c
Merge pull request #2575 from hapifhir/kh_2526_Add_Operation_Section_to_Conformance_Statements_resource_section
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Kh 2526 add operation section to conformance statements resource section
2021-04-27 22:47:30 -04:00
Tadgh
ac1d4e3e4f
Merge pull request #2542 from hapifhir/issue-2534-new-tx-pointcut
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Add new pointcut for transaction processing completed.
2021-04-27 18:42:19 -04:00
Kevin Hartmann
b9151a4a75
Added Changelog.
2021-04-27 16:34:24 -04:00
Nick Goupinets
024f553fc9
Merge branch 'master' into 2566_update_s13n_and_validation_handling
2021-04-27 09:31:42 -04:00
jamesagnew
00a37deb08
Credit for #2384
2021-04-27 08:43:25 -04:00
Tadgh
798e960bb8
Merge remote-tracking branch 'origin/master' into issue-2534-new-tx-pointcut
2021-04-26 15:26:34 -04:00
Nick Goupinets
9e153ddbcd
Updated docs
2021-04-26 14:26:21 -04:00
Kevin Dougan SmileCDR
0246e7dd0e
2572 - Add master Branch changes related to backport of fix for #2171… ( #2574 )
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* 2572 - Add master Branch changes related to backport of fix for #2171 for new 5.3.3 release.
* 2572 - Added some missing changelog folders for the v5.3.1 and v5.3.2 releases.
* 2572 - Added a missing backport changelog entry for the v5.3.1 release.
* 2572 - Added a missing VersionEnum entry for the V5_3_1 release.
2021-04-26 14:13:42 -04:00
Tadgh
b200c10ced
Merge remote-tracking branch 'origin/master' into issue-2534-new-tx-pointcut
2021-04-26 09:48:30 -04:00
jamesagnew
987264b271
Version bump JENA
2021-04-25 17:38:04 -04:00
James Agnew
2ba1005762
OpenAPI Support ( #2560 )
...
* Start work on OpenAPI
* Fixes
* Work on OpenAPI
* Cleanup
* Cleanup
* More swagger work
* Build fix
* More work
* More work
* Add documentation
* Docs fixes
* Add changelog
* License updates
* Add API
* Cleanup
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_plain/openapi.md
Co-authored-by: patrick-vachon-smilecdr <81274188+patrick-vachon-smilecdr@users.noreply.github.com>
* Work on scripts
* Add docs
* Compile fix
* Work on fixes
* Fix tests
* Test fix
* Test fix
* Build fix
* Tests
* Build fix
* Work on pipeline
* Version bump
* Test fix
* Version bump
* Test fix attempts
* Test fix
* Test fix
* Remove accidentally committed files
* Fixes
* Tets fixes
* Test fix
* Test fix
* Test fix
* Test fixes
* Test fixes
* Test fixes
* License header updates
* test fix
* Test fixes
* Test fix
* Test fixes
* Test fix
* Checkstyle bump
Co-authored-by: patrick-vachon-smilecdr <81274188+patrick-vachon-smilecdr@users.noreply.github.com>
2021-04-25 15:40:50 -04:00