Commit Graph

213 Commits

Author SHA1 Message Date
jamesagnew e6c806283e Merge branch 'ja_20200206_multitenancy' of github.com:jamesagnew/hapi-fhir into ja_20200206_multitenancy 2020-04-20 16:58:59 -04:00
jamesagnew 544d9fbc6c Add migration tasks 2020-04-20 16:58:48 -04:00
jamesagnew bbab016ca6 Rename config 2020-04-20 12:38:04 -04:00
jamesagnew faddeeb779 Add changelog 2020-04-20 11:15:35 -04:00
jamesagnew 95b77af570 Merge branch 'master' into ja_20200206_multitenancy 2020-04-20 11:07:10 -04:00
jamesagnew 7248b4e18e Finish docs 2020-04-20 11:02:27 -04:00
jamesagnew c412339a05 Merge branch 'ja_20200206_multitenancy' of github.com:jamesagnew/hapi-fhir into ja_20200206_multitenancy 2020-04-19 14:41:26 -04:00
jamesagnew d3479cd093 Work on docs 2020-04-19 14:41:18 -04:00
jamesagnew cd3e1c5e72 Tenancy docs 2020-04-19 10:15:51 -04:00
jamesagnew 6c760c9bff DOcs work 2020-04-18 19:14:02 -04:00
jamesagnew c0965b1be8 Work on docs 2020-04-18 18:54:46 -04:00
jamesagnew 2ddeea37c2 Work on multitenancy 2020-04-18 17:27:06 -04:00
James Agnew 42c8cd0e38
Add cascading delete to client (#1804)
* Add cascading delete to client

* Add changelog
2020-04-18 11:16:16 -04:00
jamesagnew bcac2b061c Credit for #1799 2020-04-18 11:14:15 -04:00
jamesagnew 48057b9d8e Merge branch 'master' into ja_20200206_multitenancy 2020-04-17 17:59:48 -04:00
James Agnew 497757501b
Improve search method binding priority (#1802)
* Work on search method binding priority

* Work on method priority

* Work on binding priority

* Test fixes

* Add changelog

* Test fixes

* compile fix

* One more comple fix

* Test cleanup

* Test fix
2020-04-17 09:28:33 -04:00
jamesagnew 25cdbb15c2 Work on multitenancy 2020-04-16 15:33:48 -04:00
jamesagnew d822867a4a Merge branch 'master' into ja_20200206_multitenancy 2020-04-15 22:12:20 -04:00
James Agnew f95f619bdc
Correct two JPA processing bugs (#1801)
* Work on search params on contained

* Add workaround for stored decimals with leading decimal point

* Add changelog

* Cleanup

* Test fix

* Test fix

* One more test fix
2020-04-15 14:22:47 -04:00
jamesagnew 982b54df57 Work on multitenancy 2020-04-13 11:50:49 -04:00
jamesagnew c26a5553e9 Multitenancy work 2020-04-12 20:47:32 -04:00
jamesagnew e55ccf88fc Work on multitenancy 2020-04-10 20:01:59 -04:00
jamesagnew 219332e9e3 Work on multitenancy 2020-04-10 11:11:29 -04:00
James Agnew 1a3a40b3c9
Merge pull request #1796 from jamesagnew/ja_20200409_report_json_error_attr_name
Improve error message reporting for invalid json - Fix #1793
2020-04-09 15:11:57 -04:00
jamesagnew e0fcbe1df2 Merge branch 'master' into ja_20200206_multitenancy 2020-04-09 11:52:27 -04:00
James Agnew fdf6633145
Add validation for currencies to validator (#1797)
* Add validation for currencies to validator

* Add changelog
2020-04-09 11:39:30 -04:00
jamesagnew 2a43aa3b6c Improve error message reporting for invalid json - Fix #1793 2020-04-09 09:53:13 -04:00
James Agnew 8cdc3a72ce
Fix #1794 - Client ID and Server ID mode clash (#1795)
* Fix #1794 - Client ID and Server ID mode clash

* Try to track down intermittent test failure
2020-04-09 09:31:13 -04:00
jamesagnew 0e44786320 Add changelog 2020-04-08 18:07:36 -04:00
jamesagnew b78205c218 Ongoing cleanup 2020-04-06 17:00:45 -04:00
jamesagnew 6baf1995c9 Work on subscription cleanup 2020-04-02 20:30:19 -04:00
jamesagnew 08c1c28f67 Credit for #1786 2020-03-31 20:08:25 -04:00
jamesagnew 9d09466c21 Add debug logging to CLI 2020-03-31 10:49:16 -04:00
James Agnew fe48313100
Add response size capturing interceptor (#1776)
* Work on capturing repsonse sizes

* Interceptor complete

* Add changelog

* Test fix
2020-03-30 11:24:10 -04:00
jamesagnew 62d867902f Work on multitenancy 2020-03-29 18:16:04 -04:00
jamesagnew 691f2c4e9a Work on muiltitenancy 2020-03-29 13:35:20 -04:00
jamesagnew 9df4c58122 Work on multitenancy 2020-03-27 09:22:00 -04:00
jamesagnew ec6fe70acb Merge branch 'master' into ja_20200206_multitenancy 2020-03-27 05:50:08 -04:00
James Agnew b794618e9d
Avoid a crash encoding contained bundle (#1778)
* Avoid a crash encoding contained bundle

* Add changelog

* Apply same fix to XML

* Fix typo
2020-03-25 21:20:10 -04:00
jamesagnew 4b5165b5e2 Docs fix 2020-03-24 20:10:14 -04:00
James Agnew eaaddaf7ca
Fix #1763 - Include bundle type in summary=count responses (#1773)
* Fix #1763 - Include bundle type in summary=count responses

* Test fix
2020-03-24 16:24:41 -04:00
James Agnew c6d23a8bc6
Add chain on _type parameter (#1772)
* Add chain on _type parameter

* Add changelog

* Test fix

* Address review comments

* Fix azure yaml

* Correct HTTPs in pom

* One more pom tweak

* Test fix

* Try azure again
2020-03-24 09:44:57 -04:00
jamesagnew 13f0e5384b Address review comments 2020-03-24 06:02:55 -04:00
jamesagnew fa29f3e8ab Credit for #1770 2020-03-23 19:12:05 -04:00
jamesagnew 7706600a8c Add changelog 2020-03-23 18:05:48 -04:00
jamesagnew 14316147c5 Resolve some docs issues 2020-03-23 10:34:12 -04:00
James Agnew c2ae5a8326
Add FHIRPath evaluation interceptor (#1769)
* Add FHIRPath evaluation interceptor

* Add changelog
2020-03-22 12:57:24 -04:00
Jafer Khan b8b8248133 Merge branch 'master' of https://github.com/jaferkhan/hapi-fhir into cleanup-docs-v2
# Conflicts:
#	hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/validation/profile_validator.md
2020-03-22 02:25:11 +05:00
Tadgh ad46c3173a Add missed attribution to changelog 2020-03-18 10:26:33 -07:00
Tadgh 3eb09b15f0 Merge branch 'master' into bugfix/1752-support-chained-parameters-inside-reverse-chained-parameter 2020-03-17 10:32:43 -07:00
James Agnew 22413911bf
Validation api changes (#1719)
* Validation enhancements

* Work on validation api reworking

* Keep working on validation API

* Keep working on new term API

* Work on validation api

* Ongoing work on validation

* Work on integrating validation

* Work on validation API

* Add to validation API

* Work on validation

* Work on API

* Work on validation

* Work on validation API

* Work on validation API

* Work on validation api

* Work on validation API

* Work on validation api

* Validation API changes

* Work on API

* More work on validationo API

* Work on validation API

* FIxes

* WOrk on validation api

* Work on validation API

* Tests passing!

* More cleanup

* More validation API changes

* Fix intermittent test failure

* Package reorg

* Validation API work

* Work on doocumentation

* Work on API

* More work on new validation API

* Fix errorprone-reported error

* Test fixes

* Documentation updates

* Documentation tweaks

* Work on API

* Bean name adjustments

* Build fixes

* Some test fixes
2020-03-17 13:28:59 -04:00
Tadgh 77733b59fa Add changelog 2020-03-17 09:33:58 -07:00
James Agnew 288abe4504
Improve efficiency in search deleting (#1759)
* Improve efficiency in search deleting

* Changelog

* Address review comments
2020-03-17 12:33:38 -04:00
James Agnew 5867d62d62
Avoid duplicate predicate in _id queries (#1761)
* Avoid duplicate predicate in _id queries

* Add changelog

* Change to trigger CI

* Address review comments
2020-03-17 11:12:58 -04:00
James Agnew 1dc5d89013
Optmize forced ID resolution (#1754)
* Add forced ID caching

* Work on id optimization

* Test fixes

* More optimization work

* Add some docs

* Work on docs

* Test fixes

* Test fixes

* Test fixes

* Address review comments

* Compile fix
2020-03-12 17:12:50 -04:00
tungdt 46c67d20cc Add VEIG(Vietnam Ehealth Innovation Group) to points.json 2020-03-06 17:43:56 +07:00
Tadgh 828ddd5185 Update docs 2020-03-04 12:14:55 -08:00
James Agnew 58ee76549c Merge branch 'master' into ja_20200206_multitenancy 2020-03-04 08:19:22 -05:00
Ken Stevens 5b5ef08500 Merge remote-tracking branch 'remotes/origin/master' into ks-20200302-near-chain 2020-03-03 09:44:52 -05:00
James Agnew 4a160a2df3 Merge branch 'master' into ja_20200206_multitenancy 2020-03-03 09:25:19 -05:00
James Agnew 58b5bd9664
Limit type on _has query (#1743)
* Limit type on _has query

* Add changelog
2020-03-03 08:28:38 -05:00
James Agnew 3c2c1dab2e
Error on missing profile validation (#1742)
* Error on missing profile validation

* Add changelog

* Test fixes
2020-03-03 08:28:26 -05:00
Ken Stevens bce1716c6c documentation 2020-03-02 22:13:21 -05:00
James Agnew 8c78e465b1
Defer large term delta adds (#1736)
* Defer large term delta adds

* Add changelog
2020-02-28 14:41:15 -05:00
James Agnew 5bc554949b
Remove deleted resources from cached search results (#1732)
* Remove deleted resources from cached search results

* Add changelog

* Add tests
2020-02-28 10:57:26 -05:00
James Agnew cb9906580e
Index canonical references (#1728)
* Index canonical references

* Add changelog

* Fix compile error

* Add whitespace
2020-02-25 21:45:46 -05:00
Gary Graham df9e86ec66 Merge branch 'master' into date-match-bug 2020-02-25 17:26:53 -05:00
James Agnew b2b0ff22b4
Collapse date joins (#1726)
* Collapse date joins

* Add changelog

* Address review comments

* Add whitespace

* fix test

Co-authored-by: Ken Stevens <ken.stevens@sympatico.ca>
2020-02-25 17:17:13 -05:00
Gary Graham 97c98254d0 Extract Common functionality out of CalculateHashesTask, build CalculateOrdinalDatesTask based on it 2020-02-25 16:09:08 -05:00
Gary Graham 512af5b87d Add changelog entry 2020-02-25 14:09:51 -05:00
James Agnew a05c4ce9eb
Don't thrash delta links (#1721)
* Don't thrash delta links

* Add changelog

* Remove commented out code
2020-02-19 17:46:54 -05:00
James Agnew ab8dfa5a03
Avoid multi-term for ElasticSearch (#1717)
* Avoid multi-term for ElasticSearch

* Add changelog

* Remove redundant code
2020-02-18 16:40:44 -05:00
IanMMarshall fba28950ec
Merge pull request #1693 from jamesagnew/im_20200131_remove_circular_dependency_forcedid
Changes to schema to loosen dependencies involving Forced ID table
2020-02-18 14:16:09 -05:00
James Agnew 64f07e4dc0
Includes performance enhancement (#1702)
* Includes performance enhancement

* Add changelog

* Test fix

* Fix typo

* A few coverage cleanups

* Test fix

* Fix changelog
2020-02-18 14:11:48 -05:00
ianmarshall 2f4f62b32e Add change log for Resource and Resource History table changes. 2020-02-18 14:09:59 -05:00
James Agnew 60f16dd91d
Update to 4.3.x core JAR (#1715)
* Added optionality for adding resource fetcher

* Added coverage that proves invocations

* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences

* Added optionality for adding resource fetcher

* Added coverage that proves invocations

* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences

* Start working on converter

* Account for compile errors

* Test fix

* Work no validator

* Work on getting core working

* Add some test coverage

* Many test fixes

Co-authored-by: Jens Kristian Villadsen <46567685+jvitrifork@users.noreply.github.com>
2020-02-17 14:28:29 -05:00
jamesagnew ddc7b601ee Version bump to 4.3.0-SNAPSHOT 2020-02-16 19:23:22 -05:00
jamesagnew 4fd80cfca7 Bump to 4.2.0 2020-02-16 19:00:15 -05:00
jamesagnew f7ec41ffc5 Work on multitenancy 2020-02-09 08:40:15 -05:00
James Agnew b2d2346228 Work on multitenancy 2020-02-07 15:18:06 -05:00
James Agnew 97289b3a1f Credit for #1692 2020-02-04 17:38:42 -05:00
jamesagnew afd6a2b3a7 Remove entry from atlas 2020-02-01 17:31:57 -05:00
Ken Stevens 2545fc6e3d Merge remote-tracking branch 'remotes/origin/master' into ks-20200120-near-search
# Conflicts:
#	hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/4_2_0/changes.yaml
2020-01-29 17:06:02 -05:00
jamesagnew beab5b3a9c Credit for #1689 2020-01-29 05:56:36 -05:00
dionmcm 95254406bc updated custom narrative generation documentation
I found that the documented pattern of
 [name].class=[fully qualified classname]
No longer works. The pattern of
 [name].resourceType=[ResourceType]
worked for me, I updated the datatype example as well in kind, but I've not used it that way.

Maybe some extended examples for the other property type extensions would be good - e.g. .profile, .style, .contextPath, .narrative, .title
2020-01-29 05:53:45 -05:00
James Agnew 471073103f Further reduce memory usage in the terminology delta operations 2020-01-28 14:36:15 -05:00
Ken Stevens cef58b528e added _filter to list of search gaps 2020-01-25 18:46:58 -05:00
Ken Stevens eff4b294df Merge remote-tracking branch 'remotes/origin/master' into ks-20200120-near-search
# Conflicts:
#	hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/4_2_0/changes.yaml
2020-01-25 18:40:55 -05:00
James Agnew ba0048aade
Resolve memory leak (#1685)
* Work on memory leak

* Work on term delta uploading

* Resolve memoery leak in terminology service

* Fix cache key
2020-01-25 17:48:26 -05:00
Ken Stevens a63c62b2e1 ensure in-memory matching location search for Dstu3 falls back to a db search 2020-01-25 14:35:20 -05:00
Ken Stevens 78ab01f00b Change log and check in-memory search for location 2020-01-24 21:56:14 -05:00
James Agnew dd01688a90 Credit for #1679 2020-01-24 08:32:19 -05:00
James Agnew 39ff698dd2
Parser performance tweaks (#1660)
* Parser improvements

* Parser tweaks

* Fix test

* Add changelog

* Bump spring mvc version

* Bump spring version

* Test fix?
2020-01-22 14:44:12 -05:00
James Agnew 0718f6b52a
Allow schemalocation in XML validation (#1677)
* Allow schemaLocation declaration in XML when validating

* Add fix for #1676
2020-01-21 07:14:16 +09:00
James Agnew c0e929dacb
Copy identifiers to placeholder resources (#1675)
* Copy identifiers to placeholder resources

* Add tests

* Maven cleanup

* Still messing around with azure

* Adding to logging

* More azure work

* One more attempt

* More messing around with azure

* Test fix

* Another caching attempt

* More work on azure pipeline

* Fix pipeline file

* Keep working on pipeline

* More work on azure

* More azure

* More azure work

* More azure
2020-01-21 06:09:06 +09:00
James Agnew aad5a30a3d
Support count=0 (#1670)
* Support count=0

* Fix LGTM issue
2020-01-15 14:52:32 +08:00
James Agnew 201ec34db4
Fix expunge issue when no tags present (#1671)
* Fix expunge issue when no tags present

* Add changelog

* Try to clean up POMs that are failing CI

* Rework dependencies

* Roll back change that did not work
2020-01-15 14:47:22 +08:00
James Agnew 1390ea3c06
Update FHIR R5 structures to 4.2.0 version (#1665)
* Work on upgrading core

* Work on R5 updates

* Work on core updates

* Test fix

* Update model version properties file for R5

* Bump core version

* Test fixes

* Add 4.2.0-SNAPSHOT version to versions page in docs
2020-01-14 10:27:01 +08:00
James Agnew 62b50f06ad Documentation fix 2020-01-14 04:44:10 +08:00
James Agnew 114e8f5f15 Credit for #1655 2020-01-13 13:39:47 +08:00