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5045 Commits

Author SHA1 Message Date
James Agnew 2a6436af23 Rename columns in code mapping 2019-07-05 09:03:03 -04:00
jamesagnew aff88d3ebb License header updates 2019-07-05 07:27:18 -04:00
Ken Stevens 5b58cbec76
Apply the same fix we used for Dstu3 (#1367) 2019-07-04 17:16:39 -04:00
James Agnew 6e20b53979 Fix a crash in R4 validation 2019-07-04 16:27:04 -04:00
Ken Stevens 2b1ed16f68 Apply the same fix we used for Dstu3 2019-07-04 13:58:20 -04:00
James Agnew eacee1516b Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-07-04 09:54:45 -04:00
James Agnew 4f7d4aa8d2 Two test fixes 2019-07-04 09:54:26 -04:00
jamesagnew e762ac9d10 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-07-04 09:01:35 -04:00
jamesagnew b3cb533ada Store details in RequestDetails 2019-07-04 09:01:17 -04:00
James Agnew 886f3f442b Moving testloggingutil into test utilities 2019-07-04 09:00:30 -04:00
James Agnew f1848fb1ad Include version ID in response for deleted resource 2019-07-03 14:44:12 -04:00
James Agnew 5e44161c9d Add explicit JAR plugin version 2019-07-03 14:08:01 -04:00
James Agnew 60e2063e9a Defend against ConcurrentModificationException in PointcutLatch test 
util
 2019-07-03 09:11:55 -04:00
James Agnew 56aaef641c Add request ID 2019-07-02 21:32:28 -04:00
James Agnew 1faf7785c4 Dont filter constraints from the event broadcast - this was not needed 
after all
 2019-07-02 09:21:15 -04:00
jamesagnew 7b7136e3ab Ensure test coverage of JPA entities 2019-07-02 08:37:48 -04:00
jamesagnew 491776a7b8 Fixes to cascading delete 2019-07-02 05:41:38 -04:00
jamesagnew f20af05897 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-07-01 10:49:57 -04:00
jamesagnew 742389642d Add tests for delete conflicts and authorizationinterceptor 2019-07-01 10:49:38 -04:00
James Agnew af7de15b0f Add cascading deletes to CLI 2019-06-30 13:04:26 -04:00
jamesagnew 5c0e54fb86 Improve processing of deletes in AuthorizationInterceptor 2019-06-29 14:40:51 -04:00
jamesagnew ccf491b3ae Add parent pom to BOM 2019-06-29 13:50:43 -04:00
James Agnew 1fd99dac63
Enable optional cascading deletes on JPA server (#1363) 
* Start working on cascading deleets

* WOrk on cascading deletes

* Work on cascading deletes

* Enable cascading deletes

* Cascade deletes almost working

* FIx test

* Test fix
 2019-06-28 17:32:39 -04:00
James Agnew fa80223d57 Fix invalid xml 2019-06-28 15:25:11 -04:00
James Agnew 8acaafed36 Credit for #1354 2019-06-28 15:24:43 -04:00
Stig Rohde Døssing d25e882d9a Issue-1351: Add a BOM POM for HAPI FHIR 2019-06-28 15:18:06 -04:00
James Agnew 05d004803f Credit for #1330 2019-06-28 15:15:51 -04:00
Joel Schneider 5c55133275 quick hack to pass unit test (handle files located in subdirectories of zipfile) 2019-06-28 15:11:16 -04:00
Joel Schneider 557c9b66c2 add TerminologyLoaderSvcImgthlaTest 2019-06-28 15:11:16 -04:00
Joel Schneider 5d113c2e8b Remove allele_id property. (If needed, a CodeSystem supplement could define it. Defining a separate allele_id CodeSystem, and related ConceptMap, may also be a reasonable option.) Trying to keep the list of concept properties as straightforward as possible for now. 2019-06-28 15:11:16 -04:00
Joel Schneider 1f5cbc36b3 add stub for HLA nomenclature terminology upload 2019-06-28 15:11:16 -04:00
jamesagnew 6d8465abe6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-06-27 18:23:54 -04:00
jamesagnew 5910131319 License header updates 2019-06-27 18:23:45 -04:00
James Agnew 53b47ed580 Ensure that parsed reesource is available to interceptors 2019-06-27 18:23:10 -04:00
James Agnew 10d969c514
Add Consent Service (#1359) 
* Initial consent svc

* Ongoing consent svc work

* Add docs

* Ongoing consent service work

* Work on consent service

* More work on consent svc

* License header updates

* Ongoing consent svc work

* Some test fixes

* Some test fixes

* More work on consent svc

* Tests working

* Test fix

* Propagate RequestDetails to everything in JPA server

* More interceptor tweaks

* Fix compile error

* One more tweak to captured SQL

* Ongoing interceptor tweaks

* Ongoing interceptor tweaks

* More interceptor tweaks

* Interceptor tweaks

* Tweaks to tests

* Fix tests

* Test fix

* Raise warnings when encoding extensions with missing values

* Consent service work

* More interceptor tweaks

* Consent interceptor tweaks

* Add logging to test
 2019-06-27 16:35:29 -04:00
James Agnew 2bfbea4e6b Remove duplicate test class 2019-06-26 09:24:36 -04:00
James Agnew ce0c84db03
JPA server can't use OR list on _tag:not (#1362) 
* Add a failing test for :not tags

* Add changelog and fix issue
 2019-06-26 08:44:56 -04:00
James Agnew c14f5c1520 Credit for #1361 2019-06-25 18:31:25 -04:00
Gary Teichrow 5509e5c1df Tweaked a couple POM files for 2 sub-projects to stop the IDE from complaining on the builds. After these changes, the build went flawlessly. 
The first change to hapi-fhir-testpage-overlay/pom.xml was to remove a redundant dependency to javax.annotation.
The second change to hapi-fhir-test-utilities/pom.xml was to add a <relativePath> tag to the <parent> tag so that the project could build.
 2019-06-25 18:28:23 -04:00
jamesagnew e76b1dacb3 License header updates 2019-06-22 18:31:16 -04:00
jamesagnew 8bb010bb18 Test fixes 2019-06-22 17:42:02 -04:00
jamesagnew 3ba194acbe Reject subscriptions in JPA server if status field is not set 2019-06-22 17:03:22 -04:00
jamesagnew 0fbde2a4e5 Fix #1352 - Don't fail to create observation with a value type of 
SampledData
 2019-06-22 16:43:25 -04:00
jamesagnew 3274693576 FIx a test 2019-06-22 16:31:55 -04:00
jamesagnew 95876ec3cb Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-06-22 16:24:07 -04:00
jamesagnew 638cb976fd Fix #1250 - Don't include Bundle.entry.response on search results 2019-06-22 16:23:32 -04:00
James Agnew 4ad1808da3
Propagate RequestDetails to everything in JPA server (#1358) 2019-06-22 15:18:06 -05:00
jamesagnew 58e6b7f6aa Fix #1011 - Was resolved in #1355 2019-06-22 16:03:35 -04:00
jamesagnew 989e26fdb4 Fix #1355 - Failed to call access method: java.lang.NullPointerException in case of bundle entry without resource 2019-06-22 15:51:56 -04:00
James Agnew 2543f27697 Add a test 2019-06-21 15:38:16 -04:00