e9811c6377
One more trim
2019-12-18 17:50:30 -05:00
f2b7846973
Trim subrequest
2019-12-18 17:21:47 -05:00
d277d3fed5
Docs updates
2019-12-10 16:10:09 -05:00
976740955c
Make constructor of 'Verdict' public. Fixes gh-1621
2019-12-07 18:08:45 +05:00
f58fba6f04
Some test cleanup ( #1616 )
...
* Some test cleanup
* Add test
* More test logging
* More docs cleanup
* Add test logging
2019-12-02 11:00:18 -05:00
5f803f7e68
Documentation updates
2019-11-26 02:00:22 -03:00
51b608188b
Some CI surefire improvements ( #1602 )
...
* Some CI surefire improvements
* Build tweak
* More tweak
* Update azure-pipelines.yml for Azure Pipelines
* Update azure-pipelines.yml for Azure Pipelines
* One more CI attempt
* Update azure-pipelines.yml for Azure Pipelines
* Tweak command line
* Another build test fixc
* More build cleanup
2019-11-23 19:51:02 +01:00
a2f77b23d2
Fix #1583 - Index local refs in canonical types ( #1593 )
...
* Fix #1583 - Index local refs in canonical types
* Add fix to pre-expansion
* Test fix
* Rework ID handling
* Test fixes
* Fix test
2019-11-23 16:32:37 +01:00
497a96ae68
Version bump for next round of development
2019-11-12 22:09:21 -05:00
f99ad981b5
Version bump to 4.1.0
2019-11-12 16:08:20 -05:00
89b25ce828
License updates
2019-11-02 17:34:05 -04:00
80bfb9af37
Issue-1077: Make CapabilityStatementProvider use the closest common superclass of provided resources when generating rest.resource.profile, instead of always using the base definition.
2019-11-01 10:20:16 -04:00
9d4df3e470
Add a test
2019-10-30 05:40:32 -04:00
ffb15682de
Update license headers
2019-10-26 14:48:08 -04:00
2b3c775b77
Some cleanup and fix a test
2019-10-26 12:45:57 -04:00
9cc945b5bd
Merge branch 'osgi-server-work' of https://github.com/bdenton/hapi-fhir into bdenton-osgi-server-work
2019-10-25 17:05:09 -04:00
74c03b5bb7
Add a test
2019-10-24 08:32:52 -04:00
91ec0a6922
Test fix
2019-10-24 08:32:52 -04:00
385a885abf
Add ability for resource source to be specified by header
2019-10-24 08:32:52 -04:00
306b02e147
Additional tracing statements.
2019-10-22 20:41:52 -04:00
9e44049847
Allow for improved overriding of RestfulServer#newRequestDetails
2019-10-22 18:09:21 -04:00
9b94e4e26d
Allow uploading term deltas using CS resource ( #1555 )
...
* Work on accepting codesystem reources for delta operations
* Ongoing work on term uploader
* Restore the ability to use CodeSystem resources for the delta
* Add tests
* Fix NPE
* Test fixes
2019-10-22 17:11:39 -04:00
73961072a6
Handle invalid chains on custom search params ( #1553 )
...
* Handle invalid chains on custom search params
* Add some more tests
* One more test fix
2019-10-21 21:21:33 -04:00
5dcbed0438
Fix foreign key handling when dropping tables
2019-10-17 15:52:35 -04:00
9a050461a8
Make cache timeout configurable
2019-10-15 09:34:48 -04:00
82a6221e5b
Provided unit test for cache controlled metadata
2019-10-15 07:58:20 -05:00
6a2242656f
Added evaluation of Cache-Control HTTP header
2019-10-15 07:58:20 -05:00
2725797610
Implement Terminology Delta Operations ( #1536 )
...
* Start refactoring terminology delta operations
* Work on delta operations
* Work on concept saving
* Split term services into smaller services
* Work on term delta operations
* Work on term svcs
* Work on term operations
* More work on delta uploader
* Add a test
* Wrk on term service
* Fix compile error
* Some refactoring
* Test fix
* Test fix
* Test fixes
* Test fix
* Test fixes
* Test fixes
* Work on delta
* Work on tests#
* Test fixes
* Improve resequencing logic
* Build test
* More testing
* More build testing
* More work on tests
* CHange test logging
* Fix term service PID issue
* Update src/changes/changes.xml
Co-Authored-By: Diederik Muylwyk <diederik.muylwyk@gmail.com>
* Address review comment
* Some cleanup
* Test fix
* Fix some tests
* Test fixes
2019-10-14 19:14:41 -04:00
f81aaa7f00
refactor "split" packages; create osgi bundle for server framework
2019-10-12 14:08:41 -07:00
92c6b88964
Add test
2019-10-10 07:16:18 -04:00
e656863a73
Correct bugs reported by LGTM ( #1533 )
...
* Correct bugs reported by LGTM
* Add some tests
* A few more updates
* YAML update
* Test fixes
* One more test fix
* Test fix
2019-10-09 19:26:57 -05:00
861ed36f00
Allow patches to be authorized for DSTU3 transactions ( #1529 )
...
* Allow patches to be authorized for DSTU3 transactions
* Add changelog
2019-10-08 14:29:27 -05:00
3c4c6f7925
Don't allow Content-Location header to dictate version for updates
2019-10-04 09:55:14 -04:00
150c865f68
License header updates
2019-10-03 21:20:08 -04:00
94b8d6f84d
FIXME
2019-10-03 12:17:37 -04:00
d1deedf247
pre-review cleanup
2019-10-03 12:14:11 -04:00
566443d0fe
move BundleUtil back
2019-10-03 12:05:26 -04:00
98c76a4d49
Test passes
2019-10-03 12:03:38 -04:00
29e7cdc476
Added ability to modify URLs in BundleUtil
2019-10-03 09:46:32 -04:00
8e9b7b590c
[(servermethodbinding)] Fix method binding to handle special search names(_id:[modifier], _language:[modifier])
2019-10-02 05:51:15 -04:00
066c9a7fb7
Improvements to AutohrizationInterceptor create handling
2019-09-30 15:07:23 -04:00
5509478566
License header update
2019-09-30 10:13:09 -04:00
557a8ccc66
Add top level support for ElasticSearch ( #1514 )
...
* ElasticSearch work
* Add ElasticSearch properties builder
* Clean up POM
* Remove redundant project
* Try to troubleshoot embedded elasticsearch
* Another test attempt
* Add credentials to elasticsearch config
* Work on lastn
* Address review comments
* A couple of test fixes
2019-09-30 09:30:39 -04:00
8657afb01e
Fix intermittent test failures regarding search ( #1509 )
...
* Add some logging
* Add more test logging
* Work on some test logging
* Fix compile error
* Work on codecov
* Work on codecov
* Remove test debug messages
2019-09-25 20:15:21 -04:00
57377f5557
Fix #1483 - Don't let RP methods handle a request with includes if the
...
method doesn't understand them
2019-09-25 10:54:37 -04:00
0b630f6851
Merge branch 'searchmethodbinding_test' of https://github.com/tuomoa/hapi-fhir into tuomoa-searchmethodbinding_test
2019-09-25 09:01:38 -04:00
a989a746b0
Fix #1494 - Upgrade to new :recurse syntax for R4 include/revinclude
...
statements
2019-09-20 09:38:29 -04:00
6e98c02862
Fix #1495 - Avoid NPE in RuleBuilder
2019-09-20 08:57:01 -04:00
eddb98084d
Move PreferReturnEnum back to original location to avoid regressions
2019-09-19 15:48:58 -04:00
4a751cbfc5
Integrate Bulk Export ( #1487 )
...
* Start working on subscription processor
* Work on new scheduler
* Test fixes
* Scheduler refactoring
* Fix test failure
* One more test fix
* Updates to scheduler
* More scheduler work
* Tests now all passing
* Ongoing work on export
* Ongoing scheduler work
* Ongoing testing
* Work on export task
* Sync master
* Ongoing work
* Bump xml patch version
* Work on provider
* Work on bulk
* Work on export scheduler
* More test fies
* More test fixes
* Compile fix
* Reduce logging
* Improve logging
* Reuse bulk export jobs
* Export provider
* Improve logging in bulk export
* Work on bulk export service
* One more bugfix
* Ongoing work on Bulk Data
* Add changelog
2019-09-17 16:01:35 -04:00
2c3283fd34
Add test for search method binding matching
2019-09-12 13:36:56 +03:00
0843a2b02d
Avoid leaking details when canSeeReource rejects a resource from consent
...
service
2019-09-10 11:14:44 -04:00
7e41951508
Create utility method for accessing the reqyest detail
2019-09-09 15:02:12 -04:00
7d162c50db
Don't guess content type for create/put
2019-09-05 14:47:04 -04:00
9428430822
Add support for Resource.meta.source ( #1438 )
...
* Work on indexing source
* Work on tests
* Refactor query count tests
* Unit test fixes
* Add some tests
* DAO fix
* Fix compile error
* Unit test fix
* Cleanup
* Test fix
* Fix compile error
* One more test fix
2019-08-21 11:17:43 -04:00
afb682dfe9
Handle AuthorizationInterceptor rejection of by-type reads on the wrong type earlier in the process
2019-08-15 09:16:45 -04:00
e1b43d811f
Version bump to 4.1.0-SNAPSHOT
2019-08-14 14:06:06 -04:00
3f22456b0f
Bump version to 4.0.0
2019-08-14 11:06:26 -04:00
b127867ef7
Fix responsehighlighterinterceptor to work with graphql
2019-08-13 18:00:30 -04:00
94c498a744
A but more tweaking to the graphql interceptor
2019-08-13 16:05:33 -04:00
01a6aa8f5b
Test fix
2019-08-13 14:54:35 -04:00
b4fece0ae9
Add interceptor hook for graphql calls
2019-08-13 14:46:50 -04:00
bb20c2134b
Issue-1387: Read version from resource meta when deciding whether to return 304 on read
2019-08-13 05:28:03 -04:00
0c9e5ec1ea
Support GraphQL for R3/4/5 ( #1424 )
...
* Work on grpahql enhanbcements
* Add some more chars to the sanitizer function
* Add changelog
2019-08-12 08:24:32 -04:00
dd0cb10dbb
validate operation ignores parameter profile ( #1417 )
...
* This should be working now - need to check tests
* Add a changelog and some docs
* One more test fix
* Tests should be passing
* Fix compile
* Test fixes
* Ignore outdated DSTU2 validation test
2019-08-07 15:31:59 -04:00
a4ca5374ec
Add terminology delta operations ( #1401 )
...
* Start work on delta operations
* Add changelog
* Some build fixes
* Move upload terminology command to CodeSystem resource
* Updates
* Some test fixes
* Add changelog
* Some test fixes
* More test fixes
* Test fix
* Add additional tests
* Transaction boundary fixes
2019-07-29 17:46:42 -04:00
8158292665
Allow operations to better work across multiple versions of FHIR
2019-07-26 05:46:37 -04:00
5bf4fa22e7
Allow patching in tranactions
2019-07-18 16:41:07 -04:00
87ab796309
Updates to validating interceptor
2019-07-18 12:57:30 -04:00
9fc10242b7
Convert validating intercwptors to use new framework
2019-07-18 08:25:35 -04:00
55c0d5b604
Add binary storage for Attachments ( #1386 )
...
* Have this working now
* Add utility method
* Build fixes
* Add changelog
2019-07-17 18:31:17 -04:00
0fb8db11a2
Add new pointcut: PROCESSING_COMPLETED
2019-07-09 14:32:11 -04:00
9e7cabd464
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-07-07 14:59:57 -04:00
44a97f3621
Still fire appropriate interceptor methods if the cached
...
capabiliotystatement is being returned
2019-07-07 14:59:26 -04:00
9fcbdb0cdc
License header updates
2019-07-07 14:41:57 -04:00
73daec633f
Test fix
2019-07-07 13:07:27 -04:00
34f7d4ddbd
Refactor ServerConformanceProvider so that it no longer keeps any state
2019-07-07 12:57:31 -04:00
24536941c2
Test the new isEmpty() method on IBundleProvider
2019-07-05 17:15:02 -04:00
1c7c83cd8e
Add an isEmpty() method to IBundleProvider
2019-07-05 16:16:39 -04:00
dff2fdd3cf
GET RID OF TRAILING LICENSE HEADER SPACES ONCE AND FOR ALL
...
YESSSSSSSSSSSSS
2019-07-05 11:19:51 -04:00
e762ac9d10
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-07-04 09:01:35 -04:00
b3cb533ada
Store details in RequestDetails
2019-07-04 09:01:17 -04:00
f1848fb1ad
Include version ID in response for deleted resource
2019-07-03 14:44:12 -04:00
56aaef641c
Add request ID
2019-07-02 21:32:28 -04:00
742389642d
Add tests for delete conflicts and authorizationinterceptor
2019-07-01 10:49:38 -04:00
5c0e54fb86
Improve processing of deletes in AuthorizationInterceptor
2019-06-29 14:40:51 -04:00
ccf491b3ae
Add parent pom to BOM
2019-06-29 13:50:43 -04:00
1fd99dac63
Enable optional cascading deletes on JPA server ( #1363 )
...
* Start working on cascading deleets
* WOrk on cascading deletes
* Work on cascading deletes
* Enable cascading deletes
* Cascade deletes almost working
* FIx test
* Test fix
2019-06-28 17:32:39 -04:00
6d8465abe6
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-06-27 18:23:54 -04:00
5910131319
License header updates
2019-06-27 18:23:45 -04:00
53b47ed580
Ensure that parsed reesource is available to interceptors
2019-06-27 18:23:10 -04:00
10d969c514
Add Consent Service ( #1359 )
...
* Initial consent svc
* Ongoing consent svc work
* Add docs
* Ongoing consent service work
* Work on consent service
* More work on consent svc
* License header updates
* Ongoing consent svc work
* Some test fixes
* Some test fixes
* More work on consent svc
* Tests working
* Test fix
* Propagate RequestDetails to everything in JPA server
* More interceptor tweaks
* Fix compile error
* One more tweak to captured SQL
* Ongoing interceptor tweaks
* Ongoing interceptor tweaks
* More interceptor tweaks
* Interceptor tweaks
* Tweaks to tests
* Fix tests
* Test fix
* Raise warnings when encoding extensions with missing values
* Consent service work
* More interceptor tweaks
* Consent interceptor tweaks
* Add logging to test
2019-06-27 16:35:29 -04:00
e76b1dacb3
License header updates
2019-06-22 18:31:16 -04:00
4ad1808da3
Propagate RequestDetails to everything in JPA server ( #1358 )
2019-06-22 15:18:06 -05:00
2543f27697
Add a test
2019-06-21 15:38:16 -04:00
c7798fee48
Test fix
2019-06-18 05:40:00 -04:00
6724fd0348
Implement the $subsumes operation ( #1344 )
...
* Implement the $subsumes operation
* Fix #976
2019-06-17 17:31:24 -04:00
b2e99cf035
Add support for conditional patch ( #1348 )
...
* Add support for conditional patch
* Add changelog
* Test fix
2019-06-17 16:12:05 -04:00
2bf680509b
DeleteConflict hook, SearchableHashMapResourceProvider, and in-memory searching ( #1341 )
...
* Make IBundle list interface more flexible
* Make matchResourceLinks visible
* Make matchResourceLinks visible
* Pull in-memory matching functionality out of subscription module into dedicated classes in searchparam module
* Added more accessors to version independent resource classes
* improved forcedid matching (needs to be verified by James)
filter out nulls from HashMapProvider.searchAll() (hopefully no tests depend on this)
* add AnyComposition
* cleanup of Any classes
* create searchparam config so people can use that module without using subscriptions
* create searchparam config so people can use that module without using subscriptions
* fix broken test
* added derivedFrom
* renamed daoRegistry.getResourceDaoIfExists to getResourceDaoOrNull
also added method to add a new dao to the registry and retrieve registered types
* TokenParam.equals
* add error check to searchable hashmap resource provider
* added support for R4
* add successor to measure
* delete conflict hook
start with failing test
* test passes.
hook is called.
* added delete conflict hook
all delete conflict tests pass
* added javadoc
* Performance test
* test bad interceptor case
* typo
* rename criteria matcher
* added support for multiple topics
* fix method name
* add effective period
* Temporarily excluding StressTest from build to try to get Travis under time limit
* change log
* review feedback
* review feedback
* review feedback
2019-06-13 13:59:51 -04:00
5752a6e2b3
reported issue with proposed fix that breaks tests ( #1243 )
...
* reported issue with proposed fix that breaks tests
* Fix spelling
* Merge my changes into this
* Correctly check referential integrity on deletes
* Add one more test
2019-06-04 20:40:20 -04:00
50a8c66bf5
Version bump to 4.0.0-SNAPSHOT
2019-05-30 17:13:03 -04:00
73aa53be8f
Release 3.8.0
2019-05-30 16:50:04 -04:00
86aa71d570
Merge branch 'master' into deprecated
2019-05-29 21:42:02 -04:00
66a669949d
Add docs - Fix #1309
2019-05-29 21:16:33 -04:00
cb8634f26f
Ja interceptor callback fix ( #1308 )
...
* Interceptor callback fix
* Ensure that interceptor methods are called after a transaction
2019-05-14 18:47:11 -04:00
2e50bf6bb0
Un-deprecate a method that should not have been deprecated
2019-05-04 09:49:18 -04:00
f3f5c570b1
A couple of compile glitches
2019-04-24 21:35:49 -04:00
5a9fa4e549
Interceptor tweaks
2019-04-24 21:19:47 -04:00
738c2c1797
Interceptor framework refactoring ( #1287 )
...
Interceptor framework overhaul
2019-04-24 14:32:30 -04:00
c8f2e4bbc9
Return HTTP 400 for missing body on POST and PUT
2019-04-14 12:32:09 -04:00
ce44c35afc
Add @Deprecated annotation to IServerInterceptor::outgoingResponse(RequestDetails, IBaseResource, HttpServletRequest, HttpServletResponse) to match comment.
2019-03-18 21:35:36 -04:00
64facdab0a
Disabling test logging
2019-03-06 16:14:32 -05:00
3972e17e62
Add "is trusted" property to server exceptions
2019-03-01 13:58:13 -05:00
94f9ffa977
Avoid paging links when offset is artificially set very high
2019-02-25 20:44:22 -05:00
c6fcb4fcbf
Allow canonical subscription to hold multiple extensions with the same
...
URL
2019-02-16 15:28:39 -05:00
485335e975
Allow terminology service to work without having Lucene enabled for
...
simple ValueSet expansions
2019-02-14 20:47:28 -05:00
810f1ad969
Improvements to elements parameter as well as adding attributes to
...
RequestDetails
2019-02-07 16:45:59 -05:00
0f8c8d18e2
Bump version to 3.8.0-SNAPSHOT
2019-02-06 20:02:28 -05:00
207015c3af
Version bump to 3.7.0
2019-02-05 21:36:38 -05:00
4498335ae5
Elements query cleanup
2019-02-05 14:16:47 -05:00
d4af1ee2a3
Add tests and license headers
2019-02-04 16:34:39 -05:00
e401ec86e4
Enhanced elements ( #1192 )
...
Squashed merge: Add elements exclude mode
* Start working on elements enhancement
* Work on elements projection
* Work on elements filter
* Feature is now working
* Just some cleanup
* Address compile issues
2019-02-03 16:41:33 -05:00
9cf64f78d0
Deprecate a bad setter on RetfulServer, fix a paging issue, and add a
...
disabled unit test to the subscription matcher
2019-01-21 14:46:17 -05:00
cd1e0e881c
Add headers
2019-01-19 18:31:17 -05:00
b8755615b2
Allow AuthorizationInterceptor to read patients if the user has read
...
access to the individual instance
2019-01-14 13:53:08 -06:00
93bf2788ec
Add subscription narrowing interceptor and refactor RuleBuilder to be a
...
bit cleaner
2019-01-12 14:23:26 -06:00
aee7b2b882
Make sure that sub-request transaction searches and reads preserve HTTP
...
headers
2019-01-10 07:26:04 -07:00
ee52d6fb31
Add SearchNarrowingInterceptor
2019-01-09 20:20:46 -06:00
f8b232bb67
Issue 430: Generate OperationDefinitions for named queries, fix minor errors in generation of OperationDefinition for operations. Closes #430 .
2019-01-09 05:41:08 -05:00
62ae71c1c6
Allow authorizing delete operations via a transaction in
...
AuthorizationInterceptor
2019-01-07 15:43:36 -05:00
a8a97ae6b2
Two test fixes
2019-01-07 09:18:11 -05:00
3d94761bcb
Improve response for transactions
2019-01-06 18:08:32 -05:00
b2c7a2003e
Prevent a nullpointerexception in AuthorizationInterceptor
2019-01-06 16:42:29 -05:00
39f2062802
FIx errorprone detected issues
2019-01-05 13:43:55 -05:00
8f8385627f
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-01-05 11:33:08 -05:00
98d93df12a
License header updates
2019-01-04 16:22:15 -05:00
5b8fee869e
Add config options for default Prefer header and _total param on server
2019-01-04 16:12:45 -05:00
3a3d503772
head operation should return 200OK response code instead of 400
...
BadRequest
2018-12-21 05:40:35 -05:00
84a34eb3c9
Subscription module support ( #1147 )
...
* Reorganizing packages and dependencies to support standalone subscription running within a CDR container where all hapi modules are on the classpath.
Moved Subscription registry out of interceptor and introduced SubscriptionLoader
* Created ActiveSubscription and moved cache bits into it
* Moved ExecutorQueue stuff out into its own class
* Add test and supporting code to validate SubscriptionConstants.EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION behaviour
* Added SubscriptionCheckingSubscriber
* Moved a few beans to @ComponentScan
* Replaced use of beanFactory with concrete factory classes
* Switched test to use subscribablechannel
* Added SubscriptionLoaderFhirClientTest
* Confirm that our SubscriptionProviderFhirClient works with a live fhir client
* Register interceptors with DaoConfig instead of RestServer.
Also, Rename @VisibleForTesting methods with ForUnitTest
* Fix triggering service so it uses new subscriptionmatcherinterceptor
* Renamed "Database" classes to "Dao"
* processing -> matching naming change
2018-12-18 13:09:06 -05:00
81e8131ffc
Fix broken test
2018-12-09 19:36:03 -05:00
67f5ba6aa0
Also allow ServeMediaResourceRawInterceptor to handle vread requests
2018-12-09 14:29:40 -05:00
19954fa252
Resolve failing test
2018-12-09 14:09:12 -05:00
b442982310
Add media interceptor
2018-12-08 18:49:58 -05:00
b2179b1696
Syntax fixes for the JPA migrator
2018-11-30 12:39:37 -05:00
b41c222880
Require explicit declaration of authorizationinterceptor operation rules
...
on whether the response is authorized or not
2018-11-23 14:25:46 -05:00
ce3b7c82ce
Avoid issues when using subscription delivery in a serializing/queuing
...
environment
2018-11-22 17:53:42 -05:00
2e030eebaa
Make sure that reindexing happens correctly
2018-11-21 12:06:10 -05:00
58388bb614
Allow client to return methodoutcome instead of resdource for operation
...
call
2018-11-19 11:11:49 +01:00
67dbc802be
Better detection of binary content in ResponseHighlighterInterceptor
2018-11-18 14:32:54 +01:00
fad53c6669
Fix a test
2018-11-16 13:15:14 +01:00
0d0f67b299
Add GraphQL support to public server
2018-11-16 11:41:39 +01:00
02b23d74fd
Merge pull request #1117 from magnuswatn/logformatfix
...
Fixed small log formatting error in ExceptionHandlingInterceptor.java
2018-11-15 13:38:07 +01:00
52265d248f
Fixed log formatting error
2018-11-15 12:14:33 +01:00
75210d614b
Bump to 3.7.0-SNAPSHOT
2018-11-12 22:37:52 -05:00
63af04a7b4
Prepare for 3.6.0 release
2018-11-12 05:40:55 -05:00
a3e79b5759
License updates only
2018-11-08 15:28:09 -05:00
17a7fd4285
Merge pull request #1071 from volsch/master
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Multiple values of a HTTP header are reduced to one value.
2018-11-08 13:27:36 -05:00
4b790eddb6
Add additional authorization test
2018-11-07 11:01:29 +01:00
4315900ac0
Merge branch 'philips-3.6.0'
2018-11-01 09:15:27 -04:00
3bfdc61866
Fix a couple of test failures
2018-11-01 09:15:03 -04:00
3f6960d82b
Add multithreaded migrator tool
2018-11-01 05:42:51 -04:00
31ef4c68e1
Merge branch 'philips-3.6.0' of github.com:jamesagnew/hapi-fhir into philips-3.6.0
2018-10-31 05:51:13 -04:00
8955a9e54d
Add threading to migrator
2018-10-31 05:50:50 -04:00
7acba90d15
Update search logic
2018-10-30 22:43:16 -04:00
6b1ea5b989
Add tests for operation method binding
2018-10-30 15:22:39 -04:00
b66e01ce65
Allow plain server @Operation methods to declare a wildcard so that any
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opeeration invocations will be direected to them
2018-10-29 10:36:32 -04:00
aa177c1421
Authorize batch operation in AuthorizationInterceptor
2018-10-19 09:45:56 -04:00
da2763d8c8
Merge branch 'master' into philips-3.6.0
2018-10-17 22:38:27 -04:00
99cd4ce5f7
Allow for _total parameter
2018-10-17 09:47:35 -04:00
4e252063b8
Allow transactions and batches with transaction permission in
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AuthorizationInterceptor
2018-10-16 19:54:55 -04:00
796b12e33e
Fix bug in $everything processing
2018-10-15 05:44:53 -04:00
51a69f0dc9
Fixes to migrator and count logic
2018-10-13 12:02:19 -04:00
ca54409ce3
Add some null checks to the RestfulServer
2018-10-05 08:33:00 -04:00
62d6771814
Use a select count query for summary count searches in JPA server
2018-09-29 21:58:14 -04:00
3e445faf47
Squashed commit of the following:
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commit df641506885e09e63f80efc6c658d01a1a3a8142
Author: James Agnew <jamesagnew@gmail.com>
Date: Sat Sep 29 13:47:22 2018 -0400
Shrink validation resources
commit 4c1550eafa26f4235b4b8804741aecc03276b5c6
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 22:45:28 2018 -0400
Updates to get R4 working
commit 8332f15291006691ed9b07ead3e3524b0fc85510
Author: jamesagnew <jamesagnew@gmail.com>
Date: Fri Sep 28 09:02:13 2018 -0400
Ongoing work on gettign R4 working
commit f7146cab7aed937bb625a8aec95744d76db00041
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 05:21:01 2018 -0400
More work on sync
commit f48de4a10b1bab2584fee813017d9b27b237bfa9
Merge: 9e4f3cc722 aacb78b779
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:29 2018 -0400
Merge branch 'sync_r4' of github.com:jamesagnew/hapi-fhir into sync_r4
commit 9e4f3cc722668aae31a77b19bf9b032af3ae01b0
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:19 2018 -0400
Fix compile error
commit 7ec29e0ceda8f9013cbabb95767cbe15b4b81303
Merge: 23f7517325 002c4b3ff7dfb4de86f1
2018-09-29 13:48:35 -04:00
706e004b9d
Bump to 3.6.0-SNAPSHOT
2018-09-19 10:24:48 -04:00
321e88c811
License header updates
2018-09-14 05:25:07 -04:00
ce6a9dbc36
Fix regression from new jetty version
2018-09-11 08:27:34 -04:00
daef975734
Version bump to 3.5.0
2018-09-08 07:22:21 +08:00
b183bed52f
Multiple values for one HTTP header were reduced to the last value.
2018-09-06 19:33:34 +08:00
54c07263b6
Increase code lengths
2018-08-26 12:32:35 -04:00
df651c830e
Remove dynamic mode
2018-08-19 17:35:08 -04:00
78a7d64d2c
Merge pull request #1022 from alinleonard/master
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Patch operation on OperationsWhichAllowPreferHeader
2018-08-12 17:55:16 -04:00
7eb36c3392
Work on subscription
2018-08-11 16:14:53 -04:00
159377ac16
Add details to ResponseHighlighterInterceptor
2018-08-11 13:46:34 -04:00
20b1f883ba
Add extendible methods to RestfulServer
2018-08-08 17:21:25 -04:00
d9296b8e42
Add hook for error message
2018-08-08 15:14:39 -04:00
6586fc438d
Fix concurrency issue in hashmap
2018-08-03 13:00:57 -04:00
4eb3281fa6
Merge branch 'client_enhancements'
2018-07-30 18:34:49 -04:00
d6293cf9b3
Merge branch 'client_enhancements'
2018-07-30 09:42:38 -04:00
db0f082222
Merge pull request #996 from anamariaradu10/master
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Changes regarding behavior for Prefer header
2018-07-30 09:16:20 -04:00
d50dda19ae
Merge pull request #912 from InfiniteLoop90/911-contains-modifier
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Fixes #911 - Adds support for :contains modifier
2018-07-30 05:39:27 -04:00
fc9f2ec0fb
FIx test issue
2018-07-29 18:20:09 -04:00
518092cbd4
More updates
2018-07-29 17:10:26 -04:00
3a5556006b
Merge branch 'master' into master
2018-07-27 16:59:52 +03:00
9c39733aff
Fixed issues
2018-07-27 16:48:44 +03:00
f03d6b7c22
Allow configuration of default page size in SimpleBundleProvider
2018-07-27 18:34:12 +07:00
d04db790a3
Try to fix permissions issues in travis
2018-07-27 08:39:22 +07:00
a4e4111376
Fix a unit test
2018-07-26 18:08:59 +07:00
3c80238f0e
Ongoing work on interceptors
2018-07-24 17:22:21 +07:00
23083a9283
Improvements to client and SP indexing in JPA server
2018-07-23 17:37:49 +09:00
b4aa4c0e89
Add protection against HTML injection attacks
2018-07-19 08:56:22 -04:00
e6ca408f67
Permissions for operations
2018-07-12 18:40:15 -04:00
de701a6b7f
added patch for operation outcome
2018-07-09 15:35:50 +03:00
6d83edabb6
License header updates
2018-07-01 20:59:04 -04:00
495fd9f68e
Add support for patch in AuthorizationInterceptor
2018-07-01 11:46:11 -04:00
b3f7ab274d
License header updates
2018-06-21 14:44:34 -04:00
ed0b5f54a5
More authorizationinterceptor tweaks for better security
2018-06-12 21:52:01 +08:00
dc476aeeea
In my opinion these changes should be made in order to have the behavior
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for the Prefer header values as the one explained in the official
documentation from https://www.hl7.org/fhir/http.html
2018-06-12 14:04:05 +03:00
cc0e836680
Auth interceptor early checks ( #995 )
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* Validator fix
* Enhance AuthorizationInterceptor so that it tries to deny access earlier
for compartment searches that are outside the allowable compartment.
* FIx DSTU2 test that wasn't updated
* More test fixes
2018-06-10 17:48:20 -04:00
e7804b881c
Fix CI issue
2018-06-06 11:39:06 -04:00
3583dfd503
Correctly include project description in capabilitystatement
2018-06-03 16:19:33 -04:00
0e2c57fa60
Bumping version.
2018-05-28 17:44:38 -04:00
2871920734
Preparing release.
2018-05-28 10:45:47 -04:00
67f21426cb
Disable content header on response for non-create operations
2018-05-25 07:28:01 -04:00
b146a80502
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-05-23 16:09:34 -04:00
92dc258c6e
Update license headers
2018-05-23 16:09:23 -04:00
0544692dde
Don't include bogus powered by header
2018-05-23 13:12:27 -04:00
7f85608a2e
Fix accidental regression
2018-05-23 08:17:59 -04:00
2f2900e837
Improve indexing on JPA server in anticipation of a new indexing
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strategy in HAPI FHIR 3.5.0
2018-05-23 08:09:57 -04:00
eef3267bb8
Forward the cause of the InvocationTargetException to the REST layer.
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Discovered through #938
2018-05-17 17:38:23 +02:00
833cfd6988
Refactor information message
2018-05-16 17:35:40 -04:00
d29a9a7f96
AutohrizationInterceptor should correctly recognize type-level operation
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invocations
2018-05-15 16:14:10 -04:00
ccb859fdbe
FIxes to get the synced build working
2018-05-13 08:08:34 -04:00
b17eebd8d2
Squashed commit of the following:
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commit 2be11651c2b3bb5f9052f6b1082ba481a69c265f935938e92c43568a1f8de95894e6439393fb8f4f437f5051e420c51add4f7bf2b0a0e9adc73e75c9
2018-05-10 11:53:32 -04:00
14a070a47e
927 cli tooling is needed for creating and maintaining conceptmaps using csvs ( #934 )
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CLI tooling for import/export of ConceptMaps using CSVs has been implemented.
2018-05-10 11:12:45 -04:00
e299b062a6
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-04-24 19:14:56 -04:00
f1db751d1e
Update headers
2018-04-24 19:14:33 -04:00
09b1f547d0
Add expunge
2018-04-24 15:11:00 -04:00
a21d0a7752
Add auth tester methods
2018-04-22 19:30:09 -04:00
ac8e412e49
Fixes #911 - Adds support for :contains modifier
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Adds support for the :contains modifier in StringClientParam.
2018-03-30 23:49:06 -05:00
c5b286921e
Tests all passing
2018-03-30 15:18:57 -04:00
180336e076
Sync to master
2018-03-29 06:54:24 -04:00
418e82032f
Prep for 3.3.0
2018-03-29 05:48:13 -04:00
e9ee87210a
Merge pull request #806 from honestica/quickfix-imcompartment
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fix inCompartment for a collection of owners
2018-03-19 06:16:12 -04:00
ff04ab3358
${argLine} -> [at]{argLine}
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see:
http://maven.apache.org/surefire/maven-surefire-plugin/faq.html#late-property-evaluation
2018-03-19 10:45:33 +01:00
7e4877c524
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-03-01 06:20:46 -05:00
a6e59a0f76
License header updates
2018-03-01 06:20:37 -05:00
790aaeb4ea
Tests for #872
2018-02-28 21:34:32 -05:00
458401864b
Handle deletes properly in HashMapResourceProvider
2018-02-25 14:20:04 -05:00
84c72203b7
Add HashMapResourcePrvider
2018-02-25 13:16:02 -05:00
a395e48cd4
Don't crash when a multitenant server has a request for /
2018-02-04 18:44:37 -05:00
17b1ff727e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-02-03 15:48:09 -05:00
3cbf669007
Don't crash on startup if an invalid subscription is in the database
2018-02-03 15:47:48 -05:00
1d541c1588
Formatting issues
2018-02-02 14:03:53 -05:00
a16ac6ec87
Merge changes
2018-02-02 13:21:05 -05:00
351a2fc2f1
Fix #837 - Use non-legacy content-type for plain json and xml accept
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header
2018-02-02 06:43:19 -05:00
3f1ef0e7f6
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-02-01 06:33:00 -05:00
17edf5e727
FIx some license headers
2018-02-01 06:31:21 -05:00
b61887e841
Improve performance of base64 validation
2018-01-30 17:37:12 -06:00
1c5a07b5a0
Fix #822 - Respect chained method params in a transaction search
2018-01-30 16:20:25 -06:00
e52f582769
An experimental interceptor called VersionedApiConverterInterceptor has been added, which automaticaly converts response payloads to a client-specified version according to transforms built into FHIR.
2018-01-29 12:10:05 -06:00
044b9f584a
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-01-28 14:02:53 -06:00
f976b7bf7e
Add new interceptor method which enabled interceptors to modify response
2018-01-28 14:01:20 -06:00
2e4f80d7a3
Fix #831 - Remove useless TagListParam annotation
2018-01-26 10:03:21 -05:00
5750cfd03c
Prevent double calling server interceptor methods under certain
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conditions
2018-01-26 07:44:13 -05:00
ede32b6acc
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-01-23 11:33:52 -05:00
c081f7c15d
More rule fixes
2018-01-23 11:33:31 -05:00
0677f35847
Implement tenant ID checking in authorizationinterceptor
2018-01-23 11:32:35 -05:00
16038ece26
Version bump to 3.3.0-SNAPSHOT
2018-01-23 10:31:01 -05:00
4fd3e20d06
Remove duplicate resource body creation (Merge branch 'optimize_jpa')
2018-01-21 18:16:11 +08:00
001bdbc07e
Version bump to 3.2.0
2018-01-13 04:07:57 -05:00
6468ca474a
Verion bump to 3.2.0
2018-01-13 02:14:33 -05:00
f6c9e3d0fe
Add multitenancy support for server
2018-01-11 11:14:54 -05:00
b0e196e5cf
Merge branch 'master' into optimize_jpa
2018-01-10 06:27:15 -05:00
d375977410
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-01-08 14:14:42 -05:00
9a72927dbc
Fix #808 - Use version from meta if not found in the resource ID
2018-01-08 14:07:27 -05:00
0352d48720
Bump copyright message to 2018
2018-01-08 13:52:15 -05:00
6fc88caa51
More work on optimizing JPA
2018-01-08 07:15:58 -05:00
377bae8c16
Allow interceptors to modify request contents
2018-01-06 14:27:32 -05:00
b18e71d4f5
Added new callbacks to IServerOperationInterceptor to be invoked before
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other operation methods
2017-12-23 17:13:33 -05:00
cc40d47d2a
fix inCompartment for a collection of owners
2017-12-14 17:29:27 +01:00
6c85cd1375
Improve documentation and mark redundant methods as deprecated in
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IServerInterceptor
2017-12-12 21:45:54 -05:00
d710682fed
Fix searching in JPA with _id and _content params
2017-12-05 07:25:34 -05:00
3e296f9d1b
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-11-25 17:53:01 -05:00
6afe6804db
Fix #796 - Correctly escape spaces in generated URLs
2017-11-25 17:52:12 -05:00
5b909b4746
Version bump to 3.2.0-SNAPSHOT
2017-11-24 13:32:47 -05:00
42dd34252d
Version bump to 3.1.0
2017-11-23 13:27:21 -05:00
4887f18bb3
Further refine #762
2017-11-23 11:05:11 -05:00
ffac599a30
Credit and tests for #762
2017-11-23 06:42:10 -05:00
193edea1a1
Merge pull request #762 from dconlan/master
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Auth Interceptor - make sure Id has a type before trying to get its associated resource
2017-11-23 06:40:14 -05:00
6293bb112b
Merge pull request #769 from InfiniteLoop90/issue-768-exclude-stacktrace-jax-rs
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Fixes issue #768 to conditionally include stacktraces for DataFormatExceptions in OperationOutcomes when using AbstractJaxRsProviders
2017-11-22 20:00:44 -05:00
59f4177a59
Fix #750 - Elements are not preserved in page requests
2017-11-06 19:49:50 -05:00
75bfb6af1b
Add support for Binary X-Security-Context header in server
2017-11-02 11:38:43 -04:00
7c1ab11b02
Clean up places where CORS headers are declared - Related to #718
2017-10-30 16:37:47 -04:00
0fec0485e8
Merge pull request #717 from aehrc/feature/ifModifiedSince_bugfix_master
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fix bugs with inverted test for If-Modified-Since (impl and tests)
2017-10-26 18:31:19 -04:00
d461567433
Allow cache-control to be used with CORS
2017-10-26 09:08:10 -04:00
15ba0dff03
Clean up email subscription type
2017-10-26 06:02:12 -04:00
d0e747d6ec
Fixed issue #768 in a different way by wrapping the DataFormatException as an InvalidRequestException so that it still gets sent as a 400 response but now DataFormatException stacktraces can now be conditionally sent based on the ExceptionHandlingInterceptor#setReturnStackTracesForExceptionTypes(Class<?>...) configuration
2017-10-22 22:20:48 -05:00
1a7e43d2a8
Make sure we actually have a type associated with the resourceId or we get an exception
2017-10-17 15:07:51 +10:00
31fb1236a1
Reuse bundle ID when returning query cache results
2017-10-11 06:05:14 -04:00
87383ad802
Version bump to 3.1.0-SNAPSHOT
2017-09-27 21:23:34 -04:00
49bdaa1a45
Version bump to 3.0.0
2017-09-23 17:31:39 -04:00
984c0c387c
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-09-05 17:34:02 -07:00
2aa538bd56
Add ability for system to track unique constraints
2017-09-05 17:33:19 -07:00
0eea7b8f1f
Fix android build hopefully
2017-09-01 06:39:55 -04:00
022b556648
Add documentation for logginginterceptor processing time variable (which
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already worked, but wasn't documented)
2017-08-31 10:17:31 -04:00
cae21f4898
Update syntax highlighter to not use tables
2017-08-28 10:26:07 -04:00
ff8b5607f3
More test cleanup
2017-08-24 22:19:12 -04:00
1ec14f4a31
Small perf improvement for JPA terminology
2017-08-24 13:07:05 -04:00
James Agnew
Jafer Khan
Stig Rohde Døssing
Anthony Sute
jvi
bdenton
Ken Stevens
Petro Mykhaylyshyn
Tuomo Ala-Vannesluoma
Stig Rohde Døssing
Ken Stevens
Ken Stevens
Drew Mitchell
Corina Dalaban
Magnus Watn
Volker Schmidt
anamariaradu10
Ana Maria Radu
Alin
Diederik Muylwyk
patrick-werner
Clayton Bodendein
Jiajing LIANG
David Conlan