* Start work on refactoring how PIDs work
* Some test fixes
* Test fixes
* Test fixes
* Restore accidentally deleted line
* One more tweak
* Rework resource link extraction
* Test fix
* Split out transaction processor
* Updates
* Test fix
* Test fixes
* Test fixes
* Clean up LGTM warning
* Fix compile failure
* One more test fix
* Fix LGTM issue
* Add spot for metadata
* Add test logging
* Remove testing code
* More test logging
* Add some test logging
* Attempty to fix intermittent test failure
* Improve exception tracking
* Work on simplifying search param registry
* Fix compile
* Fix compile errors
* Fix two test bugs
* Version bumps
* FIx build issues
* Address a few Semmle issues
* Work on tests
* Some test fixes
* Test fix
* Fix deletions
* Test fix
* Fix intermittent test failure
* One more dependency bump
* Add some test logging
* Remove bad import
* Add some tests
* Test updates
* Add some logging
* Add more test logging
* Work on some test logging
* Fix compile error
* Work on codecov
* Work on codecov
* Remove test debug messages
* Start working on subscription processor
* Work on new scheduler
* Test fixes
* Scheduler refactoring
* Fix test failure
* One more test fix
* Updates to scheduler
* More scheduler work
* Tests now all passing
* Ongoing work on export
* Ongoing scheduler work
* Ongoing testing
* Work on export task
* Sync master
* Ongoing work
* Bump xml patch version
* Work on provider
* Work on bulk
* Work on export scheduler
* More test fies
* More test fixes
* Compile fix
* Reduce logging
* Improve logging
* Reuse bulk export jobs
* Export provider
* Improve logging in bulk export
* Work on bulk export service
* One more bugfix
* Ongoing work on Bulk Data
* Add changelog
* Work on indexing source
* Work on tests
* Refactor query count tests
* Unit test fixes
* Add some tests
* DAO fix
* Fix compile error
* Unit test fix
* Cleanup
* Test fix
* Fix compile error
* One more test fix
* Start work on delta operations
* Add changelog
* Some build fixes
* Move upload terminology command to CodeSystem resource
* Updates
* Some test fixes
* Add changelog
* Some test fixes
* More test fixes
* Test fix
* Add additional tests
* Transaction boundary fixes
* Start work on changing over
* Update tests
* More test fixes
* Work on generalizing binary access provider a bit
* Add expunge capability to binary storage, and also support actual binary
resources
* Work on binary provider
* Get the DB bound binary storage service working
* Test fixes
* Compile fix
* Fix compile error
* Test fix
* Test tweak
* Trying to figure out an intermittent failure
* Work on tests
* More work on tests
* Another test fix
* Ongoing work on core structures suport
* Ongoing work on this merge
* Ongoing work to clean up structures
* Credit for #1179
* Address compile issues
* Latest changes
* Work on parallel execution
* Work on getting tests passing
* Add H2 to migrator
* Test fix
* Start working on this
* Ongoing fixes to H2 branch
* Work on fixing tests
* Updated fixes
* Some test fixes
* More work on H2 migration
* Fixes to try and get the H2 migration building
* Test seem to be passing!
* Tweaks to locale randomization
* Add changelog
* Initial consent svc
* Ongoing consent svc work
* Add docs
* Ongoing consent service work
* Work on consent service
* More work on consent svc
* License header updates
* Ongoing consent svc work
* Some test fixes
* Some test fixes
* More work on consent svc
* Tests working
* Test fix
* Propagate RequestDetails to everything in JPA server
* More interceptor tweaks
* Fix compile error
* One more tweak to captured SQL
* Ongoing interceptor tweaks
* Ongoing interceptor tweaks
* More interceptor tweaks
* Interceptor tweaks
* Tweaks to tests
* Fix tests
* Test fix
* Raise warnings when encoding extensions with missing values
* Consent service work
* More interceptor tweaks
* Consent interceptor tweaks
* Add logging to test
* Make IBundle list interface more flexible
* Make matchResourceLinks visible
* Make matchResourceLinks visible
* Pull in-memory matching functionality out of subscription module into dedicated classes in searchparam module
* Added more accessors to version independent resource classes
* improved forcedid matching (needs to be verified by James)
filter out nulls from HashMapProvider.searchAll() (hopefully no tests depend on this)
* add AnyComposition
* cleanup of Any classes
* create searchparam config so people can use that module without using subscriptions
* create searchparam config so people can use that module without using subscriptions
* fix broken test
* added derivedFrom
* renamed daoRegistry.getResourceDaoIfExists to getResourceDaoOrNull
also added method to add a new dao to the registry and retrieve registered types
* TokenParam.equals
* add error check to searchable hashmap resource provider
* added support for R4
* add successor to measure
* delete conflict hook
start with failing test
* test passes.
hook is called.
* added delete conflict hook
all delete conflict tests pass
* added javadoc
* Performance test
* test bad interceptor case
* typo
* rename criteria matcher
* added support for multiple topics
* fix method name
* add effective period
* Temporarily excluding StressTest from build to try to get Travis under time limit
* change log
* review feedback
* review feedback
* review feedback
* move expunge out
* move to prototype
* turns parameters into fields
* cleanup control flow
* moved transactions outside of loops
* add expungeeverything
* moved daos out
* add expungeThreadCount
* add expungeBatchSize
* added partition runner to run in separate threads
* all done. just need to consolidate test code.
* Moar tests
* consolidated pointcutlatch into hapi-fhir-jpaserver-model
* final cleanup
* update javadoc
* change log
* failing test
* added delete
also @Transactional
* remove unused parameter
* fix compile
* race condition
(cherry picked from commit e1940d2fb20838859a205f2b96c833b0ce9f05eb)
# Conflicts:
# hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/expunge/PartitionRunnerTest.java
* ja feedback
* ja feedback
* fix bug in websocket subscription (It wasn't destroying the channel when there are no subscribers)
* add support for removing channel. Also synchronize removal (there was a race condition between sync and queue)
* keep deprecated method for backwards compatibility
* make websocket endpoint configurable
* make websocket context path configurable
* make websocket context path configurable
* trying mvn clean test instead of mvn clean install to see if the build goes faster
* that didn't work at all. reverting.
* change log
* Use a single IN clause for OR reference searches
* Add changelog
* One more attempt at getting the free port util to actually work... sigh
* One more tweak to free ports
* Bundle fix
* fix bug in ResourceIndexSearchParamQuantity
Move transaction boundary around SubscriptionMatcherInterceptor so it can be overridden in subclass
Lots of CRLF changes from a mvn -P DIST
* FIXME
* Avoid paging links when offset is artificially set very high
* Ongoing fixes
* Adding logging and clean up transaction processing
* Add changelog
* More work on queries
* Keep working on getting tests passing
* More test fixes
* More work on tests
* More test works
* One more test attempt
* Ongoing fixes
* One more change
* FIxes to search algorithm
* Add changelog
* Clean up for review
* Fixed NPE in token matcher when system is not null and value is null
* test opposite (null system not null value)
* added null protection to all matchers
* Address review comments
* Address broken test
* Trying to resolve DB ordering issues
* Starting work on this
* Working on narrative templates
* Work on new narrative system
* Account for some failing tests due to refactoring of narrative mode
* Another test fix
* More test fixes
* One more test fix
* Work on searches
* Address review comments
Squashed commit adding subscription debug logger
* Work on subscription debug logger
* Add subscription logging interceptor
* Remove unneeded variables
* A bit of cleanup
* Tweak the output logs a bit
* Address review comments
* Start work on this
* Work on interceptors
* Attempt fix
* Avoid environment dependency
* Test fixes
* One more test fix
* One more build tweak
* Lots of cleanup
* A bit more cleanup
* Still more cleanup
* Some test fixes
* Add legacy methods temporarily
* Don't auto-scan interceptor beans
* One more test fix
* rsolve merge conflicts
* Address review comments
* Reorganizing packages and dependencies to support standalone subscription running within a CDR container where all hapi modules are on the classpath.
Moved Subscription registry out of interceptor and introduced SubscriptionLoader
* Created ActiveSubscription and moved cache bits into it
* Moved ExecutorQueue stuff out into its own class
* Add test and supporting code to validate SubscriptionConstants.EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION behaviour
* Added SubscriptionCheckingSubscriber
* Moved a few beans to @ComponentScan
* Replaced use of beanFactory with concrete factory classes
* Switched test to use subscribablechannel
* Added SubscriptionLoaderFhirClientTest
* Confirm that our SubscriptionProviderFhirClient works with a live fhir client
* Register interceptors with DaoConfig instead of RestServer.
Also, Rename @VisibleForTesting methods with ForUnitTest
* Fix triggering service so it uses new subscriptionmatcherinterceptor
* Renamed "Database" classes to "Dao"
* processing -> matching naming change
Ken Stevens
James Agnew
Ken Stevens
Stig Døssing
Mathieu Roullet
Ken Stevens