310a4cdb58
Migrate CLOB columns to LOB (SMILE-3072) ( #3016 )
...
* Migration finished
* Work on LOBS
* Add to ClobMigrated annotation
* Deal with lobs
* Work on new approach
* HAPI FHIR version bump
* Add changelog
* Add license header
* Fix intermittent
* CLeanup
* Cleanup
2021-10-11 16:47:37 -04:00
aed718bd6f
Avoid redundant PID lookups in transaction processing ( #3061 )
...
* Avoid redundant PID lookups in transaction processing
* Add changelog
* Test fix
2021-10-11 13:45:57 -04:00
3c80dba90e
[3040] finish implementation ( #3049 )
...
* [3040] finish implementation
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_mdm/mdm_operations.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_mdm/mdm_operations.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_mdm/mdm_operations.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* [3040] throw exception if link exists
* [3040] add matchResult parameter/update documentation
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2021-10-07 17:42:21 +00:00
eca725afa4
Improve versioned URL support for ValueSet expansion ( #2994 )
...
* Add test
* Test fixes
* Work on expansion errors
* Fixes
* Test fixes
* Test fixes
* Test fixes
* Test fixes
* Test fixes
* Test fixes
* Test fixes
* Work on fix
* Test fixes
* Test fixes
* Test fix
* Cleanup
* Test fixes
* Remove accidental commit
* Test fixes
* Version bump
* Add changelog
* Fixes
* Test fix
* Fix conflicts
2021-10-03 19:47:23 -04:00
58a2f23c0d
Merge branch 'master' into jr-20210922-narrowing-interceptor
2021-09-28 07:41:39 -04:00
626c6f855c
handle queries on bare ids without explicit types
2021-09-24 14:57:05 -04:00
4a53d10c78
Merge branch 'master' into jr-20210922-narrowing-interceptor
2021-09-24 14:39:10 -04:00
8c145d1212
Merge branch 'master' into 3020_Add_documentation_for_$partition-management-create-partition
2021-09-24 13:01:38 -04:00
53c7476dae
hapi storage ( #3024 )
...
* first pass moving core storage classes to storage-api
* move term service apis
* nearly done
* rename hapi-fhir-storage-api to hapi-fhir-storage and move transaction processor
* rename hapi-fhir-storage-api to hapi-fhir-storage and move transaction processor
* create new SearchConstants class to store platform independent search constants
* move a couple of subscription services
* move transaction processor adapter to storage
* version bump
* move searchparam
* fix test
* fix compile includes
* fix text
* fix docs
2021-09-23 22:04:46 -04:00
8bd14ae024
[3020] add $partition-management-lists-partitions
2021-09-23 16:08:56 -04:00
712a6a798f
clean up
2021-09-23 12:27:32 -04:00
9e8164d73a
check search parameters for synonyms
2021-09-23 10:03:24 -04:00
e52d11b5ba
search narrowing interceptor responds with 403 Forbidden instead of creating an impossible query
2021-09-22 14:00:12 -04:00
a12ce73797
Add more tests
2021-09-21 15:31:36 -04:00
b8ef2f6763
Add changes
2021-09-21 15:25:46 -04:00
7379dee3d8
Merge branch 'master' into add-device-to-patient-compartment
2021-09-21 14:38:39 -04:00
060791aeb4
hapi-fhir-storage-api ( #3006 )
...
* rename hapi-fhir-jpaserver-migrate to hapi-fhir-sql-migrate and move hapi-tasks into jpaserver-persistence
* rename hapi-fhir-jpaserver-api to hapi-fhir-storage-api
* move bulk import apis
* create hapi-fhir-jpa
* create hapi-fhir-jpa
* move CircularQueueCaptureQueriesListener to japi-fhir-jpa
* move mdm logs to storage-api
* move gziputil to storage-api
* move quartz scheduling to hapi-fhir-jpa
* move default subscription channel factory to storage-api
* consolidated batch constants
* correct accidental Logs change
* remove dependency of cdr-api on cdr-persistence
* fix javadoc
* pom descriptions
* review feedback
2021-09-21 15:36:08 +00:00
5bbe69cd31
Move into data class
2021-09-15 21:17:03 -04:00
171f0f8724
fix rulebuilder
2021-09-15 09:04:45 -04:00
9070aa3571
wip
2021-09-15 01:20:46 -04:00
0a9d5344e3
remove more NPE, fix old test
2021-09-14 02:10:34 -04:00
fb8def21ae
remove potential NPE
2021-09-14 02:08:42 -04:00
75a16f3b13
Add docs and changelog
2021-09-14 01:54:59 -04:00
3d24a4ce16
Refactor to support arbitrary additional SPs based on Type for a compartment
2021-09-14 01:02:19 -04:00
5554431146
Avoid dead SearchParameter links in CapabilityStatement ( #2790 )
...
* Avoid dead SearchParameter links in CapabilityStatement
* Resolve fixmes
* Build fix
* Test fix
* Test fix
* Test fix
* Work on metadata
* Fixes
* Test fixes
* Test fix
* Test fix
* Test fixes
* Test fix
* Work on test fixes
* Test fixes
* Test fixes
* Test fixes
* Test fix
* Fix params
* Resolve fixme
* Adjust changelogs
* Version bump to 5.6.0-PRE7
* Add license header
* Bump version to 5.6.0-PRE5-SNAPSHOT
2021-09-11 18:27:18 -04:00
4ab0f7076a
remove problematic method
2021-09-09 09:29:45 -04:00
661ca02a6a
revert clobbered code
2021-09-09 09:28:01 -04:00
e77d84d008
fix test
2021-09-09 01:35:35 -04:00
5bc571d97d
fix test
2021-09-09 01:00:12 -04:00
81abe26cda
improve api
2021-09-08 20:08:06 -04:00
3ec47cb0ba
Bump version as we break the localcontainerentitymanagerfactory bean constructors args
2021-09-07 13:58:22 -04:00
346e29920a
Issue 2927 convert mdm clear to spring batch ( #2929 )
...
* initial roughout of mdm clear batch job
* still roughing out classes
* finished first draft of reader
* most tests passing now
* all tests pass. now FIXMEs
* FIXMEs done. Time for regression.
* fix test
* changelog and docs
* fix test
* pre-review cleanup
* version bump
* move spring autowire deps for cdr
* move spring autowire deps for cdr
* finally got beans working phew
* rearrange method calls so persistence module can perform clear operation on its own
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_mdm/mdm_operations.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* review feedback
* review feedback
* Remove inheritance
* fix beans
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
2021-09-03 14:58:19 -04:00
2fbe7d7443
Strip broken backport line
2021-08-23 16:39:19 -04:00
37ad73a422
Bump PRE version so we don't conflict downstream
2021-08-23 15:42:18 -04:00
1acaf325c5
Merge branch 'master' into rel_5_5_0
2021-08-23 14:50:29 -04:00
367b338d85
Updating HAPI to use latest core lib changes.
2021-08-18 11:06:14 -04:00
cf917d0f82
Version Bump
2021-08-15 16:54:38 -04:00
f68040aae9
fix SimpleJavaMail configuration username and password handling
2021-08-10 10:45:30 -04:00
1e0f843d6c
2852 - Simplify java mail code ( #2874 )
...
* testing
* [2852] adding SimpleJavaEmail
* [2852] refactor email sender code
* [2852] dependency cleanup
* [2852] add missing dependency
* [2852] add missing spring framework test dependency
* [2852] add change log
* [2852] add change log
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2852-simplify-java-mail-code.yaml
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* [2852] minor test code cleanup
* [2852] add more tests
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2021-08-09 15:59:47 -04:00
4fadc62066
Bump Hapi Version
2021-08-06 13:44:04 -04:00
f5dfc3a5ed
New reindex spring batch operation ( #2845 )
...
* first sweep to add new $reindex job
* first cut done. next up integration test.
* start roughing out reindex everything
* Failing test
* test passes
* add BundleUtil helper method
* rough in processEverything
* rough in processEverything
* fix mock test
* merge master
* Make BaseJpaTest.mySrd lenient.
* fix test
* reindex everything works with FIXMEs
* reindex everything more tests
* moar tests
* moar tests
* fix test
* fix test
* fix regression and fix test
* fix test cycle
* fixme
* fix test
* test provider layer
* reindex everything partition aware
* yay last fixme!
* run reindex in partitioned threads
* add fixmes for areas that require extra testing
* added transaction and log message
* manual integration testing
* changelog
* reindex all partitions
* bump hapi version
* fix test
* moar test
* pre-review cleanup
* fix javadoc
* review feedback
* review feedback
* review feedback
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2845-reindex-operation.yaml
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* review feedback
* review feedback
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/delete/job/ReindexJobTest.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/delete/job/ReindexJobTest.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/MultitenantBatchOperationR4Test.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/MultitenantBatchOperationR4Test.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/ResourceSearch.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-server/src/main/java/ca/uhn/fhir/rest/api/server/storage/IDeleteExpungeJobSubmitter.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
2021-07-29 19:18:49 -04:00
a5e6674e84
Version bump to 5.5.0-PRE7-SNAPSHOT
2021-07-22 08:41:16 -04:00
6d37749be8
Add non unique combo search params ( #2809 )
...
* Start work on nonunique combo search params
* Work on SQL
* Version bump
* A fix
* Test fixes
* Fixes
* Undo version bump
* Test fixes
* Resolve fixme
2021-07-21 19:14:14 -04:00
9f77c57e5a
Widen access for utility methods
2021-07-20 17:30:26 -04:00
7d4c39b953
Fixed bug
2021-07-02 18:18:10 -04:00
cfcc939caa
Fix broken tests, add license
2021-07-01 18:28:29 -04:00
de84e3f98d
add test for restfulserverutil link generation
2021-07-01 17:02:44 -04:00
f66f9b992e
Bump pre-version as this will break downstream implementations
2021-06-30 15:37:19 -04:00
d407501071
More docs
2021-06-30 15:04:05 -04:00
61260dd1b1
Slightly more portable solution for paging
2021-06-30 11:54:59 -04:00
James Agnew
katiesmilecdr
Jason Roberts
katie_smilecdr
Ken Stevens
Tadgh
markiantorno
Vadim Karantayer
VK-SMILECDR
Nick Goupinets