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8193 Commits

Author SHA1 Message Date
Tadgh 218325b385
Add backport info for full diff between 5.4.1 and 5.4.2 (#2784) 2021-07-08 16:25:18 -04:00
jamesagnew 6d4c2ef8f0 Expand access to SqlQuery 2021-07-08 16:16:27 -04:00
juan.marchionatto 1e9163c636 Add changelog. Address MR comments. 2021-07-08 14:52:19 -04:00
jmarchionatto ee1f1fb5b8
Merge pull request #2778 from hapifhir/2777-hapi-fhir-cli-Add-option-to-pass-request-headers-to-target-server 
Add header-passthrough option to hapi-fhir-cli commands which generate http requests(#2777)
 2021-07-07 16:47:28 -04:00
James Agnew 95306c3d64
Add NPM validation support module (#2782) 
* Add NPM validation support module

* Add changelog
 2021-07-07 16:28:41 -04:00
juan.marchionatto d83cf30a9e Remove double interceptor setup 2021-07-07 13:33:33 -04:00
Tadgh 3e7bc2a81e
Forward port 5 4 2 (#2781) 
* Add new version to enum

* Add backport tags, new VersionEnum, and new release folder for 5.4.2
 2021-07-07 10:10:07 -04:00
juan.marchionatto 41e1b4d45c Register parameter also for child classes overriding addHeaderPassthroughOption 2021-07-06 14:37:12 -04:00
juan.marchionatto 5c5bd1ec6c Organize imports 2021-07-06 09:31:53 -04:00
juan.marchionatto 5f36fe56b0 Add header-passthrough option to hapi-fhir-cli commands which generate http requests. 
Add class to parent request-generating commands.
Allow ValidationResult to be set number of detected errors to inform.
 2021-07-05 16:08:03 -04:00
James Agnew d762a07817
Partition patient interceptor (#2766) 
* Start work on interceptor

* Implemented

* Add interceptor and docs

* Add docs

* Compile fix

* Test fixes

* Test cleanup

* Test fixes

* Test fixes

* Improve error message

* Add broken tests

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2766-add-patient-id-compartment-interceptor.yaml

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/interceptor/PatientIdPartitionInterceptor.java

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

* Address review comments

Co-authored-by: Tadgh <garygrantgraham@gmail.com>
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
 2021-07-05 09:15:20 -04:00
jamesagnew 6bb5cbf764 Cleanup logging 2021-07-04 15:31:10 -04:00
Nick Goupinets 3bafdd7de1
Merge pull request #2776 from hapifhir/2775_address_interceptor 
Address interceptor bug
 2021-07-03 11:19:38 -04:00
Nick Goupinets 7d4c39b953 Fixed bug 2021-07-02 18:18:10 -04:00
James Agnew 4bb495e9d7
Fix NPE (#2774) 2021-07-02 05:29:49 -04:00
Tadgh a4fb72975d
Merge pull request #2767 from hapifhir/2765-mdm-paging 
Paging implementation for MDM query links operation
 2021-07-01 23:16:47 -04:00
Tadgh cfcc939caa Fix broken tests, add license 2021-07-01 18:28:29 -04:00
Tadgh 0a4a50f0a8 update docs 2021-07-01 17:05:14 -04:00
Tadgh de84e3f98d add test for restfulserverutil link generation 2021-07-01 17:02:44 -04:00
Ken Stevens b1334241c7
change out-of-order flag to switch-order flag so the default behaviour reverses (#2773) 
* change out-of-order flag to switch-order flag so the default behaviour reverses

* change log
 2021-07-01 15:17:39 -04:00
Tadgh 86519a892a Add tests for link builder 2021-07-01 09:43:53 -04:00
Tadgh b963520c98 Fix bug in link builder 2021-07-01 09:33:19 -04:00
Tadgh 0893ba0039 Fix up operation param types, fix bug in link builder 2021-06-30 23:17:04 -04:00
Tadgh 1eb82d633d Rip out pagingprovider requirement 2021-06-30 18:41:18 -04:00
Tadgh 950096d42f remove demand for paging provider 2021-06-30 18:21:08 -04:00
Tadgh 9f3b262d6d Add alternate caller methods 2021-06-30 17:54:09 -04:00
michaelabuckley 7aba83293a
Merge pull request #2771 from hapifhir/issue-2768-convert-mdm-submit-to-spring-batch 
$mdm-submit operation was only submitting 100 resources ...
 2021-06-30 16:14:01 -04:00
Tadgh f66f9b992e Bump pre-version as this will break downstream implementations 2021-06-30 15:37:19 -04:00
Tadgh f33696a165 Add changelog 2021-06-30 15:24:29 -04:00
Tadgh d407501071 More docs 2021-06-30 15:04:05 -04:00
Tadgh 883337a9f4 Tidying 2021-06-30 14:55:57 -04:00
Tadgh 91dee55279 Correct docs 2021-06-30 14:49:37 -04:00
Michael Buckley fa750d209e $mdm-submit operation was only submitting 100 resources and then stopping. 
It now correctly submits all requested resources.
 2021-06-30 14:48:28 -04:00
Tadgh 8f3cbb0a7f Refactor docs 2021-06-30 14:48:13 -04:00
Tadgh 61260dd1b1 Slightly more portable solution for paging 2021-06-30 11:54:59 -04:00
Clark Van Oyen 4a1b836582
Add Cortico to HAPI FHIR Global Atlas (#2769) 
Cortico uses HAPI FHIR to help medical providers engage seamlessly with patients over video, email and SMS.
 2021-06-30 08:36:38 -04:00
Tadgh a770d577cb Initial quick implementation of paging with tests 2021-06-29 17:46:03 -04:00
Ken Stevens 795fb31a3a
fixed mdm rules (#2764) 
* fixed mdm rules

* changelog

* review feedback jetbrains

* review feedback
 2021-06-28 23:24:37 -04:00
Ken Stevens 9500a1a7de
fix false rule matches (#2762) 
* fixed an issue with matching compartments to lists of ids

* change log

* Added extra guards against false rule matches.

* changelog

* fix inCompartment

* cleanup
 2021-06-27 10:34:32 -04:00
Ken Stevens 5565bf9930
fixed an issue with matching compartments to lists of ids (#2761) 
* fixed an issue with matching compartments to lists of ids

* change log
 2021-06-26 20:24:28 -04:00
Ken Stevens ea98e62656
collapse multiple owners for same compartment into shared compartment (#2760) 
* collapse multiple owners for same compartment into shared compartment

* changelog

* fix regression

* fix regression

* pre-review cleanup

* pre-review cleanup
 2021-06-26 11:48:47 -04:00
michaelabuckley 110173dafb
Merge pull request #2757 from hapifhir/2091-MemoryCacheService-confused-expiry 
Fix units on cache expiry
 2021-06-25 14:29:43 -04:00
michaelabuckley f1b8802f45
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2758-fix-cache-expiry-units.yaml 
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
 2021-06-25 14:19:04 -04:00
Michael Buckley b31e464a90 Found bad growing cache scenario 2021-06-25 11:01:41 -04:00
James Agnew 7185089c9d
Add forced offset search JPA interceptor (#2756) 
* Add support for offset searches

* Tests working

* Add changelog

* Test fixes

* Test fix

* More test fixes

* Add commit counter
 2021-06-25 10:40:39 -04:00
Tadgh c64269054b
Merge pull request #2752 from hapifhir/2751-jv-bump-bulk-export-job-request-length 
Increase bulk export job request length
 2021-06-25 09:03:35 -04:00
Michael Buckley 1367e61c93 changelog 2021-06-24 19:13:54 -04:00
Michael Buckley e74dec1fa6 Fix units on cache expiry 
Added a test to abuse Caffeine
 2021-06-24 19:04:41 -04:00
Josiah 914cf53b62 Merge branch 'master' into 2751-jv-bump-bulk-export-job-request-length 2021-06-24 15:56:05 -04:00
Tadgh 8a2ad8dad2
Merge pull request #2755 from hapifhir/fix-test-bug 
Swap to URI instead of token for test
 2021-06-24 15:55:18 -04:00