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5472 Commits

Author SHA1 Message Date
James Agnew 385a885abf Add ability for resource source to be specified by header 2019-10-24 08:32:52 -04:00
James Agnew 0d3f7d4a03 Correctly handle searching by source in JPA server 2019-10-23 06:58:16 -04:00
Ken Stevens be3ce538ed
Merge pull request #1557 from jamesagnew/ks-better-inmemory-error 
Improved in-memory error messages
 2019-10-23 00:05:58 -04:00
Anthony Sute 306b02e147 Additional tracing statements. 2019-10-22 20:41:52 -04:00
James Agnew 19247ffb46
Allow updating externalized binary (#1556) 
* Add non working test

* Add a test

* FIx test

* Allow updating existing externalized binary data

* Add test

* Remove unneeded test

* Fix test
 2019-10-22 18:10:03 -04:00
James Agnew 9e44049847 Allow for improved overriding of RestfulServer#newRequestDetails 2019-10-22 18:09:21 -04:00
James Agnew 371bf2e5cf Disable unit test SQL logging 2019-10-22 17:27:36 -04:00
James Agnew 9b94e4e26d
Allow uploading term deltas using CS resource (#1555) 
* Work on accepting codesystem reources for delta operations

* Ongoing work on term uploader

* Restore the ability to use CodeSystem resources for the delta

* Add tests

* Fix NPE

* Test fixes
 2019-10-22 17:11:39 -04:00
James Agnew 464c6c5b45
Upgrade dependencies and addess Semmle issues (#1554) 
* Version bumps

* FIx build issues

* Address a few Semmle issues

* Work on tests

* Some test fixes

* Test fix

* Fix deletions

* Test fix

* Fix intermittent test failure

* One more dependency bump

* Add some test logging

* Remove bad import

* Add some tests

* Test updates
 2019-10-22 17:10:58 -04:00
Ken Stevens dbcff8d1fa Merge remote-tracking branch 'remotes/origin/master' into ks-better-inmemory-error 2019-10-22 17:10:06 -04:00
James Agnew a375f761cb FIx typo in pom 2019-10-22 14:17:25 -04:00
James Agnew 5809457335 Credit for #1526 2019-10-22 14:01:21 -04:00
jelmer.terwal c003047ca9 Split test from example 2019-10-22 13:58:52 -04:00
jelmer.terwal a859b210e3 Previously the server would not start when using a CodeableConcept in a List in combination with Kotlin 2019-10-22 13:58:52 -04:00
jelmer.terwal c337fdde14 Override breakes stuff here for Kotlin 2019-10-22 13:58:52 -04:00
jelmer.terwal 61adf61fc0 Remove no longer needed stuff 2019-10-22 13:58:52 -04:00
jelmer.terwal 5002a087bb Some work on jamesagnew/hapi-fhir/#1297 2019-10-22 13:58:52 -04:00
Ken Stevens 3115447748 Merge remote-tracking branch 'remotes/origin/master' into ks-better-inmemory-error 2019-10-22 10:46:31 -04:00
Ken Stevens d0704269d7 ready for rereview 2019-10-22 10:13:49 -04:00
Ken Stevens 427f7397da ready for rereview 2019-10-22 10:13:49 -04:00
Ken Stevens 0f40b2c48f npe check for binary storage interceptor 2019-10-22 10:13:49 -04:00
Ken Stevens 2e7876b682 Merge remote-tracking branch 'remotes/origin/ks-binary-storage-NP-check' into ks-better-inmemory-error 2019-10-22 09:33:47 -04:00
Ken Stevens ef35c4e7be ready for rereview 2019-10-22 09:32:10 -04:00
Ken Stevens 2e532e4e98 ready for rereview 2019-10-22 09:29:18 -04:00
Ken Stevens d85e73c6fd Merge remote-tracking branch 'remotes/origin/master' into ks-binary-storage-NP-check 2019-10-22 08:58:51 -04:00
James Agnew 73961072a6
Handle invalid chains on custom search params (#1553) 
* Handle invalid chains on custom search params

* Add some more tests

* One more test fix
 2019-10-21 21:21:33 -04:00
Ken Stevens 347a66c429 improve in-memory error messages 2019-10-21 16:44:52 -04:00
Ken Stevens 842953eb1e npe check for binary storage interceptor 2019-10-21 10:59:25 -04:00
James Agnew 0af79b84d9
Use webjars instead of including JS deps (#1551) 
* Use webjars instead of including JS deps

* Add changelog
 2019-10-21 07:22:55 -04:00
James Agnew bfbc73caaf
Auto externalize binary contents (#1550) 
* Auto externaliZe binary attachments

* Work on externalization

* Auto externalize binary content

* Work on tests

* Fix alert
 2019-10-19 09:01:00 -04:00
James Agnew 985cd49892 Test fixes 2019-10-18 16:36:05 -04:00
James Agnew 8edaebba9f One more fix to test infratructure 2019-10-18 15:57:09 -04:00
James Agnew 0cddb54476 Remove accidental commit 2019-10-18 15:52:03 -04:00
James Agnew b51a93a2b5 Intermittent test fix 2019-10-18 15:46:02 -04:00
James Agnew 06ab9c6f33 Add a changelog 2019-10-18 14:11:55 -04:00
James Agnew a71d969ba1 Add line numbers to validation failures 2019-10-18 14:10:47 -04:00
James Agnew 13b80a294a Test fix 2019-10-18 07:13:11 -04:00
James Agnew e6ae368424 Credit for #1547 2019-10-18 07:07:02 -04:00
Tuomo Ala-Vannesluoma 9eddecaee7 Refactor indexed param creation to single method 2019-10-18 07:03:02 -04:00
Tuomo Ala-Vannesluoma efcde45bb7 Fix length for normalized value 2019-10-18 07:03:02 -04:00
James Agnew b2f68fd6ff Add test for #848 2019-10-17 19:42:29 -04:00
James Agnew 5dcbed0438 Fix foreign key handling when dropping tables 2019-10-17 15:52:35 -04:00
Stig Rohde Døssing 79e97b24e5 Fix #1481 - Add missing dependency to hapi-fhir-docs 2019-10-17 13:57:58 -04:00
James Agnew 9fff043892 Fix #1481 - Remove Jetty reference 2019-10-17 11:41:57 -04:00
James Agnew 895c9a1f2c Fix #1546 - Remove redundant entries in includes 2019-10-17 11:33:40 -04:00
James Agnew 0971998f57 Fix #848 - Pass raw JSON to the validator 2019-10-17 11:28:48 -04:00
James Agnew 12a74e6cbc
Fix term uploads and validate against valueset recalculation (#1540) 
* Start refactoring terminology delta operations

* Work on delta operations

* Work on concept saving

* Split term services into smaller services

* Work on term delta operations

* Work on term svcs

* Work on term operations

* More work on delta uploader

* Add a test

* Wrk on term service

* Fix compile error

* Some refactoring

* Test fix

* Test fix

* Test fixes

* Test fix

* Test fixes

* Test fixes

* Work on delta

* Work on tests#

* Test fixes

* Improve resequencing logic

* Build test

* More testing

* More build testing

* More work on tests

* CHange test logging

* Fix term service PID issue

* Update src/changes/changes.xml

Co-Authored-By: Diederik Muylwyk <diederik.muylwyk@gmail.com>

* Address review comment

* Some cleanup

* Test fix

* Fix some tests

* Work on upload command

* Test fixes

* Work on validation fixes

* Work on validation against pre-expansion

* Work on direct validation

* A bit of cleanup

* Add some javadoc

* Force another build

* Test fixes

* Fix tests

* Fix tests
 2019-10-15 21:31:29 -04:00
James Agnew 8b2ab51bc6
Handle canonical questionnaire refs in validator (#1544) 
* Handle canonical questionnaire refs in validator

* FIx changelog

* Fix canonical reference

* Build tweak

* Change to trigger a build
 2019-10-15 20:27:53 -04:00
James Agnew 1618ccc14c FIx compile error 2019-10-15 20:06:11 -04:00
James Agnew 839f935401 remove unnecessary index 2019-10-15 19:07:37 -04:00