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129 Commits

Author SHA1 Message Date
anamariaradu10
3a5556006b
Merge branch 'master' into master 2018-07-27 16:59:52 +03:00
Ana Maria Radu
9c39733aff Fixed issues 2018-07-27 16:48:44 +03:00
James Agnew
b4aa4c0e89 Add protection against HTML injection attacks 2018-07-19 08:56:22 -04:00
jamesagnew
a9291b4e4b Add security test 2018-07-19 08:09:07 -04:00
James Agnew
e6ca408f67 Permissions for operations 2018-07-12 18:40:15 -04:00
James Agnew
03e7b018a6 Add skeleton for the $process-message operation in JPA erver 2018-07-12 17:52:24 -04:00
James Agnew
b929864873 Merge branch 'improve_jpa_indexes' 2018-07-01 12:08:03 -04:00
James Agnew
495fd9f68e Add support for patch in AuthorizationInterceptor 2018-07-01 11:46:11 -04:00
jamesagnew
e5cb609f4d Performance improvements 2018-06-24 20:02:27 -04:00
James Agnew
e9fffd3cdc Allow indexing in custom search params to descend into contained 
resources
 2018-06-22 11:22:07 -04:00
James Agnew
ed0b5f54a5 More authorizationinterceptor tweaks for better security 2018-06-12 21:52:01 +08:00
James Agnew
cc0e836680
Auth interceptor early checks (#995) 
* Validator fix

* Enhance AuthorizationInterceptor so that it tries to deny access earlier
for compartment searches that are outside the allowable compartment.

* FIx DSTU2 test that wasn't updated

* More test fixes
 2018-06-10 17:48:20 -04:00
James Agnew
6feb23896f Hopefully fix #983 2018-06-06 15:51:23 -04:00
jamesagnew
987679483a Version bumps 2018-06-03 15:29:10 -04:00
jamesagnew
9db3be8536 Include implementation URL in generated capabilitystatement 2018-06-03 14:22:15 -04:00
jamesagnew
d127a89047 Some test fixes 2018-05-30 11:01:43 -04:00
James Agnew
a52805e504 Work on JDK9 support 2018-05-30 05:45:08 -04:00
James Agnew
7951d883d0 Merge branch 'master' into java9 2018-05-29 08:43:21 -04:00
Diederik Muylwyk
0e2c57fa60 Bumping version. 2018-05-28 17:44:38 -04:00
James Agnew
27d0d4d7af Fix build failure 2018-05-28 11:51:26 -04:00
Diederik Muylwyk
2871920734 Preparing release. 2018-05-28 10:45:47 -04:00
jamesagnew
67f21426cb Disable content header on response for non-create operations 2018-05-25 07:28:01 -04:00
James Agnew
a3687e446e Correctly handle missing search params with new indexing infrastructure 2018-05-23 11:42:38 -04:00
James Agnew
2f2900e837 Improve indexing on JPA server in anticipation of a new indexing 
strategy in HAPI FHIR 3.5.0
 2018-05-23 08:09:57 -04:00
jamesagnew
98d997c620 Add changelog and credit for #867 2018-05-23 06:21:00 -04:00
James Agnew
4d93b78c24 Credit for #836 2018-05-22 08:44:17 -04:00
patrick-werner
07d0cc7876 Merge branch 'master' into bpCheckValFix 2018-05-17 09:53:41 +02:00
patrick-werner
78f9d6333a temp. fixed: "Attempt to read a single element when there is more than one present" #949 
Will be overwritten by next RI import!
 2018-05-17 09:43:35 +02:00
patrick-werner
730d02b7c6 added R4 core-extension validation support 2018-05-16 18:51:55 -04:00
James Agnew
d29a9a7f96 AutohrizationInterceptor should correctly recognize type-level operation 
invocations
 2018-05-15 16:14:10 -04:00
jamesagnew
4d62120a18 Fix issues reported by errorprone 2018-05-15 08:44:15 -04:00
James Agnew
a3ff08d9ec
Replace phloc with ph for #775 (#930) 
* Replace phloc with ph

* Enable schematron tests

* Make HAPI-FHIR ph-schematron on OSGI

* Work on getting tests passing

* Another test fix

* Fix up transaction handling for DSTU2

* Add changelog

* Avoid double transaction

* Dont use readonly

* One more test fix

* Update to snapshow build

* Resolve a circular dependency

* Try to fix tests

* Solve recurring NPE in DSTU2 tests

* Fix one more test

* Test fix

* More test threading fixes

* One more attempt to get tests passing

* Refactoring for tests

* Refactoring for tests
 2018-05-14 17:38:40 -04:00
jamesagnew
3d762b984b Sync to R4 definitions 2018-05-12 19:35:42 -04:00
James Agnew
b17eebd8d2 Squashed commit of the following: 
commit 2be11651c212ede9d50956ba9d4a802885e9dbed
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:50:53 2018 -0400

    Update changelog

commit b3bb5f9052ecebce87588e2d5f5be983fbd0fd2e
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:19:28 2018 -0400

    Parameter updates

commit f6b1082ba46f4d0d47d3e0094e904d527b0ebf75
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 07:24:30 2018 -0400

    More test fixes

commit 81a69c265f7347f6a23c73b827c79a8a4051b21b
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:26:48 2018 -0400

    Fix compile error

commit 935938e92c697be1940b788a46c38ffd5ce84b84
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:25:18 2018 -0400

    Another test fix

commit 43568a1f8dd6325bebba2cd47ffb42bee7f12aa6
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:18:06 2018 -0400

    Fix compile error

commit e95894e643dda0a70ab5ab7be4363cae4ce5c4e6
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:13:50 2018 -0400

    More work on tests

commit 9393fb8f4f93e69f80293c0488cc16f74613f25c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 05:36:27 2018 -0400

    One more fix

commit 437f5051e4742eb500ec1eb1852e4c6105927c51
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 21:32:10 2018 -0400

    Work on validator

commit 20c51add4fbb5c33d7b5f8517fe9bf9a4f314292
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 19:34:10 2018 -0400

    Validator fix

commit 7bf2b0a0e93b71f6fbc46ab3b1dbd0fba6367959
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 18:44:04 2018 -0400

    Fix test

commit adc73e75c9b392ed964588f03970ab1afdb4cdef
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 17:22:34 2018 -0400

    Merge validator
 2018-05-10 11:53:32 -04:00
James Agnew
7688be1231 Work on getting java9 building 2018-05-03 18:34:29 -04:00
James Agnew
593a705365 Performance enhancements on the CapabilityStatement generator for JPA 
server
 2018-04-28 11:06:42 -04:00
James Agnew
09b1f547d0 Add expunge 2018-04-24 15:11:00 -04:00
James Agnew
07e7af746f Work on expunge operation 2018-04-22 22:03:23 -04:00
James Agnew
a21d0a7752 Add auth tester methods 2018-04-22 19:30:09 -04:00
James Agnew
591539cf13 Add expunge method 2018-04-22 18:34:56 -04:00
jamesagnew
8c889267e5 One more parser fix 2018-04-18 06:20:11 -04:00
James Agnew
162069776a Correctly handle encoding contained resources where some have user 
assigned IDs and some do not
 2018-04-17 18:26:06 -04:00
jamesagnew
c5b286921e Tests all passing 2018-03-30 15:18:57 -04:00
jamesagnew
180336e076 Sync to master 2018-03-29 06:54:24 -04:00
jamesagnew
53c2d8a38d Merge branch 'master' into loinc_loader_update 2018-03-29 06:21:55 -04:00
jamesagnew
418e82032f Prep for 3.3.0 2018-03-29 05:48:13 -04:00
James Agnew
d9c167455e Make sure we correctly clean up resources 2018-03-27 15:20:22 -04:00
James Agnew
b56d65ef5b
Merge pull request #871 from johnpoth/hapi-fhir-osgi 
Implement #826 - add OSGI support and Apache Karaf features with inte…
 2018-03-27 06:06:34 -04:00
James Agnew
29c09e40f0
Merge pull request #858 from patrick-werner/master 
added Test for #11 to Dstu3 and R4, fixed #853
 2018-03-24 06:31:24 -04:00
James Agnew
308ac63a77 Merge branch 'master' into loinc_loader_update 2018-03-20 07:53:41 -04:00