Commit Graph

3052 Commits

Author SHA1 Message Date
Nick 1d7ec3cc13 Merge remote-tracking branch 'origin/master' into ng_20201218_survivorship_poc 2021-01-15 14:18:27 -05:00
jamesagnew 4791c81aec Improve package loading logs 2021-01-15 06:19:57 -05:00
Nick 57662eedb3 Merge remote-tracking branch 'origin/master' into ng_20201218_survivorship_poc 2021-01-12 09:22:38 -05:00
jamesagnew ef407d85bf Add logging 2021-01-12 08:56:12 -05:00
Ken Stevens 520400d6ea
added IPagingProvider.canSearchByOffset() (#2281)
* init rev

* added IPagingProvider.canSearchByOffset()
consolidated parameters in bundle link methods

* fix refactoring error

* add @Nonnull to BundleLinks parameter

* null check

* fix test

* cleanup

* fix refactoring

* final cleanup

* review feedback

* review feedback

* review feedback
2021-01-11 20:42:41 -05:00
Nick 5aa85c7e17 Survivorship 6 2021-01-11 17:22:06 -05:00
Nick 684b77d396 Merge remote-tracking branch 'origin/master' into ng_20201218_survivorship_poc 2021-01-11 09:21:29 -05:00
Frank Tao f6d4a40388
UCUM Service Support (#2261)
* Added UcumServiceUtil

* Removed ucum-essense.xml

* Added ucum service existing test cases passed

* Added more test cases

* Merge branch 'master' into ft-ucum-support

# Please enter a commit message to explain why this merge is necessary,
# especially if it merges an updated upstream into a topic branch.
#
# Lines starting with '#' will be ignored, and an empty message aborts
# the commit.

* Added back extractReferenceParamsAsQueryTokens

* Added changelog and migration script

* Added length for the string type

* Moved UCUM util to hapi-fhir-jpaserver-model

* Renamed UCUM support to Normalized Quantity Search Support

* Moved setNormalizedQuantitySearchNotSupported to AfterEach

* Changed migrate task to 530

* Removed comments

* Fixed in memory search issue and added more test cases

* Fixed the version order

* License header updates

* Updated based on review comments

* Updated the migration task based on review comments

* Fixed RES_TYPE with type String and length 100

* Changed myParamsQuantityNormalizedPopulated type to Boolean class
2021-01-10 21:05:24 -05:00
Frank Tao 88b01a3bb4
Changed the minGramSize back to 3 (#2279) 2021-01-10 09:02:59 -05:00
Nick 9338a4e73e Survivorship 5 2021-01-08 19:25:25 -05:00
jamesagnew 0b6e8e3f4d Add license header 2021-01-08 16:35:42 -05:00
ianmarshall 14270e8aa4 Remove the now redundant PackageSystemRequestDetails class. 2021-01-07 10:18:39 -05:00
ianmarshall e23e3c660c Merge remote-tracking branch 'origin/master' into im_2021_01_04_package_load_with_partitioning 2021-01-06 12:23:21 -05:00
ianmarshall 634f7a8026 Fix typo. 2021-01-06 10:33:47 -05:00
ianmarshall 659e83f451 Address use case where packages include non-conformance resources. Update documentation as well. 2021-01-06 10:29:10 -05:00
jamesagnew 496a8bd3cd Test fix 2021-01-05 18:41:43 -05:00
James Agnew 0bb878e4a8
Repository validation enhancements (#2270) 2021-01-05 18:22:34 -05:00
jamesagnew 12d366c86e License header updates 2021-01-05 18:13:14 -05:00
Tadgh efc6809ea6
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)

* Fix spatial API changes, work on BaseTermReadSvcImpl

* Most of the way through the various filter property conversions

* Finished i think with BaseTermReadSvcImpl

* Compiling, but definitely broken

* Start test compilation failures

* All tests compiling (i think)

* remove suggest keywords operation

* Fix bootstrap errors, still have to deal with transient fields

* Rollback CR

* More refactoring, got IDs baked back into docs

* Fix coord util, fix a few more fields which require projection

* merge fixes

* begin refactor of valuesetexpansion tests

* fix another test

* Update tests

* remove todos, add TestContainers

* Fix descendant in

* Add testcontainers, fix another test

* fix more tests, replace embedded es

* Rip out embedded elastic, replace with TestContainer

* merge conflicts for new analyzers

* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs

* Remove dead deps, update testcontainer

* Remove java-hamcrest

* Pull asserts up, refactor tests to pass in RP tests

* Update V2 check

* Remove suggest keyword tests

* Split line for testing

* Fix perhaps one of the dumbest programming mistakes in my career so far

* Refactor tests which no longer rely on a strict known order

* Fix up test config, disable log test temporarily

* Remove log4j from being transitively pulled in. re-enable test

* Update log4j exclusions with new bridge. Update test to check for core class

* Move dependency to root pom in dep management section

* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment

* update testst, remove todos

* Add hibernate props provider method, add elastic regexp query

* Add todo for high level client builder

* Modify ElasticsearchRestClientFactory to support HTTPS hosts

* Remove protocol extraction from rest url

* do we even need to index this...?

* remove purge of non-indexed resources

* Add longer timeout to testcontainers

* Add task to add docker CLI to azure pipeline via task, for testcontainers

* WIP remove this

* Dont update version

* Add test for duplicate termconcepts

* Use real hibernate ORM methods

* merge issues

* Add partitionsettigns bean to match master

* Trying to debug testcontainers on azure...

* Trying to debug testcontainers on azure...

* Run even on previous failure

* Fix testcontainer port binds

* Add full text logs attaching, and test reporting

* I love yaml

* Remove comment

* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue

* Modify TX beheaviour

* wip

* Rework to use config and mocked beans for partition-aware lastN

* rework to not use beans and just inject vars i need for test, keps test envs cleaner

* update azure pipeline to only copy test results

* Remove erroneous publish

* Always get test logs

* Make it so indexing works,

* Add todos

* revert deleteByPid

* Work on test fixes

* Test fixes

* Test fixes

* Another test fix

* Test fix

* Work on tests

* Test fixes

* All tests passing locally

* Fix test failure

* FIx build error

* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider

* Update ngram of token filters

* Tidying

* subvert the purpose of hibernate elastic props builder to inject template

* dead space

* Rename changed class

Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
ianmarshall 446dd5c782 Fixed package loading to enable loading of binary package files into the default partition when partitioning is enabled. 2021-01-05 17:51:04 -05:00
James Agnew d943260927
Rework valueset index for MySQL (#2269)
* Rework valueset index for MySQL

* Add changelog
2021-01-05 10:03:33 -05:00
ianmarshall 1f0ea21cde Changes per code review plus test fixes. 2021-01-04 19:09:04 -05:00
ianmarshall bac47dbbf6 Changes per code review plus test fixes. 2021-01-04 19:06:39 -05:00
ianmarshall 8a2dfe86fd Merge remote-tracking branch 'origin/master' into 2260-fix-sorting-for-mysql 2021-01-04 09:00:21 -05:00
James Agnew 3e6d80bdc2
Fix SQL Server paging with new querybuilder (#2265)
* Fix SQL Server paging with new querybuilder

* Add changelog
2021-01-02 11:13:51 -05:00
jamesagnew d20b07c78e Update license headers 2021-01-01 15:50:24 -05:00
jamesagnew f30999b053 License header updates 2021-01-01 15:07:23 -05:00
James Agnew 8f8c5c31f1
Add validation rules interceptor (#2264)
* Start work on validation rules interceptor

* Work on interceptor

* Add tests

* Work on validation interceptor

* Work on interceptor

* Test fix

* Documentation tweaks
2021-01-01 14:29:10 -05:00
ianmarshall 63e0c90023 Change order by clause in search query to support MySQL, MSSQL and MariaDB. 2020-12-24 13:54:37 -05:00
Frank Tao 89cf6e6293
Fixed the pre-expansion with filter issue (#2257)
* Fixed the pre-expansion with filter issue

* Changed minGramSize to 3 instead of 2
2020-12-17 23:31:33 -05:00
Tadgh e79114e2ec
Un-revert the MDM changes, now that issues have been addressed (#2226)
* Backward compatibility changes

* Revert "Revert "Remove all references to Person from EMPI.""

* Updated docs

* Removed mdm channel references

* Initial implementation

* fix coarseness bug. Fix tests. reinitialize silly bean

* Add forgotten json file

* Generic provider PoC

* Refactored provider to use BundleBuilder

* Removed version-specific MDM providers

* Addressed code review comments

* Fixed after merge

* Fixed docs

* MDM SVG for Update Use Cases

* Removed obsolete docs

Co-authored-by: Nick <nick.goupinets@smilecdr.com>
Co-authored-by: Nick Goupinets <73255752+nvg-smile@users.noreply.github.com>
2020-12-17 10:12:53 -05:00
Frank Tao effbd19924
Merge pull request #2240 from hapifhir/ft_support_composite_sort
Add support for composite sorting
2020-12-16 16:54:56 -05:00
Frank Tao de845300c2 Updated based on the review comments 2020-12-16 15:48:10 -05:00
Frank Tao 0411967e26 Added composite sort test case for R5 2020-12-11 22:25:12 -05:00
Frank Tao dcbdc83d8e Supported composite sort 2020-12-11 21:50:32 -05:00
Ruslan Zinovyev 368e9a9b56
Rz 20201207 remove component scan (#2228)
* deleted component scan

* added fixme

* fix abstract bean

* fixed

* final bean fixes

* added fixes

Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-12-11 09:18:27 -05:00
James Agnew e4d6c51290
Allow plus symbol in email address match url (#2224)
* Allow plus symbol in email address match url

* Add changelog
2020-12-09 21:52:03 -05:00
Tadgh 0938d72b51
Revert "Remove all references to Person from EMPI." 2020-12-09 14:57:00 -05:00
Nick efb429b319 Fixed todos and reverted FK check in the test 2020-12-08 13:00:02 -05:00
Nick 6018dd0537 Fixed ambitious schema update 2020-12-08 10:44:11 -05:00
Nick d3c0944388 Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references 2020-12-07 22:02:45 -05:00
Nick fd90eb699f Review updates 2020-12-07 18:03:56 -05:00
James Agnew fd528a0f7d
Improve error message on unsupported resource type (#2221)
* Improve error message on unsupported resource type

* Add changelog
2020-12-07 17:35:51 -05:00
Nick f5f7f2df14 Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references 2020-12-07 11:55:51 -05:00
James Agnew d958764d49
Partition data leaks across searches (#2220)
* Partition data leaks across searches

* Add changelog

* Resolve FIXME

* Add test logging

* Test fix

* Test fix
2020-12-06 16:32:07 -05:00
Nick 4352e0a61f Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references 2020-12-03 11:28:21 -05:00
James Agnew 1eae5db374
autoCreatePlaceholderReferenceTargets true breaks multitenancy (#2215)
* Fix #2209 - autoCreatePlaceholderReferenceTargets true breaks multi-tenancy

* Add changelog

* Address fixme
2020-12-03 08:53:37 -05:00
James Agnew 35f4d48eee
Fix validating capabilitystatements (#2214)
* Fix validating capabilitystatements

* Add changelog
2020-12-03 05:31:04 -05:00
Nick Goupinets ffee7a894f Removed person refs 2020-12-02 17:41:42 -05:00
James Agnew a3ae6c3813
Add partition selector to id parameter (#2208)
* Add partition selector to id parameter

* Add changelog
2020-12-02 14:10:37 -05:00
Nick Goupinets 417ae55cb4 Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references 2020-12-02 09:29:47 -05:00
James Agnew 6e72ee8f6b
Fix new searchbuilder on oracle (#2205)
* Fix new searchbuilder on oracle

* Add changelog
2020-12-02 06:22:41 -05:00
jamesagnew 18541d4388 Correctly chunk resource version queries 2020-12-01 17:20:44 -05:00
Nick Goupinets d63c580e82 Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references 2020-12-01 13:18:42 -05:00
James Agnew c309737166
Allow reading from multiple partitions (#2198)
* Partitioning rework

* Work on partition improvements

* Partition updates

* Work on partitiong

* Test fixes

* Add docs

* Add changelog

* Resolve FIXME

* Test fixes

* Test fixes

* Test fixes

* Compile fix

* Fix compile error

* Test fix

* Test fixes
2020-11-30 17:59:52 -05:00
Nick Goupinets 3f3b811b16 Fixed Foreign Key references 2020-11-30 17:21:56 -05:00
jamesagnew 74aed5d107 License headers 2020-11-29 20:53:19 -05:00
Ken Stevens 3d3242cf9a
Resource change listener (#2191)
* init rev

* fix build

* Tweaked the POM config settings and also added some dependency exclusions (commented out for now).

* More re-factoring of the CQL Unit Tests.

* Removed a LogMessages.html file and a minor Unit Test change.

* Unit Tests.

* added debug logging to troubleshoot the dao that has no name

* added debug logging to troubleshoot the dao that has no name

* workaround to get past null dao resourceName issue

* fix jsons to get test to pass.  Test still fails with library id problem

* gitignore

* gitignore

* test passes!  Woohoo!

* undo troubleshooting logging

* added timer and logging.

* added asserts and time multiple evaluations and measure the average

* readme

* adding explanations

* added more explanatory notes

* measure 2 patients

* move pom to use cqf snapshot

* roughed out cache

* roughed out cache

* Added code to VersionChangeCache class.

* added tests

* added polling test

* wrote init version

* wrote init version

* optimized versioncache

* worked on getting tests to pass

* redesigned interfaces

* all tests pass

* fixmes

* fixmes

* rename param

* Added Unit Tests.

* javadoc

* Fixed the 2-Patient Unit Test.

* More Unit Test work.

* make ResourceVersionMap immutable

* Fixed a Unit Test that was failing intermittently by adding a new way to refresh the cache.

* Use a new method called doRefreshAllCaches(0) to force a refresh and have all Listeners called immediately.

* Cleaned up IVersionChangeListenerRegistry interface to make methods more clear and resolved all Unit Tests.

* disabled tests

* disabled tests

* removed unused test method

* fixed refresh logic and added asserts

* moved cache so it can be used by searchparamregistry

* Updated the Cql Unit Tests to be properly configured for Dstu3 or R4.

* started rewriting SearchParamRegistryImpl to use new cache
added init method to listener interface

* added fixmes

* adding tests

* tests pass

* added tests

* Fixed the way CqlProviderFactory Autowires Beans so it can work with both Dstu3 and R4 contexts.

* moar tests

* fix test

* work tests

* reverting unneccessary refactors

* undo unneccessary import changes to reduce MR size

* undo unneccessary import changes to reduce MR size

* Unit Test fixes...more to come...

* add unregister

* fix tests

* Changed ResourceVersionCache to use a Map of Maps.

* searchparam test

* test passes

* resolved fixme

* fixmies

* strengthen test asserts

* More Unit Test changes and added some FIMXME items.

* changed from long to changeresult

* renamed VersionChange -> ResourceChange

* fixed delete bug

* organize imports

* fix test

* add update test

* add test reset function

* fix stack overflow

* fix startup race condition (might still be intermittent)

* found the problem.  delete doesn't work because we can't look up the deleted resource to find out what its name is

* fixed regression

* abandoned idea of incrementally updating searchparam registry.  Rebuilding every time--it doesn't change that often.

* fix test

* begin with failing test

* test passes

* fixmes and javadoc

* fix test

* fixme

* fix test

* whack-a-mole.  Either subs pass or cql passes.  Something's fishy with the FhirContext

* fix subscription test initialization

* fix method name

* Re-factored the CqlProvider Unit Tests.

* changed ResourceChange API

* add interface

* add interface

* fix test

* add schedule test

* add doc

* init rev

* FIXME

* modify FhirContext change

* change fhirContext.getResourceTypes to lazy load

* converted subscriptions

* converted subscriptions

* begin with failing test

* test passes

* fix test

* test coverage

* test coverage

* test coverage

* test coverage

* good coverage now

* pre-review cleanup.  I think I found a bug.

* moved cache into listener entry
tests pass with fixmes

* fix test

* fix test

* fix test

* fixme

* FIXMEs

* merge cache and registry

* method reorg

* javadoc

* javadoc done.  all FIXMEs resolved.

* change log

* changes needed by cdr

* spring config cleanup

* james feedback

* james feedback

* might not work. Try moving resourcechangeconfig into searchparam config

* merge ResourceChangeListenerRegistryConfig.java into SearchParamConfig

* fix test

* fix SubscriptionLoader

* fix SubscriptionLoader

* create ResourceVersionMap from resources

* added cache handle interface

* fix test

* javadoc

* fix test

* fix test

* James feedback: clone searchparametermap

* fix startup

* fix test

* fix test

* fix intermittent

* pre-review cleanup

* FIXME

* final FIXME yay!

* Address a couple of my own reviw comments

Co-authored-by: Kevin Dougan <kevin.dougan@smilecdr.com>
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2020-11-29 19:42:40 -05:00
James Agnew 1e5def260c
Bump woodstox version (#2199) 2020-11-27 19:49:06 -05:00
Nick Goupinets 2a3b72db17 Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references 2020-11-27 16:54:04 -05:00
Nick Goupinets dc2a9e55c5 Renamed sourceResource to goldenResource 2020-11-27 16:53:47 -05:00
jamesagnew fbbba11417 Formatting only 2020-11-27 16:16:01 -05:00
IanMMarshall 722e24d80c
Merge pull request #2175 from jamesagnew/ft-fix-expend-filter-contains-issue
Fixed expand filter issue
2020-11-27 14:47:05 -05:00
ianmarshall bbba4428ee Changed name for new tokenFilter to make it unique. 2020-11-27 11:38:24 -05:00
ianmarshall be88a256d0 Changed name for new tokenFilter to make it unique. 2020-11-27 11:32:08 -05:00
Frank Tao 014e2ba9cb Rework on the expand issue replaced the EdgeAnalyzer 2020-11-26 20:37:51 -05:00
Frank Tao a511543e77 Merge branch 'master' into ft-fix-expend-filter-contains-issue
# Conflicts:
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoValueSetDstu3.java
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoValueSetR4.java
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/r5/FhirResourceDaoValueSetR5.java
#	hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/dstu3/ResourceProviderDstu3ValueSetTest.java
2020-11-26 18:47:10 -05:00
swagers cb693afe25
Changed the names URIs and IDs of a few LOINC concept maps (#2197)
Changed to match what LOINC uses for these concept maps

Co-authored-by: Steven Wagers <swagers@regenstrief.org>
2020-11-26 10:06:17 -05:00
James Agnew fb8658da70
Always apply vs filters correctly (#2195)
* Always apply valueset filters correctly

* Test fix

* Testfix

* Test fix

* Add changelog

* Test fix
2020-11-24 18:12:02 -05:00
Frank Tao 3d9e0aeac1 Added more test cases 2020-11-23 21:32:46 -05:00
Frank Tao 5a05513250 Revoked filter op to EQUAL and enabled NGramAnalyzer 2020-11-21 14:46:26 -05:00
Frank Tao 5b471602c6 Merge branch 'master' into ft-fix-expend-filter-contains-issue 2020-11-20 10:29:58 -05:00
James Agnew a01f5ae906
Fix subsumption test direction (#2183)
* Fix subsumption test direction

* Add changelog

* Test fixes
2020-11-19 21:48:54 -05:00
James Agnew 8b65db0c98
Improve error message on unique constraint violation (#2182)
* Improve error message on unique constraint violation

* Add changelog

* Test fixes

* Test fix
2020-11-19 21:20:59 -05:00
Frank Tao e551f1837e Updated based on review 2020-11-19 20:22:13 -05:00
Tadgh 953b662827 Merge branch '2161-refactor-empi' into gg_20201105-remove-person-references 2020-11-19 14:24:51 -05:00
ianmarshall d99db2dbcc Fixed NPE in package loader when package description is null. Also renamed tests that would have caught this problem sooner. 2020-11-18 22:37:35 -05:00
Frank Tao 878c22192e Added expand filter impl for R5 and dstu3, changed the filter logic 2020-11-18 22:26:21 -05:00
Frank Tao f65fdb0d52 Merge branch 'master' into ft-fix-expend-filter-contains-issue 2020-11-18 19:54:01 -05:00
Tadgh 75c0c25d7b remove references to EMPI 2020-11-18 19:50:00 -05:00
jamesagnew 0c31741eec Version bump to 5.3.0-SNAPSHOT 2020-11-18 14:52:43 -05:00
jamesagnew 4d441ad7f2 Version bump to 5.2.0 2020-11-18 06:30:20 -05:00
Tadgh 805d5b1d6c Merge branch '2161-refactor-empi' into gg_20201105-remove-person-references 2020-11-17 09:28:37 -05:00
IanMMarshall 7532313c0f
Change to not set ValueSet expansion component parameter id HibernateSearch not enabled. (#2178)
Co-authored-by: ianmarshall <ian@simpatico.ai>
2020-11-17 07:46:55 -05:00
Frank Tao 78f730c4ca Fixed expend filter issue 2020-11-15 22:39:14 -05:00
jamesagnew 1db0944243 Improve logging for terminology ingestion 2020-11-13 17:25:14 -05:00
IanMMarshall ed953d82f8
Rename index that was recently changed. (#2173)
* Restoring name of index that was changed in migration task.

* Rename TermValueSetConcept index that was recently changed.

Co-authored-by: ianmarshall <ian@simpatico.ai>
2020-11-13 14:12:25 -05:00
Tadgh f648d8ec2b renaming in personsvc 2020-11-13 09:44:15 -05:00
Nick Goupinets 2bbfb6dfaa WIP 2020-11-11 15:27:57 -05:00
Nick Goupinets b0f449ff5e MergerSvcTest WIP 2020-11-11 10:17:03 -05:00
IanMMarshall bf9e02bc16
Merge pull request #2164 from jamesagnew/im_20201029_ig_package_long_description
Truncate package descriptions that are longer than 200 characters.
2020-11-10 12:01:53 -05:00
James Agnew 63b7b379c2
Improve ValueSet filtering (#2162)
* Improve filter search

* Filter improvements

* Tests passing

* Test fixes

* Fix transaction filter

* Add changelog

* Test fix

* Update hapi-fhir-base/src/main/resources/ca/uhn/fhir/i18n/hapi-messages.properties

Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com>

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/BaseTermReadSvcImpl.java

Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com>

* Resolve FIXME

* Test fix

* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/term/ValueSetExpansionR4Test.java

Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com>

Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com>
2020-11-10 11:01:13 -05:00
ianmarshall 881193cf24 Truncate package descriptions that are longer than 200 characters. 2020-11-09 16:19:05 -05:00
jamesagnew 4f6be9d9a7 Reduce test timeout 2020-11-09 14:46:15 -05:00
Nick Goupinets 4c0fab8cec Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references 2020-11-09 09:06:50 -05:00
jamesagnew 22fe9420ac Add tests 2020-11-06 09:10:47 -05:00
Tadgh 5797cd0682 * Add source_resource_id column
* Add source_resource columm
Still need to depracate the old columns.
Reworked a Matcher to ignore Person
2020-11-05 13:07:45 -05:00
Frank Tao ce1caee9fa
Feature 2020 10 28 reverse chain (#2160)
* Added test cases for multiple '_has'

* Fixed composite search for the new SearchBuilder

* Added more test cases
2020-11-05 05:27:11 -05:00
IanMMarshall 38a975f09d
Im 20201028 fix versioned valueset expansions (#2151)
* Fixes to ValueSet expansion for cases where CodeSystem is versioned.

* Fixes to ValueSet expansion for case where URL and filter parameters specified.

* Restore maven-wrapper.properties file inadvertently deleted from GitHub.

* Fix JUnit tests and ValueSet exclude.

Co-authored-by: ianmarshall <ian@simpatico.ai>
2020-11-04 16:36:43 -05:00
James Agnew 228e75b501
Bump core to latest versions (#2154)
* Bump core to latest versions

* Compile fix

* Bump to non snapshot core library
2020-11-03 15:43:37 -05:00