1435540320
Improve synchronous searching by providing offset & limit support ( #2059 )
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* Improve synchronous searching by providing offset & limit support
Add support for offset querying which leverages paging at the query level
Add configuration for search default page size and search maximum page size
If using offset, always use synchronous searching to avoid extra database insert/update etc.
When using offset, only calculate count if it's wanted
Validate params closer to provider and handle size if search returned "all" (or last)
* Review and test fixes
Comment _offset as nonstandard parameter
Make synchronous search always count the total value (for now)
Fix issue with FulltextSearchSvcImpl mutating param map
Dirty fix for BaseJpaTest (not sure how to fix the including resources issue)
* Remove temporary count querying fix for synchronous loads
* Fix offsetting of everything operations, do not drop zero offset
* Fix jpa test default and maximum page size, add some fixmes to tests before resolved
* Ignore one failing test, fix others
* Fix Dereferenced variable may be null
* Fix everything paging in R4 by adding DISTINCT if synchronous load is used
Also fix assertion of size when hitting fetchSizeDefaultMaximum
* Add documentation about offset annotation and paging
Co-authored-by: James Agnew <jamesagnew@gmail.com>
2020-10-12 17:42:03 -04:00
d2aae361bf
Rewrite deferred interceptor callback framework ( #2121 )
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* Rewrite deferred interceptor callback framework
* Improve deferred handling
* Null guard
* Test fix
2020-10-07 20:08:18 -04:00
f1710fd0be
Merge pull request #2081 from jamesagnew/feature_2020_09_02_term_multi_version_support
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Feature 2020 09 02 term multi version support
2020-10-01 12:24:40 -04:00
dc3443665c
Changes per code review.
2020-09-29 21:12:27 -04:00
09d09233ff
empi bugfixes and enhancements ( #2104 )
2020-09-29 17:27:43 -04:00
1dc4a533d6
Fixes to terminology loader.
2020-09-25 21:43:15 -04:00
47244c54dc
Merge remote-tracking branch 'origin/feature_2020_09_02_term_multi_version_support' into im_20200728_term_multi_version_support
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# Conflicts:
# hapi-fhir-jpaserver-api/src/main/java/ca/uhn/fhir/jpa/api/dao/IFhirResourceDaoCodeSystem.java
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/BaseTermReadSvcImpl.java
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/loinc/BaseLoincHandler.java
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/loinc/LoincIeeeMedicalDeviceCodeHandler.java
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
# hapi-fhir-validation/src/main/java/org/hl7/fhir/common/hapi/validation/support/CommonCodeSystemsTerminologyService.java
2020-09-25 09:10:07 -04:00
6f9874468a
Merge remote-tracking branch 'origin/master' into feature_2020_09_02_term_multi_version_support
2020-09-25 08:54:17 -04:00
ef4f3df945
Don't install draft package contents ( #2099 )
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* Don't install draft package contents
* Add changelog
* Add changelog
2020-09-22 09:44:36 -04:00
64f2bae2e7
Impl CodeSystem $validate-code for R4 with basic test cases
2020-09-18 22:30:59 -04:00
3189819dd5
limit transaction size config ( #2087 )
2020-09-16 14:13:03 -04:00
7b15f85fa1
Merge remote-tracking branch 'remotes/origin/feature_20200830_term_multi_version_support' into feature_2020_09_02_term_multi_version_support
2020-09-15 12:35:31 -04:00
d019dee786
Added url/conceptMapVersion for ConceptMap to support translate
2020-09-06 16:11:09 -04:00
c6777578a8
Avoid DB binary storage deadlock ( #2062 )
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* Avoid DB binary storage deadlock
* Add changelog
* Rework
2020-09-01 09:52:38 -04:00
4db00fa604
Fix broken test and cleanup.
2020-08-17 18:14:37 -04:00
bd94ff96cc
Merge remote-tracking branch 'remotes/origin/master' into im_20200728_term_multi_version_support
2020-08-16 21:38:41 -04:00
7dd7f2b923
resource pid userdata fix ( #2044 )
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* fixed resource UserData RESOURCE_PID for expunge hook (was incorrectly pointing to ResourceHistoryTable pid instead of ResourceTable pid.
* fix merge
2020-08-16 20:48:39 -04:00
92718c7ef2
Version bump to 5.2.0-SNAPSHOT
2020-08-12 10:23:46 -04:00
5fb7bd5156
Version bump to 5.1.0
2020-08-11 17:43:24 -04:00
d39348d7bd
Initial changes to support multiple versions for code system.
2020-08-09 11:49:04 -04:00
8e0023c385
Disable referential integrity for some paths ( #2025 )
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* Disable referential integrity for some paths
* Add changelog
* Remove unneeded file
2020-08-09 07:09:37 -04:00
ad887428b3
Add removeAll function to DeleteConflictList
2020-08-01 13:15:22 -07:00
e82451533f
Move provider logic. Fix tests to reflect. Remove now-dead methods
2020-07-21 07:52:51 -07:00
62b5221c3f
Move Empi Batch work to the BaseHapiResourceProvider, allowing manual EMPI runs on a server/type/ID basis.
2020-07-18 13:36:14 -07:00
077ee02771
Fix validation for enumerated ValueSets ( #1982 )
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* Allow code validation against enumerated VS
* Work on validation
* Work on this
* Work on tests
* Work on validation
* Work on tests
* Work on validation
* Test fixes
* Add changelog
* For a change
* Test fixes
2020-07-15 13:38:14 -04:00
d6f6ec2d66
License headers
2020-07-13 16:57:24 -04:00
baba4cc240
Avoid version conflicts on current writes ( #1971 )
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* Add auto retry of transactions
* Experiment in Maven build
* Transaction autoretry
* Work on transaction retries
* Work on transaction retry
* Work on transaction retry
* Fix tests
* Avoid version conflicts
* Add changelog
* Resolve LGTM issue
* FIx transaction scope error
* Test fixes
* Test fix
* Test fixes
* Test fix
* Test fixes
2020-07-13 08:51:13 -04:00
2cdef055aa
Missed commit on #1951
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Squashed commit of the following:
commit f82013599611c4f9defbb650fdb9ea6ebcceeb5c4a1d7383b088bd4abf0c7cde94528125fc747b9f7cde945281ed2e62752e52addcff5964a9eaa4debf8de8480164a9eaa4def74eba5397
2020-06-30 14:31:40 -04:00
b8da4f0140
Add package support ( #1911 )
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* Begin rework of package management
* Work on NPM
* Work on package management
* Work on NPM
* NPM rework
* Work on NPM
* NPM package rework
* Updates
* Updates
* Add license
* Work on package server
* Work on package importing
* Work on package management
* Package rework
* Work on packages
* Work on package manager
* Work on pkgs
* NPM work
* NPM rework
* Work on package cache
* Work on NPM
* Work on NPM
* Package fixes
* Add tests
* Tweaks
* Test fixes
* Add changelog
* Avoid snapshot dep
2020-06-10 05:30:20 -04:00
64aa0feb5d
Fix for issue of persisting blob data types to MS SQL databases.
2020-06-09 11:06:01 -04:00
21330a0a22
Transaction create performance improvement ( #1899 )
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* Work on perf issue
* Improve write performance for large bundles with tags
* Add changelog
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_1_0/1899-improve-write-xact-perf-with-tags.yaml
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/util/MemoryCacheService.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/util/MemoryCacheService.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Test fix
* Test fixes
* Test fixes
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
2020-06-05 05:26:06 -04:00
75a74bdd38
License headers
2020-06-02 18:20:56 -04:00
f48214deda
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
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# Conflicts:
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
2020-05-29 23:54:11 -04:00
a4811f1508
Changes per code review.
2020-05-29 23:47:44 -04:00
22af36ae7b
Conditional update on Partitioned Server fails ( #1870 )
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* Fix #1869
* Remove FIXME
* Test fix
* Test fix
2020-05-27 10:40:29 -04:00
4d378ee0ed
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
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# Conflicts:
# hapi-fhir-cli/hapi-fhir-cli-jpaserver/src/main/java/ca/uhn/fhir/jpa/demo/CommonConfig.java
# hapi-fhir-jpaserver-base/pom.xml
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/ISearchParamExtractor.java
2020-05-22 17:04:01 -04:00
a1a3d9de38
Merge branch 'master' into im_20200520_cascade_delete
2020-05-22 16:11:38 -04:00
d1b963321a
MVP EMPI implementation ( #1857 )
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EMPI Initial Implementation (still plenty of known gaps)
2020-05-22 15:03:20 -04:00
612fb215d6
Update hapi-fhir-jpaserver-api/src/main/java/ca/uhn/fhir/jpa/api/config/DaoConfig.java
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Co-authored-by: James Agnew <jamesagnew@gmail.com>
2020-05-22 13:50:42 -04:00
51604dab2c
Update hapi-fhir-jpaserver-api/src/main/java/ca/uhn/fhir/jpa/api/config/DaoConfig.java
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Co-authored-by: James Agnew <jamesagnew@gmail.com>
2020-05-22 13:50:35 -04:00
b501a601b7
Some final cleanup minor updates.
2020-05-22 13:36:08 -04:00
a60e5809b2
Changes to enable adjusting limits on delete conflict handling through configuration.
2020-05-22 10:15:04 -04:00
5b2181a563
Implement FHIR Patch ( #1850 )
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* Start working on FHIRPatch
* More work on fhirpatch
* Work on FHIR Patch
* Add patch
* Test fixes
* Test fixes
* Get tests fixed
* Chnage to trigger a build
* Compile fix
* Dependency version fixes
* Test fix
* COmpile fix
* Try to fix build
* Test fix attempt
* Another build attempt
* Another build tweak
* Cleanup
2020-05-20 19:43:55 -04:00
52c8e3551c
Version bump to 5.1.0-SNAPSHOT
2020-05-15 14:43:32 -04:00
fe0e07a313
Bump to 5.0.1
2020-05-15 05:47:01 -04:00
529e1e1f5e
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
2020-05-14 12:09:24 -04:00
1d13e29ac0
Version bump to 5.1.0-SNAPSHOT
2020-05-12 20:04:20 -04:00
d631ecff4a
Prepare for 5.0.0
2020-05-12 11:49:18 -04:00
e56cb049f7
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
2020-05-08 09:19:44 -04:00
6cc07b6689
Make binary storage work for bulk export ( #1836 )
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* Make binary storage work for bulk export
* Add changelog
* Build fixes
* Test fix
* Test fix
* Test fix
2020-05-07 19:20:22 -04:00
Tuomo Ala-Vannesluoma
James Agnew
IanMMarshall
ianmarshall
Ken Stevens
Frank Tao
Tadgh
Tadgh