Commit Graph

95 Commits

Author SHA1 Message Date
Ken Stevens 259426b0dd Merge remote-tracking branch 'remotes/origin/master' into ja_20190822_1440_infinispan_query_cache
# Conflicts:
#	hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
#	src/changes/changes.xml
2019-08-28 10:37:17 -04:00
Diederik Muylwyk 890555a77d Incremental work on large ValueSet expansion support; transaction boundaries need to be broken up. 2019-08-23 11:46:32 -04:00
James Agnew 6fa27934a8 Tests all seem to be working 2019-08-23 10:14:13 -04:00
James Agnew 9428430822
Add support for Resource.meta.source (#1438)
* Work on indexing source

* Work on tests

* Refactor query count tests

* Unit test fixes

* Add some tests

* DAO fix

* Fix compile error

* Unit test fix

* Cleanup

* Test fix

* Fix compile error

* One more test fix
2019-08-21 11:17:43 -04:00
jamesagnew e1b43d811f Version bump to 4.1.0-SNAPSHOT 2019-08-14 14:06:06 -04:00
jamesagnew 3f22456b0f Bump version to 4.0.0 2019-08-14 11:06:26 -04:00
Ruslan_Zinovyev a839a645db Skip ModifyColumn migration tasks for columns that don't exist 2019-08-12 17:19:25 -04:00
Ken Stevens af9fc882c1 fix log message 2019-08-01 19:11:06 -04:00
Ken Stevens f05d212a40 Fixed a data migration error KHS & DM 2019-08-01 17:22:18 -04:00
Diederik Muylwyk 8475aa4cc8 Add TRM_CODESYSTEM_VER.CS_DISPLAY to migration tool. 2019-08-01 14:44:03 -04:00
Diederik Muylwyk 78842164fd Addressing review comments. 2019-08-01 13:37:46 -04:00
Diederik Muylwyk a8489f4331 Added TRM_VALUESET.EXPANSION_STATUS column, index, fields to entity, and migration tasks. 2019-07-29 19:30:46 -04:00
James Agnew 7e3d062d15
Switch default client to JSON (#1392)
* Start work on changing over

* Update tests

* More test fixes

* Work on generalizing binary access provider a bit

* Add expunge capability to binary storage, and also support actual binary
resources

* Work on binary provider

* Get the DB bound binary storage service working

* Test fixes

* Compile fix

* Fix compile error

* Test fix

* Test tweak

* Trying to figure out an intermittent failure

* Work on tests

* More work on tests

* Another test fix
2019-07-22 21:27:10 -04:00
James Agnew 03918fe29a Add some javadoc 2019-07-19 13:42:01 -04:00
James Agnew d304a8fb6c Add a safety check to rename column task 2019-07-19 12:13:35 -04:00
James Agnew 6ff8484914 One migrator tweak 2019-07-19 10:17:42 -04:00
James Agnew f53746cd63 One more set of migrator tweaks to account for latest changes 2019-07-19 10:10:00 -04:00
James Agnew fd23190b4c Fix on drop table task 2019-07-19 09:38:13 -04:00
James Agnew cf68efb826 Add drop table task to migrator 2019-07-19 09:33:01 -04:00
James Agnew ee7cff9445 Rename a few columns to not conflict with res´rved words 2019-07-18 05:47:32 -04:00
Diederik Muylwyk 456aac5e16
Resolve "experimental implementation for storing and expanding large ValuetSets cont'd..." (#1376)
* Added experimental implementation for storing expanded ValueSets in terminology tables.

* Minor tweak to log message for consistency.

* Another minor tweak to log message for consistency.

* Renamed test.

* Initial work on ValueSetCodeAccumulator.

* Renamed addCode() to includeCode(); added excludeCode().

* Incremental work on large ValueSet expansion support; refactoring.

* Incremental work on large ValueSet expansion support; accounting for designations.

* Incremental work on large ValueSet expansion support; fixed missing designation.language in expanded ValueSets.

* Incremental work on large ValueSet expansion support; now actually populating TermConceptDesignation; added TermValueSetConceptDesignation as well.

* Missed a word.

* Tweak changelog entries.
2019-07-16 17:12:21 -04:00
James Agnew 120b93f204
Use HL7 FHIR Core Structures (#1382)
* Ongoing work on core structures suport

* Ongoing work on this merge

* Ongoing work to clean up structures

* Credit for #1179

* Address compile issues

* Latest changes

* Work on parallel execution

* Work on getting tests passing

* Add H2 to migrator

* Test fix
2019-07-14 10:16:40 -04:00
Ken Stevens 8d817b364c Merge remote-tracking branch 'remotes/origin/master' into expunge-hooks
# Conflicts:
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/expunge/ExpungeEverythingService.java
2019-07-12 13:27:11 -04:00
Diederik Muylwyk 0729e38e6e
Resolve "experimental implementation for storing expanded ValueSets in terminology tables" (#1369)
* Added experimental implementation for storing expanded ValueSets in terminology tables.

* Minor tweak to log message for consistency.

* Another minor tweak to log message for consistency.

* Renamed test.

* Addressing review comments.

* Added migration tasks.
2019-07-11 16:52:19 -04:00
jamesagnew dff2fdd3cf GET RID OF TRAILING LICENSE HEADER SPACES ONCE AND FOR ALL
YESSSSSSSSSSSSS
2019-07-05 11:19:51 -04:00
jamesagnew f160fbb36f License updates 2019-07-05 10:24:56 -04:00
James Agnew 2a6436af23 Rename columns in code mapping 2019-07-05 09:03:03 -04:00
jamesagnew b72f1c4555 Roll back derby upgrade 2019-06-08 09:27:28 -04:00
James Agnew 517b68882c Fix derby dependencies for tests 2019-06-07 11:11:25 -04:00
James Agnew 78e6a7ba6f Add suport for float type to migrator 2019-06-06 09:21:17 -04:00
James Agnew 50a8c66bf5 Version bump to 4.0.0-SNAPSHOT 2019-05-30 17:13:03 -04:00
jamesagnew 73aa53be8f Release 3.8.0 2019-05-30 16:50:04 -04:00
James Agnew c7a224c99d
Merge branch 'master' into upgrade-25-to-33 2019-05-29 21:33:02 -04:00
James Agnew 37b9e1a42c Improve validation of enableWhen questionnaires 2019-04-29 14:43:42 -04:00
James Agnew 738c2c1797
Interceptor framework refactoring (#1287)
Interceptor framework overhaul
2019-04-24 14:32:30 -04:00
James Agnew 75b6857902 Add ability to execute arbitrary SQL to migrator tool 2019-04-04 09:24:51 -04:00
jamesagnew 1311ded7de Fix compile issue 2019-02-15 14:55:25 -05:00
James Agnew 09920ad545 Reduce thread contention during tests 2019-02-15 14:18:34 -05:00
James Agnew c4dd06ad0c Make it easier to add tables with migrator tools 2019-02-15 13:27:07 -05:00
James Agnew 4a6345d7c4 Improve command chaining in migrator tool 2019-02-15 12:54:41 -05:00
James Agnew 0f8c8d18e2 Bump version to 3.8.0-SNAPSHOT 2019-02-06 20:02:28 -05:00
jamesagnew 207015c3af Version bump to 3.7.0 2019-02-05 21:36:38 -05:00
James Agnew a2d0168671 Fix handling of sequences in migrator tool 2019-01-15 11:31:18 -06:00
jamesagnew 98d93df12a License header updates 2019-01-04 16:22:15 -05:00
jamesagnew 49e418edf0 Adjust migrator to handle updated Hibernate version 2018-12-23 15:11:44 -05:00
James Agnew a0cb7edd08 Version bump a few dependencies 2018-12-22 20:13:03 -05:00
James Agnew 5824826eff Add support for booleans in the migrator 2018-12-20 10:24:17 -05:00
jamesagnew 86b3e45a32 License header updates 2018-12-18 14:08:01 -05:00
James Agnew 11b8304cb4 Fix case sensitivity issue 2018-12-13 08:31:35 -05:00
Graham, Gary 4fea74cfa2 Fix incorrectly grabbed table 2018-12-13 00:49:17 -05:00