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6825 Commits

Author SHA1 Message Date
Tadgh 4e42a59ad4 Add licenses 2020-06-10 11:52:45 -07:00
Tadgh d698ad7180 Code review comments 2020-06-10 10:46:28 -07:00
jamesagnew d521dc61cc Package fix 2020-06-10 11:59:37 -04:00
jamesagnew 7d6f8fe612 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2020-06-10 09:57:24 -04:00
jamesagnew 05df4f0827 Migration task updates 2020-06-10 09:56:49 -04:00
jamesagnew 0c100f1aca Test fixes 2020-06-10 08:09:10 -04:00
James Agnew b8da4f0140
Add package support (#1911) 
* Begin rework of package management

* Work on NPM

* Work on package management

* Work on NPM

* NPM rework

* Work on NPM

* NPM package rework

* Updates

* Updates

* Add license

* Work on package server

* Work on package importing

* Work on package management

* Package rework

* Work on packages

* Work on package manager

* Work on pkgs

* NPM work

* NPM rework

* Work on package cache

* Work on NPM

* Work on NPM

* Package fixes

* Add tests

* Tweaks

* Test fixes

* Add changelog

* Avoid snapshot dep
 2020-06-10 05:30:20 -04:00
James Agnew 0d3ad622b5
Correct Validation Performance Regression (#1895) 
* Validation performance regression

* Optimize validation

* More cleanup

* Add changelog

* Test fixes

* Build fixes
 2020-06-10 05:26:21 -04:00
Tadgh 6e43c5348c Add missing imports from import reorganization 2020-06-09 19:27:16 -07:00
Tadgh 6fc5b753e5 Readding imports 2020-06-09 19:20:43 -07:00
Tadgh c36e1d2899 More code review comments 2020-06-09 19:18:06 -07:00
Tadgh 942fc313ec Code review comments 2020-06-09 19:00:41 -07:00
Tadgh d90987368a
Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/bulk/job/JobExistsParameterValidator.java 
Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-06-09 16:29:15 -07:00
Tadgh b7cea688f6
Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/bulk/job/JobExistsParameterValidator.java 
Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-06-09 15:52:37 -07:00
Ken Stevens 7fdd0f1753 Merge remote-tracking branch 'remotes/origin/master' into spring-batch-integration 2020-06-09 15:52:54 -04:00
Ken Stevens 57f2002b84 organize imports 2020-06-09 15:49:11 -04:00
Tadgh b1d2ab7619 Add invalid parameter validator 2020-06-09 11:02:37 -07:00
IanMMarshall 926afd01f2
Merge pull request #1910 from jamesagnew/im_20200605_db_blob_mssql 
Im 20200605 db blob mssql
 2020-06-09 13:48:53 -04:00
Tadgh a25a1064f8 remove constant 2020-06-09 10:22:31 -07:00
Tadgh 4f59c38692 Remove comment 2020-06-09 10:20:41 -07:00
Tadgh 7273457ea7 Rework to read and process larger chunks 2020-06-09 09:55:10 -07:00
ianmarshall 0540c9e205 Merge remote-tracking branch 'remotes/origin/master' into im_20200605_db_blob_mssql 2020-06-09 12:43:05 -04:00
IanMMarshall 3b14407ef7
Merge pull request #1905 from jamesagnew/im_2020601_lastn_code_text_filter 
Im 2020601 lastn code text filter
 2020-06-09 12:38:28 -04:00
Tadgh 9c153527dd remove dead imports 2020-06-09 09:03:56 -07:00
ianmarshall 97e6d967e9 Improve updated JUnit test. 2020-06-09 11:52:51 -04:00
ianmarshall 1ec6a7edb6 Merge remote-tracking branch 'remotes/origin/master' into im_2020601_lastn_code_text_filter 2020-06-09 11:45:04 -04:00
ianmarshall 4bf649c09c Merge remote-tracking branch 'remotes/origin/master' into im_20200605_db_blob_mssql 2020-06-09 11:41:05 -04:00
Ken Stevens d6a5cee6ba
fix test (#1909) 2020-06-09 11:38:39 -04:00
ianmarshall 64aa0feb5d Fix for issue of persisting blob data types to MS SQL databases. 2020-06-09 11:06:01 -04:00
ianmarshall 122bd97344 Changes recommended during code review. 2020-06-09 09:59:03 -04:00
Ken Stevens 82b4864d79
Empi 57 filter out inactive person (#1903) 
* begin with failing test

* test passes

* pre-review cleanup

* little fix

* fix intermittent
 2020-06-09 09:52:40 -04:00
Tadgh 8b995f8be7 Remove dead test 2020-06-08 17:16:22 -07:00
Tadgh 278a1070ae :Merge branch 'master' into spring-batch-integration 2020-06-08 17:16:11 -07:00
Tadgh 25fa0377df tidying 2020-06-08 17:02:37 -07:00
Tadgh 864c9c2cb8 Add task executor to partition step 2020-06-08 16:35:15 -07:00
Tadgh 44aa688a20 Final config layout of Bulk Export Batch job 2020-06-08 15:59:08 -07:00
ianmarshall 3c600e06d4 Merge remote-tracking branch 'remotes/origin/master' into im_2020601_lastn_code_text_filter 2020-06-08 18:08:55 -04:00
ianmarshall c86e46b196 Add documentation and remove requirement for max parameter (defaulted to 1 now). 2020-06-08 18:08:02 -04:00
ianmarshall 30dd858f17 Add close method for Elasticsearch service. Fix the partial code match. 2020-06-08 15:07:02 -04:00
Diederik Muylwyk 954730d485
Merge pull request #1904 from jamesagnew/dm-fix-typo 
Fixed a typo in ParametersUtil.
 2020-06-08 13:55:28 -04:00
Diederik Muylwyk eda806babd Fix typo. 2020-06-08 13:48:44 -04:00
ianmarshall 4982e67a0f Merge remote-tracking branch 'remotes/origin/master' into im_2020601_lastn_code_text_filter 2020-06-08 09:26:55 -04:00
ianmarshall 56cbc5149b Add support for partial code description matching. 2020-06-08 09:24:09 -04:00
Tadgh 4405e50db9 wip 2020-06-05 15:53:06 -07:00
Ken Stevens dd84846b94
Empi 56 link merged person (#1902) 2020-06-05 15:50:50 -04:00
Ken Stevens 558f419955
Empi 54 not duplicate (#1900) 
add operation to unduplicate persons
 2020-06-05 12:21:09 -04:00
jamesagnew 5483c99e00 License header updates 2020-06-05 05:47:20 -04:00
James Agnew 21330a0a22
Transaction create performance improvement (#1899) 
* Work on perf issue

* Improve write performance for large bundles with tags

* Add changelog

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_1_0/1899-improve-write-xact-perf-with-tags.yaml

Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/util/MemoryCacheService.java

Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/util/MemoryCacheService.java

Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>

* Test fix

* Test fixes

* Test fixes

Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
 2020-06-05 05:26:06 -04:00
Tadgh 7ed65b0080 partially done writer, working out size-based chunking 2020-06-04 20:58:06 -07:00
ianmarshall 549993886d Fix merge conflicts. 2020-06-04 17:57:38 -04:00