0acfc51082
Split test into two tests, one of which passes, one of which fails, showing the missing functionality
2020-03-05 16:38:42 -08:00
58ee76549c
Merge branch 'master' into ja_20200206_multitenancy
2020-03-04 08:19:22 -05:00
9b37ba35d0
Merge pull request #1747 from jamesagnew/ks-20200303-bulk-export-filter
...
fixed a copy/paste error in bulk export with test
2020-03-03 19:54:26 -05:00
e819d40414
fix near searching for R4
2020-03-03 18:33:19 -05:00
a510543933
Fix log conditional
2020-03-03 14:03:55 -08:00
df7a9916c3
Swap from trace to info logging
2020-03-03 14:01:12 -08:00
d104fbdf7d
fixed a copy/paste error in bulk export with test
2020-03-03 16:40:31 -05:00
705735b9c0
review feedback: javadoc
2020-03-03 13:29:10 -05:00
5b5ef08500
Merge remote-tracking branch 'remotes/origin/master' into ks-20200302-near-chain
2020-03-03 09:44:52 -05:00
4a160a2df3
Merge branch 'master' into ja_20200206_multitenancy
2020-03-03 09:25:19 -05:00
58b5bd9664
Limit type on _has query ( #1743 )
...
* Limit type on _has query
* Add changelog
2020-03-03 08:28:38 -05:00
3c2c1dab2e
Error on missing profile validation ( #1742 )
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* Error on missing profile validation
* Add changelog
* Test fixes
2020-03-03 08:28:26 -05:00
a56df03055
restrict near-distance extraction to DSTU3
2020-03-02 21:50:57 -05:00
4e1be80525
fixme
2020-03-02 21:39:28 -05:00
d1b54a9668
pre-review cleanup
2020-03-02 21:32:27 -05:00
27dcafe4f2
all but unit tests
2020-03-02 21:27:50 -05:00
24acb57f3b
began with failing test.
...
test now passes.
2020-03-02 17:56:25 -05:00
8d9119faef
Rework span name
2020-03-02 14:37:09 -08:00
6123e4b189
rework based on PR comments
2020-02-28 16:31:16 -05:00
ed7b9fc6b6
Initial attempt at integrating elastic APM for search performance
2020-02-28 16:09:16 -05:00
8c78e465b1
Defer large term delta adds ( #1736 )
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* Defer large term delta adds
* Add changelog
2020-02-28 14:41:15 -05:00
5bc554949b
Remove deleted resources from cached search results ( #1732 )
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* Remove deleted resources from cached search results
* Add changelog
* Add tests
2020-02-28 10:57:26 -05:00
f86a4c9fa1
Add date ordinals to subscription matching checker
2020-02-26 17:05:23 -05:00
2dc94de6bb
roll back change to inmemory matcher test
2020-02-26 14:31:35 -05:00
077f9df814
I keep finding more tests
2020-02-26 12:04:33 -05:00
a97443b1ed
Fix test failures. One caused by invalid test. One caused by granularity need LT not LTE
2020-02-26 11:12:27 -05:00
cb9906580e
Index canonical references ( #1728 )
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* Index canonical references
* Add changelog
* Fix compile error
* Add whitespace
2020-02-25 21:45:46 -05:00
df9e86ec66
Merge branch 'master' into date-match-bug
2020-02-25 17:26:53 -05:00
b2b0ff22b4
Collapse date joins ( #1726 )
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* Collapse date joins
* Add changelog
* Address review comments
* Add whitespace
* fix test
Co-authored-by: Ken Stevens <ken.stevens@sympatico.ca>
2020-02-25 17:17:13 -05:00
2204fbeabd
Adding some comments
2020-02-25 17:08:11 -05:00
1e833af5f0
Variable reuse
2020-02-25 17:06:38 -05:00
f56e38148b
Add flag to DaoConfig controlling behaviour
2020-02-25 16:43:17 -05:00
512af5b87d
Add changelog entry
2020-02-25 14:09:51 -05:00
da7224ff89
update broken test to reflect new reality of business logic of ordinal date comparison
2020-02-25 14:07:03 -05:00
3ec772b527
rework ResourceIndexedSearchParamDate constructor to support incoming string values
2020-02-25 14:06:36 -05:00
3b41b5b960
Type migration to boxed integer to avoid int defaulting to 0
2020-02-25 11:18:39 -05:00
34d5925393
Move common work to DateUtils. Rename function for clarity.
2020-02-25 09:37:57 -05:00
7f5b3394e0
Hacky first-pass of adding ordinal date field to ResourceIndexedSearchParamDate and using it for search
2020-02-24 19:34:16 -05:00
b33ad73d46
switch subscriptionchannelfactory to autowire
2020-02-24 14:28:14 -05:00
18d859281e
Merge remote-tracking branch 'remotes/origin/master' into date-match-bug
2020-02-24 11:47:43 -05:00
41b5eb2484
Switching cdrsubscribablefactory from @ComponentScan to @Bean
2020-02-23 15:43:30 -05:00
c0811376b7
Moved TranslateRawParameters method from BaseHapiFhirResourceDao to BaseStorageDao ( #1722 )
2020-02-20 10:52:43 -05:00
6200cd2ddc
Add test asserts
2020-02-19 21:21:22 -05:00
79ad0aebb5
Add a test
2020-02-19 18:01:35 -05:00
a05c4ce9eb
Don't thrash delta links ( #1721 )
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* Don't thrash delta links
* Add changelog
* Remove commented out code
2020-02-19 17:46:54 -05:00
ab8dfa5a03
Avoid multi-term for ElasticSearch ( #1717 )
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* Avoid multi-term for ElasticSearch
* Add changelog
* Remove redundant code
2020-02-18 16:40:44 -05:00
fba28950ec
Merge pull request #1693 from jamesagnew/im_20200131_remove_circular_dependency_forcedid
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Changes to schema to loosen dependencies involving Forced ID table
2020-02-18 14:16:09 -05:00
64f07e4dc0
Includes performance enhancement ( #1702 )
...
* Includes performance enhancement
* Add changelog
* Test fix
* Fix typo
* A few coverage cleanups
* Test fix
* Fix changelog
2020-02-18 14:11:48 -05:00
f7db280099
Merge remote-tracking branch 'remotes/origin/master' into im_20200131_remove_circular_dependency_forcedid
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# Conflicts:
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
2020-02-18 12:13:00 -05:00
60f16dd91d
Update to 4.3.x core JAR ( #1715 )
...
* Added optionality for adding resource fetcher
* Added coverage that proves invocations
* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences
* Added optionality for adding resource fetcher
* Added coverage that proves invocations
* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences
* Start working on converter
* Account for compile errors
* Test fix
* Work no validator
* Work on getting core working
* Add some test coverage
* Many test fixes
Co-authored-by: Jens Kristian Villadsen <46567685+jvitrifork@users.noreply.github.com>
2020-02-17 14:28:29 -05:00
ddc7b601ee
Version bump to 4.3.0-SNAPSHOT
2020-02-16 19:23:22 -05:00
4fd80cfca7
Bump to 4.2.0
2020-02-16 19:00:15 -05:00
da11d3d89e
remove distinct from search ( #1712 )
...
* it works now
* oops
* add successful migration message
* add successful migration message
* Add fix for #1300
* Remove FIXME
* Test fix
* Test fix
Co-authored-by: James Agnew <jamesagnew@gmail.com>
2020-02-15 12:45:59 -05:00
1d1aadb813
Work on multitenancy
2020-02-09 20:57:50 -05:00
ebf395bee9
Merge branch 'master' into ja_20200206_multitenancy
2020-02-09 08:40:29 -05:00
f7ec41ffc5
Work on multitenancy
2020-02-09 08:40:15 -05:00
c5c1e3196b
Resolve FIXMEs ( #1705 )
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* Resolve FIXMEs
* Test fixes
* Test fixes
* Clean up unused code
* Add some test coverage
* Test fix
* Test fix
* Avoid intermittent
2020-02-09 08:39:46 -05:00
b2d2346228
Work on multitenancy
2020-02-07 15:18:06 -05:00
da54d3443e
fix noisy logs ( #1701 )
2020-02-04 11:29:09 -05:00
4229645602
Fix to code delta CSV encoding
2020-02-03 20:56:48 -05:00
5d4f34d67c
Intermittent test fix (yes again...)
2020-02-03 19:21:12 -05:00
26589e61c3
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2020-02-03 18:06:46 -05:00
b06105d970
Intermittent test fix
2020-02-03 18:06:29 -05:00
a31e90da2e
Merge pull request #1698 from jamesagnew/ks-20200203-remove-search-lastused
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Remove searchLastReturned column
2020-02-03 16:53:27 -05:00
d7b45ff65c
Test fix
2020-02-03 16:48:27 -05:00
2e96d6bc2d
fix test
2020-02-03 15:49:37 -05:00
3c46595e81
Merge remote-tracking branch 'remotes/origin/master' into ks-20200203-remove-search-lastused
2020-02-03 11:33:15 -05:00
b4325199cf
review feedback
2020-02-03 11:20:18 -05:00
7faf8932cf
Merge pull request #1695 from jamesagnew/ks-20200131-near-search-http
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Ks 20200131 near search http
2020-02-03 10:38:29 -05:00
709aeb4ae8
Drop unnecessary index ( #1696 )
2020-02-03 10:29:39 -05:00
cda906d7b8
Column removed. Time to run tests.
2020-02-03 09:44:10 -05:00
38eb12234d
Merge branch 'master' into ks-20200131-near-search-http
2020-02-03 05:27:50 -05:00
218f344945
Test fix working
2020-02-03 05:24:02 -05:00
9d59de14a9
Unit test fix
2020-02-03 05:24:02 -05:00
63f2f38689
reinstate near param count validation
2020-02-02 21:21:37 -05:00
decb47dfc2
remove unused block
2020-02-02 16:56:25 -05:00
ffcf617659
pre-review cleanup
2020-02-01 20:27:21 -05:00
74948737a7
pre-review cleanup
2020-02-01 20:18:42 -05:00
c375c66f15
test passes
2020-02-01 20:15:58 -05:00
fb1eb7ca8f
parking wip
2020-02-01 13:58:27 -05:00
cd617389c6
create failing test
2020-01-31 18:07:17 -05:00
868ef9590d
started writing test
2020-01-31 17:14:37 -05:00
5d5b3d7639
Changes to schema to loosen dependencies between Forced ID table and the Resource and Resource History tables.
2020-01-31 11:16:01 -05:00
f38370fbf7
Drop half-written test
2020-01-31 05:50:30 -05:00
d4295124f1
Reduce verbosity of scheduler logging
2020-01-30 16:28:56 -05:00
6985f3e5f3
Rework how IDs are calculated for quartz jobs
2020-01-30 08:49:40 -05:00
e6d3897700
Add tests
2020-01-30 08:49:40 -05:00
578f2b7aef
License header updates
2020-01-30 05:26:10 -05:00
2545fc6e3d
Merge remote-tracking branch 'remotes/origin/master' into ks-20200120-near-search
...
# Conflicts:
# hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/4_2_0/changes.yaml
2020-01-29 17:06:02 -05:00
a6f3ee8319
Add a unit test
2020-01-29 09:35:22 -05:00
9548e74b17
Fix a test i missed
2020-01-28 15:46:46 -05:00
471073103f
Further reduce memory usage in the terminology delta operations
2020-01-28 14:36:15 -05:00
eff4b294df
Merge remote-tracking branch 'remotes/origin/master' into ks-20200120-near-search
...
# Conflicts:
# hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/4_2_0/changes.yaml
2020-01-25 18:40:55 -05:00
ba0048aade
Resolve memory leak ( #1685 )
...
* Work on memory leak
* Work on term delta uploading
* Resolve memoery leak in terminology service
* Fix cache key
2020-01-25 17:48:26 -05:00
78ab01f00b
Change log and check in-memory search for location
2020-01-24 21:56:14 -05:00
c87f8e0f4a
tested near anti-meridian
2020-01-24 18:55:32 -05:00
72ccd76ed0
prepping for antimeridian test
2020-01-24 14:37:28 -05:00
11dc087750
code review
2020-01-24 13:08:47 -05:00
672902486a
optimize imports
2020-01-24 13:07:19 -05:00
4ba91e0797
remove getDao() from Dao
2020-01-24 13:01:58 -05:00
9b0f850cf4
remove newSearchBuilder from dao
2020-01-24 13:01:35 -05:00
16cb9a74e4
Remove newSearchBuilder() from BaseHapiFhirDao
2020-01-24 12:19:08 -05:00
b465a7b781
final cleanup
2020-01-23 19:20:51 -05:00
01bc941f5f
Optimize imports
2020-01-23 19:15:30 -05:00
e031ad203e
FIXME
2020-01-23 19:12:05 -05:00
99949629a8
FIXME
2020-01-23 18:49:09 -05:00
3e28047f78
fix tests
2020-01-23 18:27:35 -05:00
a687d7c9c1
testSearchResourceLinkWithChain is failing
2020-01-23 17:38:59 -05:00
6ca97df1c9
fix npe
2020-01-23 16:20:53 -05:00
8114419110
fix npe
2020-01-23 16:06:15 -05:00
48a71d6649
fix npe
2020-01-23 15:58:13 -05:00
d2ef5555fe
app context loads
2020-01-23 15:48:25 -05:00
ab74e66870
compiles. now to run the tests...
2020-01-23 15:43:41 -05:00
49743352a6
remove unused enum
2020-01-23 14:28:10 -05:00
c9fe68c5ab
inlined single use methods
2020-01-23 14:21:07 -05:00
e99402bd38
Almost done refactor. Just need to separate state from service.
2020-01-23 14:06:09 -05:00
4c53333539
started to refactor predicates out of SearchBuilder
2020-01-23 12:00:12 -05:00
e6f5af01ed
convert degrees to kilometers for near calculation
2020-01-22 16:55:19 -05:00
8b8088a3a2
begin with failing test
2020-01-22 15:06:39 -05:00
b07b87954d
r4 works. But distance calculation still needs to be fixed.
2020-01-22 12:00:09 -05:00
9413e8f198
r4 works. But distance calculation still needs to be fixed.
2020-01-22 11:59:03 -05:00
5da2823553
add negative test
2020-01-22 09:25:43 -05:00
6cebb56f13
testing complete. Now just need pre-review cleanup.
2020-01-21 17:06:19 -05:00
12dfac927e
moar tests
2020-01-21 16:53:20 -05:00
04b60a4a16
no distance and zero distance tested
2020-01-21 16:18:42 -05:00
992b62151b
yay box search works!
2020-01-21 16:04:34 -05:00
3cb9a9f4a2
added asserts
2020-01-21 15:45:41 -05:00
b463929c28
parse nearDistance into a special search parameter field so it's available when we're adding the near parameter
2020-01-21 15:38:25 -05:00
a961a7c022
begin with failing test
2020-01-21 14:39:00 -05:00
eca21bec3e
exact coord matching works now
2020-01-21 14:30:51 -05:00
299e1e35e1
removed coordextractor and moved to token (looks cleaner and more in line with how the other ones are parsed)
2020-01-21 11:06:40 -05:00
dd137a0a30
Coord extraction implemented
2020-01-21 10:17:49 -05:00
c0e929dacb
Copy identifiers to placeholder resources ( #1675 )
...
* Copy identifiers to placeholder resources
* Add tests
* Maven cleanup
* Still messing around with azure
* Adding to logging
* More azure work
* One more attempt
* More messing around with azure
* Test fix
* Another caching attempt
* More work on azure pipeline
* Fix pipeline file
* Keep working on pipeline
* More work on azure
* More azure
* More azure work
* More azure
2020-01-21 06:09:06 +09:00
63c310c168
Make a constant public
2020-01-17 13:16:23 +08:00
aad5a30a3d
Support count=0 ( #1670 )
...
* Support count=0
* Fix LGTM issue
2020-01-15 14:52:32 +08:00
201ec34db4
Fix expunge issue when no tags present ( #1671 )
...
* Fix expunge issue when no tags present
* Add changelog
* Try to clean up POMs that are failing CI
* Rework dependencies
* Roll back change that did not work
2020-01-15 14:47:22 +08:00
1390ea3c06
Update FHIR R5 structures to 4.2.0 version ( #1665 )
...
* Work on upgrading core
* Work on R5 updates
* Work on core updates
* Test fix
* Update model version properties file for R5
* Bump core version
* Test fixes
* Add 4.2.0-SNAPSHOT version to versions page in docs
2020-01-14 10:27:01 +08:00
a19d246432
License header version bump, and add the ability for "add column"
...
migration tasks to fail gracefully
2020-01-12 11:01:21 +08:00
b30de00ea1
Add parser stress test
2020-01-08 09:12:17 -05:00
1720144cfb
Test fix
2020-01-08 05:39:44 -05:00
49ed374d2f
Remove test code that accudentally got committed
2020-01-06 14:26:30 -05:00
23ca94d3c5
Add example interceptor
2020-01-06 14:26:03 -05:00
e42acef66b
Test fix
2020-01-03 14:23:19 -05:00
ca3b4297e1
FIx #1649 - Account for LOINC file format changes in 2.67
2020-01-03 14:19:22 -05:00
5cfc75eac2
Test fixes
2019-12-25 13:05:33 -05:00
536f46c89e
Test fix
2019-12-21 12:24:15 -05:00
a3ac893635
Merge branch 'master' into master
2019-12-21 11:32:45 -05:00
5187ddf7a2
One more fix
2019-12-19 15:21:12 -05:00
ec4d7d1e99
Log a message if subscriptions are disabled on the server.
2019-12-18 15:18:16 -05:00
f9b8567a3a
Fix compile error
2019-12-17 19:28:07 -05:00
Tadgh
James Agnew
Ken Stevens
Gary Graham
j-chan
IanMMarshall
ianmarshall