honeymoose
/
hapi-fhir
mirror of https://github.com/hapifhir/hapi-fhir.git
1
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity
6,140 Commits 683 Branches 130 Tags 1.2 GiB
Commit Graph

308 Commits

Author SHA1 Message Date
James Agnew 120b93f204
Use HL7 FHIR Core Structures (#1382) 
* Ongoing work on core structures suport

* Ongoing work on this merge

* Ongoing work to clean up structures

* Credit for #1179

* Address compile issues

* Latest changes

* Work on parallel execution

* Work on getting tests passing

* Add H2 to migrator

* Test fix
 2019-07-14 10:16:40 -04:00
James Agnew 6e20b53979 Fix a crash in R4 validation 2019-07-04 16:27:04 -04:00
James Agnew 10d969c514
Add Consent Service (#1359) 
* Initial consent svc

* Ongoing consent svc work

* Add docs

* Ongoing consent service work

* Work on consent service

* More work on consent svc

* License header updates

* Ongoing consent svc work

* Some test fixes

* Some test fixes

* More work on consent svc

* Tests working

* Test fix

* Propagate RequestDetails to everything in JPA server

* More interceptor tweaks

* Fix compile error

* One more tweak to captured SQL

* Ongoing interceptor tweaks

* Ongoing interceptor tweaks

* More interceptor tweaks

* Interceptor tweaks

* Tweaks to tests

* Fix tests

* Test fix

* Raise warnings when encoding extensions with missing values

* Consent service work

* More interceptor tweaks

* Consent interceptor tweaks

* Add logging to test
 2019-06-27 16:35:29 -04:00
Stig Rohde Døssing b56f59542a Move JettyUtil to new module 2019-06-14 18:34:45 -04:00
Stig Rohde Døssing aab7bb6b64 Issue-1325: Let OS assign random ports to servers during testing, and let tests get the port of the running server once the OS has assigned a port. Delete PortUtil and similar utilities. 2019-06-14 18:34:45 -04:00
James Agnew 50a8c66bf5 Version bump to 4.0.0-SNAPSHOT 2019-05-30 17:13:03 -04:00
jamesagnew 73aa53be8f Release 3.8.0 2019-05-30 16:50:04 -04:00
James Agnew c2d4891434 Test fix 2019-05-29 21:13:52 -04:00
James Agnew 772d31dc6c
Merge pull request #1228 from eevaturkka/enablewhen_master 
QuestionnaireResponses should be able to have Items without Answers in disabled Questions
 2019-05-29 20:47:31 -04:00
Matti Uusitalo 225916a4b6 Changes requested in Pull Request review 2019-05-23 16:48:49 +03:00
James Agnew d4d3178621 A couple of test fixes 2019-05-11 15:04:44 -04:00
James Agnew 444730373b Fix an NPE in validation 2019-05-10 12:49:34 -04:00
James Agnew 92bd2c7173 Fix regression in validator when validating codesystems explicitly 
defined in the JPA database
 2019-05-10 12:08:40 -04:00
James Agnew 6b37525f2d
Clean up redundant dependencies (#1306) 
* Remove a bunch of unneedd deps

* Test fix

* Disable useless test
 2019-05-09 12:51:13 -04:00
James Agnew 61902da527 Tweak to validator 2019-05-06 10:18:55 -04:00
James Agnew 7753ba2e5c Several test fixes 2019-05-04 14:38:37 -04:00
James Agnew 5132f1f4ed COnfirm validation support comntains codesystem 2019-05-02 07:50:59 -04:00
James Agnew 37b9e1a42c Improve validation of enableWhen questionnaires 2019-04-29 14:43:42 -04:00
Matti Uusitalo b95b4cf110 Merge with master 2019-04-25 10:44:07 +03:00
James Agnew 738c2c1797
Interceptor framework refactoring (#1287) 
Interceptor framework overhaul
 2019-04-24 14:32:30 -04:00
James Agnew 210d99d121 Correct validation of questionnaire enableWhen 2019-04-17 16:50:37 -04:00
patrick-werner 41a032ae9f added more missing methods 2019-03-30 15:36:06 +01:00
patrick-werner 2f3ac9d734 added missing method 2019-03-30 15:21:01 +01:00
Matti Uusitalo 5e0996d8ff Better method comment 2019-03-05 12:00:56 +02:00
Matti Uusitalo 9549a1615c Merge with origin/master 2019-03-05 11:44:30 +02:00
James Agnew 48c10bddc5
Narrative Generator refactoring (#1219) 
* Starting work on this

* Working on narrative templates

* Work on new narrative system

* Account for some failing tests due to refactoring of narrative mode

* Another test fix

* More test fixes

* One more test fix

* Work on searches

* Address review comments
 2019-02-27 14:59:57 -05:00
James Agnew 0f8c8d18e2 Bump version to 3.8.0-SNAPSHOT 2019-02-06 20:02:28 -05:00
jamesagnew 207015c3af Version bump to 3.7.0 2019-02-05 21:36:38 -05:00
James Agnew 9a8e3245b8 Build fixes 2019-02-05 15:00:36 -05:00
James Agnew 47123196a0 Merge branch 'master' of https://github.com/eevaturkka/hapi-fhir into eevaturkka-master 2019-02-05 14:26:41 -05:00
Eeva Turkka be746854e5 version number for release 2019-01-31 15:42:37 +02:00
Eeva Turkka 1c9f7f7ca9 Version number changed for build 2019-01-31 13:26:13 +02:00
Eeva Turkka 7e7d4d8879 Allowing items without answers even if item is disabled. 2019-01-31 13:00:41 +02:00
Eeva Turkka e6df4a21e4 Merge branch 'enablewhen_fix' of https://github.com/eevaturkka/hapi-fhir into enablewhen_fix 2019-01-28 10:31:44 +02:00
James Agnew 4f16fea580 Fix compile error 2018-12-28 12:11:19 -05:00
James Agnew 14a132a937 Squashed commit of the following: 
commit 9659655830
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Dec 27 17:54:25 2018 -0500

    Finish sync

commit 70da25b76f
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Dec 27 10:32:51 2018 -0500

    Work on RI4 sync
 2018-12-27 17:58:47 -05:00
James Agnew a0cb7edd08 Version bump a few dependencies 2018-12-22 20:13:03 -05:00
Ken Stevens 84a34eb3c9
Subscription module support (#1147) 
* Reorganizing packages and dependencies to support standalone subscription running within a CDR container where all hapi modules are on the classpath.

Moved Subscription registry out of interceptor and introduced SubscriptionLoader

* Created ActiveSubscription and moved cache bits into it

* Moved ExecutorQueue stuff out into its own class

* Add test and supporting code to validate SubscriptionConstants.EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION behaviour

* Added SubscriptionCheckingSubscriber

* Moved a few beans to @ComponentScan

* Replaced use of beanFactory with concrete factory classes

* Switched test to use subscribablechannel

* Added SubscriptionLoaderFhirClientTest

* Confirm that our SubscriptionProviderFhirClient works with a live fhir client

* Register interceptors with DaoConfig instead of RestServer.
Also, Rename @VisibleForTesting methods with ForUnitTest

* Fix triggering service so it uses new subscriptionmatcherinterceptor

* Renamed "Database" classes to "Dao"

* processing -> matching naming change
 2018-12-18 13:09:06 -05:00
Matti Uusitalo a3e7f5b18f Corrected group ids back to ca.uhn.hapi.fhir 2018-12-18 11:21:29 +02:00
Matti Uusitalo 01eb7faf66 Deleted unnecessary Inteface class 2018-12-18 10:15:47 +02:00
Matti Uusitalo 98f929997b Sync with upstream/master 2018-12-17 15:38:05 +02:00
Matti Uusitalo 7ad45308e0 Make this configurable 2018-12-17 14:10:15 +02:00
Matti Uusitalo 89e3cac0e2 Corrected problems caused by merge 2018-12-17 13:55:15 +02:00
Matti Uusitalo 8183c18406 Corrected project dependency version numberts 2018-12-17 13:54:43 +02:00
Matti Uusitalo 58959eec48 Do not force enableWhen to have system 2018-12-17 13:31:07 +02:00
Matti Uusitalo dd8e027ff4 Don't evaluate Extensions when determining type of answer 2018-12-17 13:31:07 +02:00
Matti Uusitalo a1f79a2063 Filter Extensions from enablewhen evaluation 2018-12-17 13:31:07 +02:00
Matti Uusitalo 755eaa5f25 bumped version n. for release 2018-12-17 13:31:07 +02:00
Matti Uusitalo c2b3d48afe Support required questionnaireitem groups 2018-12-17 13:31:07 +02:00
Matti Uusitalo a0db7e20b6 temporarily set hard coded error when no profile found 2018-12-17 13:30:36 +02:00
Matti Uusitalo cefacdc18c Returned to original state as the experiment failed 2018-12-17 13:30:36 +02:00
Matti Uusitalo 24ebe6cf03 Temporarily set isNoTerminologyServer() return true to avoid errors about loinc codes 2018-12-17 13:30:36 +02:00
Matti Uusitalo 311d92f276 Added more information to the error message about misplaced QuestionnaireResponseItem 2018-12-17 13:30:36 +02:00
Eeva Turkka 076d18977d Added support for Quantity in the default enable when evaluator 2018-12-17 13:30:36 +02:00
Matti Uusitalo b29e8d987c Avoid infinite loop when validating misaligned questionnaireresponseitems 2018-12-17 13:27:27 +02:00
Matti Uusitalo a9c625365d Added missing propagation of QuestionnaireResponse root element 2018-12-17 13:27:27 +02:00
Matti Uusitalo ab484c9819 Thread questionnaireResponse root element through questionnaire validation so implementations of enablewhen may validate against the complete resource 2018-12-17 13:27:27 +02:00
Matti Uusitalo 10fe878540 Changed versions to use fi.kela.kanta.phr parent 2018-12-17 13:27:27 +02:00
Matti Uusitalo e84689b167 Way to inject custom enablewhen evaluator added 2018-12-17 13:27:27 +02:00
Matti Uusitalo 507c78320c Added check for answering questions which are not enabled 2018-12-17 13:27:27 +02:00
Matti Uusitalo d2c6a98c24 Removed unused HapiWorkerContext 2018-12-17 13:27:27 +02:00
Okko Kauhanen a12f5892e2 Added operator evaluation for R4 enableWhen 2018-12-17 13:26:31 +02:00
Eeva Turkka 69d9e5d2b2 Unit tests up to date and maybe we need to use r4 path 2018-12-17 13:15:43 +02:00
Eeva Turkka 84c02d2e79 Cherry picked changes from master to 3.5.0 branch 2018-12-17 13:13:38 +02:00
Matti Uusitalo 3c56640d57 Do not force enableWhen to have system 2018-12-17 12:48:53 +02:00
Matti Uusitalo 73e85ce668 Don't evaluate Extensions when determining type of answer 2018-12-17 12:48:53 +02:00
Matti Uusitalo 14b5d88530 Filter Extensions from enablewhen evaluation 2018-12-17 12:48:53 +02:00
Matti Uusitalo 4956c9c7e0 bumped version n. for release 2018-12-17 12:48:53 +02:00
Matti Uusitalo c04a172fcd Support required questionnaireitem groups 2018-12-17 12:48:53 +02:00
Matti Uusitalo e13bc28b42 temporarily set hard coded error when no profile found 2018-12-17 12:45:51 +02:00
Matti Uusitalo 3f21bfb560 Returned to original state as the experiment failed 2018-12-17 12:45:51 +02:00
Matti Uusitalo 154a1d92e0 Temporarily set isNoTerminologyServer() return true to avoid errors about loinc codes 2018-12-17 12:45:51 +02:00
Matti Uusitalo c86ae90c4d Added more information to the error message about misplaced QuestionnaireResponseItem 2018-12-17 12:45:51 +02:00
Eeva Turkka 074e812162 Added support for Quantity in the default enable when evaluator 2018-12-17 12:45:51 +02:00
Matti Uusitalo 94f0520982 Avoid infinite loop when validating misaligned questionnaireresponseitems 2018-12-17 12:43:43 +02:00
Matti Uusitalo a6b0cb2a6e Added missing propagation of QuestionnaireResponse root element 2018-12-17 12:43:43 +02:00
Matti Uusitalo fa0b61d9b8 Thread questionnaireResponse root element through questionnaire validation so implementations of enablewhen may validate against the complete resource 2018-12-17 12:43:43 +02:00
Matti Uusitalo a981452957 Reverted to original version 2018-12-17 12:43:43 +02:00
Matti Uusitalo b7843498dc Changed versions to use fi.kela.kanta.phr parent 2018-12-17 12:43:43 +02:00
Matti Uusitalo 76eb85308c Way to inject custom enablewhen evaluator added 2018-12-17 12:43:43 +02:00
Matti Uusitalo 78ab112204 Added check for answering questions which are not enabled 2018-12-17 12:43:43 +02:00
Matti Uusitalo 16a4004f02 Removed unused HapiWorkerContext 2018-12-17 12:43:43 +02:00
Matti Uusitalo e7e039a851 Added default enablewhen behaviour to STU3 resources converted to R4 2018-12-17 12:43:43 +02:00
Okko Kauhanen 8f338c1b63 Remove unnecessary throw 2018-12-17 12:43:43 +02:00
Okko Kauhanen 4fff5ee27a Fixed bug in finding QuestionnaireResponse child items 2018-12-17 12:43:43 +02:00
Okko Kauhanen cddb6b993c Added operator evaluation for R4 enableWhen 2018-12-17 12:43:43 +02:00
Okko Kauhanen 6a83a3fb59 fix enablewhen result 2018-12-17 12:42:29 +02:00
Okko Kauhanen 275cc9556f Missing file 2018-12-17 12:42:29 +02:00
Okko Kauhanen 48db1d8770 First implementation of enableWhen evaluator 2018-12-17 12:42:29 +02:00
Eeva Turkka ad11409705 Unit tests up to date and maybe we need to use r4 path 2018-12-17 12:42:29 +02:00
Eeva Turkka 7097526f81 Cherry picked changes from master to 3.5.0 branch 2018-12-17 12:41:05 +02:00
James Agnew 46f5c18adc Prepare for 3.6.0 release 2018-12-17 12:32:33 +02:00
Matti Uusitalo b262985e21 Do not force enableWhen to have system 2018-12-13 13:29:17 +02:00
hdconradi 89ede0e524 Extension domains configuration for the fhr instance validator (#917) 
* Fix the url of the StructureDefinition extensions

http://hl7.org/fhir/tools/StructureDefinition/ -> http://hl7.org/fhir/StructureDefinition/
That makes the entry for the structuredefinition-expression superfluous.

The url behind IG_DEPENDSON_PACKAGE_EXTENSION does not point is not (yet?) valid too.

* Add ability to configure custom extension domains.

* Testing the extension domains configuration

* Fix obvious bug when determining resource name

The for loop was completely superfluous beforehand.
Either fix it as e.g. in this patch or remove it.

* small improvements and TODO's for possible NPE's

- javadoc see
- use diamond operator for generics
- remove throws clause when exception is not thrown
- add TODO's for some cases a NPE might occur.
  My knowledge of the context is not sufficient to suggest the proper
  way to solve this.
 2018-12-13 05:32:47 -05:00
Matti Uusitalo c85f4b8362 Don't evaluate Extensions when determining type of answer 2018-12-13 12:12:56 +02:00
Matti Uusitalo 82387e6902 Filter Extensions from enablewhen evaluation 2018-12-12 14:22:38 +02:00
Matti Uusitalo 3df4004539 bumped version n. for release 2018-12-11 11:17:40 +02:00
Matti Uusitalo 64f378ae78 Support required questionnaireitem groups 2018-12-10 13:58:14 +02:00
Matti Uusitalo b2e20b5c31 temporarily set hard coded error when no profile found 2018-12-10 13:57:04 +02:00
Matti Uusitalo 5a508f45b9 Returned to original state as the experiment failed 2018-12-10 13:52:38 +02:00