2883 Commits

Author SHA1 Message Date
ianmarshall
46b2fde1db Fixed tests to accommodate suggested changes from code review. 2020-10-07 11:07:34 -04:00
IanMMarshall
1bac646dc3
Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/LoadedFileDescriptors.java
Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com>
2020-10-07 11:01:54 -04:00
IanMMarshall
e24e233ec6
Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/LoadedFileDescriptors.java
Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com>
2020-10-07 11:01:47 -04:00
ianmarshall
0f39eeb0e9 Bug fix and test improvements. 2020-10-06 21:22:09 -04:00
ianmarshall
d9841e59ac Restore ability to load LOINC PartLink data from a single file for pre-2.68 versions. 2020-10-06 14:36:23 -04:00
IanMMarshall
5ec1284b8a
Apply suggestions from code review
Edits per code review.

Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com>
2020-10-05 15:14:39 -04:00
ianmarshall
2258d37283 Documentation for terminology. 2020-10-05 09:02:00 -04:00
IanMMarshall
f1710fd0be
Merge pull request #2081 from jamesagnew/feature_2020_09_02_term_multi_version_support
Feature 2020 09 02 term multi version support
2020-10-01 12:24:40 -04:00
ianmarshall
90f1981817 Updated tests for missed dstu2 code coverage. 2020-09-30 18:10:57 -04:00
ianmarshall
dc3443665c Changes per code review. 2020-09-29 21:12:27 -04:00
ianmarshall
8e7b4e8437 Changes per code review. 2020-09-29 21:05:28 -04:00
Ken Stevens
09d09233ff
empi bugfixes and enhancements (#2104) 2020-09-29 17:27:43 -04:00
IanMMarshall
c593958d2c
Apply suggestions from code review
Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com>
2020-09-29 15:16:46 -04:00
IanMMarshall
d63c15ef09
Apply suggestions from code review
Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com>
2020-09-29 14:27:57 -04:00
IanMMarshall
43c16e1737
Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/dstu3/ResourceProviderDstu3ConceptMapTest.java
Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com>
2020-09-29 14:27:03 -04:00
IanMMarshall
43b6bd38ff
Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/dstu3/ResourceProviderDstu3ConceptMapTest.java
Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com>
2020-09-29 14:26:30 -04:00
IanMMarshall
2be47b5567
Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4ConceptMapTest.java
Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com>
2020-09-29 14:18:21 -04:00
IanMMarshall
b8531e599f
Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4ConceptMapTest.java
Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com>
2020-09-29 14:18:00 -04:00
IanMMarshall
3940e7526f
Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4ConceptMapTest.java
Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com>
2020-09-29 14:17:36 -04:00
IanMMarshall
6aa1a5ec3f
Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoDstu3ConceptMapTest.java
Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com>
2020-09-29 14:17:19 -04:00
IanMMarshall
ebb3fa0ca1
Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoDstu3ConceptMapTest.java
Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com>
2020-09-29 14:16:56 -04:00
IanMMarshall
10620a8bb4
Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/provider/dstu3/BaseJpaResourceProviderCodeSystemDstu3.java
Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com>
2020-09-29 14:16:13 -04:00
ianmarshall
9d8664ccd8 Additional tests and updates. 2020-09-27 21:09:06 -04:00
ianmarshall
e86d9deaac Additional tests. 2020-09-27 17:45:15 -04:00
ianmarshall
732624bfaf Fix broken JUnit test. 2020-09-25 22:55:01 -04:00
ianmarshall
1dc4a533d6 Fixes to terminology loader. 2020-09-25 21:43:15 -04:00
ianmarshall
47244c54dc Merge remote-tracking branch 'origin/feature_2020_09_02_term_multi_version_support' into im_20200728_term_multi_version_support
# Conflicts:
#	hapi-fhir-jpaserver-api/src/main/java/ca/uhn/fhir/jpa/api/dao/IFhirResourceDaoCodeSystem.java
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/BaseTermReadSvcImpl.java
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/loinc/BaseLoincHandler.java
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/loinc/LoincIeeeMedicalDeviceCodeHandler.java
#	hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
#	hapi-fhir-validation/src/main/java/org/hl7/fhir/common/hapi/validation/support/CommonCodeSystemsTerminologyService.java
2020-09-25 09:10:07 -04:00
ianmarshall
6f9874468a Merge remote-tracking branch 'origin/master' into feature_2020_09_02_term_multi_version_support 2020-09-25 08:54:17 -04:00
ianmarshall
2bceacd9a6 Update loader to ensure that ConceptMap and ValueSet Ids are unique for each version loaded. 2020-09-25 08:51:53 -04:00
ianmarshall
5fe46be41c Validate code changes and new tests. 2020-09-24 18:51:47 -04:00
ianmarshall
e5daea17b7 Additional cleanup and migration tasks. 2020-09-23 17:17:07 -04:00
ianmarshall
dffc02a126 Missing fixes for DSTU3 and R5. 2020-09-23 16:51:18 -04:00
ianmarshall
640ee94c5c Merge remote-tracking branch 'origin/master' into im_20200728_term_multi_version_support 2020-09-23 16:43:22 -04:00
ianmarshall
ceb5ec6384 Use canonical identifiers for code systems rather than specifying version separately. 2020-09-23 16:42:29 -04:00
Frank Tao
3d3d013d72 Changed import of IdType to r5. 2020-09-23 09:19:06 -04:00
Frank Tao
b6d86dc5f2 Added fail(); in the invalid test cases 2020-09-22 20:39:20 -04:00
Frank Tao
20661c7a2b Removed unused import 2020-09-22 20:19:43 -04:00
Frank Tao
673274a966 Added invalid test cases for CodeSystem/$validate-code R3 2020-09-22 20:18:18 -04:00
ianmarshall
b32c4f01a8 Fixed lookupCode implementation in InMemoryTerminologyServerValidationSupport. 2020-09-22 18:46:16 -04:00
ianmarshall
4216cee8c6 Added and enhanced tests plus fixes arising from tests. 2020-09-22 14:44:32 -04:00
James Agnew
ef4f3df945
Don't install draft package contents (#2099)
* Don't install draft package contents

* Add changelog

* Add changelog
2020-09-22 09:44:36 -04:00
James Agnew
072e63be5a
Avoid a crash on double date chains (#2097)
* Avoid a crash on double date chains

* Add changelog

* Address coverage warning
2020-09-21 15:43:07 -04:00
ianmarshall
f9f8bf6515 Merge remote-tracking branch 'origin/master' into im_20200728_term_multi_version_support 2020-09-20 22:02:08 -04:00
ianmarshall
302bbca8fd Changes to support multi-versioning in ValueSet $expand operation. 2020-09-20 22:01:21 -04:00
Frank Tao
8f692a4776 CodeSystem/$validate-code not supported for DSTU2, DSTU3 2020-09-19 22:54:39 -04:00
Frank Tao
a3a032584b Made Transactional 2020-09-19 15:18:28 -04:00
Frank Tao
01d88a665d Added CodeSystem/$validate-code for R5 2020-09-19 14:13:07 -04:00
Frank Tao
7db9f7475b Changed fetch size to 1 for CodeSystem $validate-code 2020-09-19 12:52:18 -04:00
Frank Tao
05de0c5031 Added more test cases for R4 2020-09-19 12:36:14 -04:00
Frank Tao
64f2bae2e7 Impl CodeSystem $validate-code for R4 with basic test cases 2020-09-18 22:30:59 -04:00