James Agnew
004f42cdcc
Clean up docs
2019-09-23 15:56:02 -04:00
James Agnew
2cfa08f179
Add test case
2019-09-17 11:13:57 -04:00
James Agnew
38cf830384
Accurately reflect codesystem URL
2019-09-16 15:55:32 -04:00
Ken Stevens
7cfbf710fe
Merge remote-tracking branch 'remotes/origin/master' into ks-in-memory-date-compare
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# Conflicts:
# src/changes/changes.xml
2019-09-09 14:46:25 -04:00
James Agnew
722c7a8211
Work on GraphQL updates
2019-09-06 14:56:17 -04:00
jamesagnew
e1b43d811f
Version bump to 4.1.0-SNAPSHOT
2019-08-14 14:06:06 -04:00
jamesagnew
3f22456b0f
Bump version to 4.0.0
2019-08-14 11:06:26 -04:00
James Agnew
301a8f8432
Merge #1146 - Filter implementation ( #1220 )
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* Initial commit of _filter keyword implementation.
* - Completed all search parameter types for _filter.
- Implemented handling for _has, _id, _security, language, _profile, _security, and _tag.
* - Changes to support "ne" matching on resource ID for _filter
* Implemented language
* Commit/push before creation of pull request
* Ongoing merge work
* Ongoing merge work
* Merge master in
* Test fix
2019-08-12 11:59:33 -04:00
James Agnew
dd0cb10dbb
validate operation ignores parameter profile ( #1417 )
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* This should be working now - need to check tests
* Add a changelog and some docs
* One more test fix
* Tests should be passing
* Fix compile
* Test fixes
* Ignore outdated DSTU2 validation test
2019-08-07 15:31:59 -04:00
James Agnew
60eab3ad70
Add support for R5 resources ( #1416 )
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* Work so far on R5 support
* Add support for R5
* Docs changes
2019-08-06 17:30:31 -04:00
James Agnew
04ce9cfc1a
Add support for uploading custom terminology using the
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$upload-external-code-system operation
2019-07-30 17:30:18 -04:00
James Agnew
a4ca5374ec
Add terminology delta operations ( #1401 )
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* Start work on delta operations
* Add changelog
* Some build fixes
* Move upload terminology command to CodeSystem resource
* Updates
* Some test fixes
* Add changelog
* Some test fixes
* More test fixes
* Test fix
* Add additional tests
* Transaction boundary fixes
2019-07-29 17:46:42 -04:00
James Agnew
7831e8a0ed
Add support for $snapshot generation and validation based on snapshots
2019-07-14 16:15:56 -04:00
James Agnew
120b93f204
Use HL7 FHIR Core Structures ( #1382 )
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* Ongoing work on core structures suport
* Ongoing work on this merge
* Ongoing work to clean up structures
* Credit for #1179
* Address compile issues
* Latest changes
* Work on parallel execution
* Work on getting tests passing
* Add H2 to migrator
* Test fix
2019-07-14 10:16:40 -04:00
James Agnew
6e20b53979
Fix a crash in R4 validation
2019-07-04 16:27:04 -04:00
James Agnew
10d969c514
Add Consent Service ( #1359 )
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* Initial consent svc
* Ongoing consent svc work
* Add docs
* Ongoing consent service work
* Work on consent service
* More work on consent svc
* License header updates
* Ongoing consent svc work
* Some test fixes
* Some test fixes
* More work on consent svc
* Tests working
* Test fix
* Propagate RequestDetails to everything in JPA server
* More interceptor tweaks
* Fix compile error
* One more tweak to captured SQL
* Ongoing interceptor tweaks
* Ongoing interceptor tweaks
* More interceptor tweaks
* Interceptor tweaks
* Tweaks to tests
* Fix tests
* Test fix
* Raise warnings when encoding extensions with missing values
* Consent service work
* More interceptor tweaks
* Consent interceptor tweaks
* Add logging to test
2019-06-27 16:35:29 -04:00
Stig Rohde Døssing
b56f59542a
Move JettyUtil to new module
2019-06-14 18:34:45 -04:00
Stig Rohde Døssing
aab7bb6b64
Issue-1325: Let OS assign random ports to servers during testing, and let tests get the port of the running server once the OS has assigned a port. Delete PortUtil and similar utilities.
2019-06-14 18:34:45 -04:00
James Agnew
50a8c66bf5
Version bump to 4.0.0-SNAPSHOT
2019-05-30 17:13:03 -04:00
jamesagnew
73aa53be8f
Release 3.8.0
2019-05-30 16:50:04 -04:00
James Agnew
c2d4891434
Test fix
2019-05-29 21:13:52 -04:00
James Agnew
772d31dc6c
Merge pull request #1228 from eevaturkka/enablewhen_master
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QuestionnaireResponses should be able to have Items without Answers in disabled Questions
2019-05-29 20:47:31 -04:00
Matti Uusitalo
225916a4b6
Changes requested in Pull Request review
2019-05-23 16:48:49 +03:00
James Agnew
d4d3178621
A couple of test fixes
2019-05-11 15:04:44 -04:00
James Agnew
444730373b
Fix an NPE in validation
2019-05-10 12:49:34 -04:00
James Agnew
92bd2c7173
Fix regression in validator when validating codesystems explicitly
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defined in the JPA database
2019-05-10 12:08:40 -04:00
James Agnew
6b37525f2d
Clean up redundant dependencies ( #1306 )
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* Remove a bunch of unneedd deps
* Test fix
* Disable useless test
2019-05-09 12:51:13 -04:00
James Agnew
61902da527
Tweak to validator
2019-05-06 10:18:55 -04:00
James Agnew
7753ba2e5c
Several test fixes
2019-05-04 14:38:37 -04:00
James Agnew
5132f1f4ed
COnfirm validation support comntains codesystem
2019-05-02 07:50:59 -04:00
James Agnew
37b9e1a42c
Improve validation of enableWhen questionnaires
2019-04-29 14:43:42 -04:00
Matti Uusitalo
b95b4cf110
Merge with master
2019-04-25 10:44:07 +03:00
James Agnew
738c2c1797
Interceptor framework refactoring ( #1287 )
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Interceptor framework overhaul
2019-04-24 14:32:30 -04:00
James Agnew
210d99d121
Correct validation of questionnaire enableWhen
2019-04-17 16:50:37 -04:00
patrick-werner
41a032ae9f
added more missing methods
2019-03-30 15:36:06 +01:00
patrick-werner
2f3ac9d734
added missing method
2019-03-30 15:21:01 +01:00
Matti Uusitalo
5e0996d8ff
Better method comment
2019-03-05 12:00:56 +02:00
Matti Uusitalo
9549a1615c
Merge with origin/master
2019-03-05 11:44:30 +02:00
James Agnew
48c10bddc5
Narrative Generator refactoring ( #1219 )
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* Starting work on this
* Working on narrative templates
* Work on new narrative system
* Account for some failing tests due to refactoring of narrative mode
* Another test fix
* More test fixes
* One more test fix
* Work on searches
* Address review comments
2019-02-27 14:59:57 -05:00
James Agnew
0f8c8d18e2
Bump version to 3.8.0-SNAPSHOT
2019-02-06 20:02:28 -05:00
jamesagnew
207015c3af
Version bump to 3.7.0
2019-02-05 21:36:38 -05:00
James Agnew
9a8e3245b8
Build fixes
2019-02-05 15:00:36 -05:00
James Agnew
47123196a0
Merge branch 'master' of https://github.com/eevaturkka/hapi-fhir into eevaturkka-master
2019-02-05 14:26:41 -05:00
Eeva Turkka
be746854e5
version number for release
2019-01-31 15:42:37 +02:00
Eeva Turkka
1c9f7f7ca9
Version number changed for build
2019-01-31 13:26:13 +02:00
Eeva Turkka
7e7d4d8879
Allowing items without answers even if item is disabled.
2019-01-31 13:00:41 +02:00
Eeva Turkka
e6df4a21e4
Merge branch 'enablewhen_fix' of https://github.com/eevaturkka/hapi-fhir into enablewhen_fix
2019-01-28 10:31:44 +02:00
James Agnew
4f16fea580
Fix compile error
2018-12-28 12:11:19 -05:00
James Agnew
14a132a937
Squashed commit of the following:
...
commit 9659655830
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Dec 27 17:54:25 2018 -0500
Finish sync
commit 70da25b76f
Author: jamesagnew <jamesagnew@gmail.com>
Date: Thu Dec 27 10:32:51 2018 -0500
Work on RI4 sync
2018-12-27 17:58:47 -05:00
James Agnew
a0cb7edd08
Version bump a few dependencies
2018-12-22 20:13:03 -05:00
Ken Stevens
84a34eb3c9
Subscription module support ( #1147 )
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* Reorganizing packages and dependencies to support standalone subscription running within a CDR container where all hapi modules are on the classpath.
Moved Subscription registry out of interceptor and introduced SubscriptionLoader
* Created ActiveSubscription and moved cache bits into it
* Moved ExecutorQueue stuff out into its own class
* Add test and supporting code to validate SubscriptionConstants.EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION behaviour
* Added SubscriptionCheckingSubscriber
* Moved a few beans to @ComponentScan
* Replaced use of beanFactory with concrete factory classes
* Switched test to use subscribablechannel
* Added SubscriptionLoaderFhirClientTest
* Confirm that our SubscriptionProviderFhirClient works with a live fhir client
* Register interceptors with DaoConfig instead of RestServer.
Also, Rename @VisibleForTesting methods with ForUnitTest
* Fix triggering service so it uses new subscriptionmatcherinterceptor
* Renamed "Database" classes to "Dao"
* processing -> matching naming change
2018-12-18 13:09:06 -05:00
Matti Uusitalo
a3e7f5b18f
Corrected group ids back to ca.uhn.hapi.fhir
2018-12-18 11:21:29 +02:00
Matti Uusitalo
01eb7faf66
Deleted unnecessary Inteface class
2018-12-18 10:15:47 +02:00
Matti Uusitalo
98f929997b
Sync with upstream/master
2018-12-17 15:38:05 +02:00
Matti Uusitalo
7ad45308e0
Make this configurable
2018-12-17 14:10:15 +02:00
Matti Uusitalo
89e3cac0e2
Corrected problems caused by merge
2018-12-17 13:55:15 +02:00
Matti Uusitalo
8183c18406
Corrected project dependency version numberts
2018-12-17 13:54:43 +02:00
Matti Uusitalo
58959eec48
Do not force enableWhen to have system
2018-12-17 13:31:07 +02:00
Matti Uusitalo
dd8e027ff4
Don't evaluate Extensions when determining type of answer
2018-12-17 13:31:07 +02:00
Matti Uusitalo
a1f79a2063
Filter Extensions from enablewhen evaluation
2018-12-17 13:31:07 +02:00
Matti Uusitalo
755eaa5f25
bumped version n. for release
2018-12-17 13:31:07 +02:00
Matti Uusitalo
c2b3d48afe
Support required questionnaireitem groups
2018-12-17 13:31:07 +02:00
Matti Uusitalo
a0db7e20b6
temporarily set hard coded error when no profile found
2018-12-17 13:30:36 +02:00
Matti Uusitalo
cefacdc18c
Returned to original state as the experiment failed
2018-12-17 13:30:36 +02:00
Matti Uusitalo
24ebe6cf03
Temporarily set isNoTerminologyServer() return true to avoid errors about loinc codes
2018-12-17 13:30:36 +02:00
Matti Uusitalo
311d92f276
Added more information to the error message about misplaced QuestionnaireResponseItem
2018-12-17 13:30:36 +02:00
Eeva Turkka
076d18977d
Added support for Quantity in the default enable when evaluator
2018-12-17 13:30:36 +02:00
Matti Uusitalo
b29e8d987c
Avoid infinite loop when validating misaligned questionnaireresponseitems
2018-12-17 13:27:27 +02:00
Matti Uusitalo
a9c625365d
Added missing propagation of QuestionnaireResponse root element
2018-12-17 13:27:27 +02:00
Matti Uusitalo
ab484c9819
Thread questionnaireResponse root element through questionnaire validation so implementations of enablewhen may validate against the complete resource
2018-12-17 13:27:27 +02:00
Matti Uusitalo
10fe878540
Changed versions to use fi.kela.kanta.phr parent
2018-12-17 13:27:27 +02:00
Matti Uusitalo
e84689b167
Way to inject custom enablewhen evaluator added
2018-12-17 13:27:27 +02:00
Matti Uusitalo
507c78320c
Added check for answering questions which are not enabled
2018-12-17 13:27:27 +02:00
Matti Uusitalo
d2c6a98c24
Removed unused HapiWorkerContext
2018-12-17 13:27:27 +02:00
Okko Kauhanen
a12f5892e2
Added operator evaluation for R4 enableWhen
2018-12-17 13:26:31 +02:00
Eeva Turkka
69d9e5d2b2
Unit tests up to date and maybe we need to use r4 path
2018-12-17 13:15:43 +02:00
Eeva Turkka
84c02d2e79
Cherry picked changes from master to 3.5.0 branch
2018-12-17 13:13:38 +02:00
Matti Uusitalo
3c56640d57
Do not force enableWhen to have system
2018-12-17 12:48:53 +02:00
Matti Uusitalo
73e85ce668
Don't evaluate Extensions when determining type of answer
2018-12-17 12:48:53 +02:00
Matti Uusitalo
14b5d88530
Filter Extensions from enablewhen evaluation
2018-12-17 12:48:53 +02:00
Matti Uusitalo
4956c9c7e0
bumped version n. for release
2018-12-17 12:48:53 +02:00
Matti Uusitalo
c04a172fcd
Support required questionnaireitem groups
2018-12-17 12:48:53 +02:00
Matti Uusitalo
e13bc28b42
temporarily set hard coded error when no profile found
2018-12-17 12:45:51 +02:00
Matti Uusitalo
3f21bfb560
Returned to original state as the experiment failed
2018-12-17 12:45:51 +02:00
Matti Uusitalo
154a1d92e0
Temporarily set isNoTerminologyServer() return true to avoid errors about loinc codes
2018-12-17 12:45:51 +02:00
Matti Uusitalo
c86ae90c4d
Added more information to the error message about misplaced QuestionnaireResponseItem
2018-12-17 12:45:51 +02:00
Eeva Turkka
074e812162
Added support for Quantity in the default enable when evaluator
2018-12-17 12:45:51 +02:00
Matti Uusitalo
94f0520982
Avoid infinite loop when validating misaligned questionnaireresponseitems
2018-12-17 12:43:43 +02:00
Matti Uusitalo
a6b0cb2a6e
Added missing propagation of QuestionnaireResponse root element
2018-12-17 12:43:43 +02:00
Matti Uusitalo
fa0b61d9b8
Thread questionnaireResponse root element through questionnaire validation so implementations of enablewhen may validate against the complete resource
2018-12-17 12:43:43 +02:00
Matti Uusitalo
a981452957
Reverted to original version
2018-12-17 12:43:43 +02:00
Matti Uusitalo
b7843498dc
Changed versions to use fi.kela.kanta.phr parent
2018-12-17 12:43:43 +02:00
Matti Uusitalo
76eb85308c
Way to inject custom enablewhen evaluator added
2018-12-17 12:43:43 +02:00
Matti Uusitalo
78ab112204
Added check for answering questions which are not enabled
2018-12-17 12:43:43 +02:00
Matti Uusitalo
16a4004f02
Removed unused HapiWorkerContext
2018-12-17 12:43:43 +02:00
Matti Uusitalo
e7e039a851
Added default enablewhen behaviour to STU3 resources converted to R4
2018-12-17 12:43:43 +02:00
Okko Kauhanen
8f338c1b63
Remove unnecessary throw
2018-12-17 12:43:43 +02:00
Okko Kauhanen
4fff5ee27a
Fixed bug in finding QuestionnaireResponse child items
2018-12-17 12:43:43 +02:00
Okko Kauhanen
cddb6b993c
Added operator evaluation for R4 enableWhen
2018-12-17 12:43:43 +02:00
Okko Kauhanen
6a83a3fb59
fix enablewhen result
2018-12-17 12:42:29 +02:00