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836 Commits

Author SHA1 Message Date
James Agnew a2950324ef
Avoid SQL based transaction dupe check (#2688) 
* Avoid SQL based transaction dupe check

* Add changelog

* Test fixes

* Test fixes
 2021-05-30 20:26:36 -04:00
James Agnew 786112284b
Bump spring version (#2687) 2021-05-30 19:04:14 -04:00
James Agnew 24b3f0f30d
Enable mass ingestion mode (#2681) 
* Work on fixes

* Work on counts

* Enable mass ingestion mode

* Add changelog

* Test fix

* Test fix

* Test fixes

* Fixes

* Test fix

* Test fix
 2021-05-27 18:43:51 -04:00
James Agnew c8c596aff4
Fix date search on period with no end (#2676) 
* Add test

* Working test

* Update test

* Account for date fixes

* Add changelog

* Add setting

* Test fixes

* Test fix
 2021-05-26 21:03:53 -04:00
James Agnew 7a83c76e65
Add validation suppression mode (#2675) 
* Add validation suppression mode

* Add changelog

* Compile fix
 2021-05-26 17:41:48 -04:00
Ken Stevens af44b9c7a0
Ks 20210526 accurate total (#2677) 
* begin with failing test

* fixed

* changelog
 2021-05-26 12:20:49 -04:00
ianmarshall 1b387a5740 Add null check on code lookup result. 2021-05-24 22:14:02 -04:00
James Agnew 2c722e64c2
Add support for including qualified star syntax (#2672) 
* Add support for including qualified star syntax

* Add changelog

* Add docs

* Build fix
 2021-05-23 16:50:37 -04:00
jamesagnew ff2698d4d1 Merge branch 'rel_5_4' 2021-05-19 09:22:11 -04:00
jamesagnew bd372e4bd8 Fix changelog 2021-05-19 08:34:24 -04:00
James Agnew 2badae2097
Avoid contained resource in conditional create (#2665) 
* Work on unexpected contained resources

* Avoid contained on conditional create

* Add changelog
 2021-05-19 07:49:59 -04:00
jamesagnew b463b072c8 Test fixes 2021-05-18 21:32:13 -04:00
jamesagnew de56f440cb Version bump 2021-05-18 17:14:14 -04:00
Tadgh 22a1a05cfb Add changelog 2021-05-18 10:05:59 -04:00
James Agnew 7a50454350
Correct index init issue (#2662) 
* Correct index init issue

* Add changelog
 2021-05-17 20:31:44 -04:00
jamesagnew 926bf393d3 Merge branch 'rel_5_4' 2021-05-17 09:10:58 -04:00
James Agnew 40ecafcd31
Don't unescape plus in match URLs (#2658) 
* Don't unescape plus in match URLs

* Perf improvements

* Add changelog

* Test fix

* Work on tests

* Fixes

* Test fix
 2021-05-16 21:51:23 -04:00
James Agnew b31bb945ad
Add include clause to MSSQL forcedid table index (#2659) 
* Add include clause to MSSQL forcedid table index

* Add changelog

* Test fix

* Bump MSSQL version
 2021-05-16 19:14:51 -04:00
Tadgh 57bb11797e fix 2021-05-13 15:46:26 -04:00
Tadgh 15ea4fb555 Tidy test 2021-05-13 10:47:26 -04:00
Tadgh 3428d71023 Add toggle. Add test. Add changelog. add docs 2021-05-13 10:29:07 -04:00
Ken Stevens 316e7e0d6d
Ks 20210512 value set expansion id (#2654) 
* tested and fixed

* changelog
 2021-05-12 21:38:29 -04:00
James Agnew b64346ba1e
Add shcheduled task enablement config (#2652) 
* Add shcheduled task enablement config

* Add changelog

* Test fix

* Cleanup
 2021-05-12 14:38:30 -04:00
Tadgh d70b1866c1 Remvoe dead space 2021-05-11 10:54:14 -04:00
Tadgh 424ec2118b Add implementation. Add test. Add changelog 2021-05-11 10:31:29 -04:00
jamesagnew 5c4fcac530 Merge branch 'rel_5_4' 2021-05-11 08:40:09 -04:00
James Agnew 3015438a0c
Avoid query cache poisoning (#2647) 
* Avoid query cache poisoning

* Test fixes

* Add changelog
 2021-05-11 08:39:38 -04:00
James Agnew 26d030f93e
Add language validation (#2644) 
* Add language validation

* Add tests

* Test fix
 2021-05-10 20:09:45 -04:00
James Agnew 43631d4937
Account for NOPs in Auto-Versioned References (#2643) 
* Account for NOPs in auto-versioned references

* Add docs

* Add tests
 2021-05-08 18:09:50 -04:00
jamesagnew 176be4df16 Merge branch 'master' into rel_5_4 2021-05-07 17:44:47 -04:00
jamesagnew 0cebbf4fa8 Merge branch 'master' of github.com:hapifhir/hapi-fhir 2021-05-07 17:44:27 -04:00
jamesagnew 2068372998 Version bump 2021-05-07 17:43:54 -04:00
jamesagnew 63c4b22cd3 Undo bump 2021-05-07 17:42:50 -04:00
jamesagnew 17e41520a4 Version bump 2021-05-07 17:41:39 -04:00
James Agnew 5a9f499fbf
Resolve weakness in history operation (#2642) 
* Address DOS issue in History operation

* Work on history caching

* Add docs

* Add changelog

* Resolve test failures

* Test fixes

* Test fix

* Test fixes
 2021-05-07 12:04:59 -04:00
Tadgh cf864c2078 Merge remote-tracking branch 'origin/master' into issue-2634-increase-src-path-length 2021-05-06 09:10:48 -04:00
Ken Stevens a4856bba17
fix iBundleProvider.getResources(from,to) throwing a NPE (#2632) 
* fix iBundleProvider.getResources(from,to) throwing a NPE

* change log

* review feedback

* rename test to IT that has concurrency failures
 2021-05-05 21:50:51 -04:00
Tadgh d17ee2eb78 Add changelog 2021-05-05 16:01:29 -04:00
KevinIsAProgrammer 75c74a22db
Merge pull request #2619 from hapifhir/2590_preserve_the_ID_value_of_the_resources_in_the_package_loader 
2590 preserve the id value of the resources in the package loader
 2021-05-03 15:39:14 -04:00
Kevin Hartmann 320e8379b3 Now convert pure numeric ids to "npm-<id>". 2021-05-03 12:55:17 -04:00
jamesagnew 82be821628 Credit for #2577 2021-05-03 08:03:49 -04:00
jamesagnew 573097379d Credit for #2623 2021-05-02 17:20:16 -04:00
James Agnew 0cea403800
Fix vulnerability warning on maven plugin (#2621) 
* Fix vulnerability warning on maven plugin

* Compile fixes

* Fix bootstrap dep

* Test fix

* Fix tests

* FIx deps
 2021-05-02 12:14:32 -04:00
James Agnew 970a9884f0
Avoid tag definition constraint (#2620) 
* Avoid tag definition constraint failure

* Version bumps

* Add changelog

* Avoid guava issue

* Test fix

* Test fix

* Bump pom
 2021-05-01 17:16:15 -04:00
Kai Kewley 55ef6f8653
Add Snowstorm to the points map. (#2582) 2021-04-30 19:05:46 -04:00
jamesagnew 12c0bcda47 Credit for #2579 2021-04-30 19:03:47 -04:00
Kevin Hartmann b3afe41de8 Added test to make sure we have loaded the expected package id. 2021-04-30 15:14:19 -04:00
Tadgh 983d811af6
Merge pull request #2587 from hapifhir/issue-2585-enhance-placeholder-targets-logic 
Issue 2585 enhance placeholder targets logic
 2021-04-30 12:55:27 -04:00
Tadgh 42109e8a4a Add changelog 2021-04-29 18:31:10 -04:00
Nick Goupinets 8cde076f1e Merge branch 'master' into 2566_update_s13n_and_validation_handling 2021-04-29 17:25:32 -04:00
JP 239d2496ea
CQL hardening and Dstu3 unit tests (#2450) 
* WIP for elm caching

* Bug fixes and a working DSTU3 unit test

* More tests, Address review feedback, add initial docs

* Update to cql-evaluator 1.2.0

* Fixes for documentation
 2021-04-29 14:52:13 -04:00
Nick Goupinets d67537231c Merge branch 'master' into 2566_update_s13n_and_validation_handling 2021-04-29 13:55:48 -04:00
James Agnew 95d7ba6fa8
Streamline Search SQLs (#2576) 
* Streamline SQL queries

* SQL query tidying

* Add changelog

* Test fixes

* Tests passing

* Ongoing work

* Test fixes

* Test fixes

* Build fix

* Cleanup

* Fixes
 2021-04-28 10:29:09 -04:00
Nick Goupinets 21d8cdfefc Merge branch 'master' into 2566_update_s13n_and_validation_handling 2021-04-28 10:16:27 -04:00
KevinIsAProgrammer dd61a8aa2c
Merge pull request #2575 from hapifhir/kh_2526_Add_Operation_Section_to_Conformance_Statements_resource_section 
Kh 2526 add operation section to conformance statements resource section
 2021-04-27 22:47:30 -04:00
Tadgh ac1d4e3e4f
Merge pull request #2542 from hapifhir/issue-2534-new-tx-pointcut 
Add new pointcut for transaction processing completed.
 2021-04-27 18:42:19 -04:00
Kevin Hartmann b9151a4a75 Added Changelog. 2021-04-27 16:34:24 -04:00
Nick Goupinets 024f553fc9 Merge branch 'master' into 2566_update_s13n_and_validation_handling 2021-04-27 09:31:42 -04:00
jamesagnew 00a37deb08 Credit for #2384 2021-04-27 08:43:25 -04:00
Tadgh 798e960bb8 Merge remote-tracking branch 'origin/master' into issue-2534-new-tx-pointcut 2021-04-26 15:26:34 -04:00
Nick Goupinets 9e153ddbcd Updated docs 2021-04-26 14:26:21 -04:00
Kevin Dougan SmileCDR 0246e7dd0e
2572 - Add master Branch changes related to backport of fix for #2171… (#2574) 
* 2572 - Add master Branch changes related to backport of fix for #2171 for new 5.3.3 release.

* 2572 - Added some missing changelog folders for the v5.3.1 and v5.3.2 releases.

* 2572 - Added a missing backport changelog entry for the v5.3.1 release.

* 2572 - Added a missing VersionEnum entry for the V5_3_1 release.
 2021-04-26 14:13:42 -04:00
Tadgh b200c10ced Merge remote-tracking branch 'origin/master' into issue-2534-new-tx-pointcut 2021-04-26 09:48:30 -04:00
jamesagnew 987264b271 Version bump JENA 2021-04-25 17:38:04 -04:00
James Agnew 2ba1005762
OpenAPI Support (#2560) 
* Start work on OpenAPI

* Fixes

* Work on OpenAPI

* Cleanup

* Cleanup

* More swagger work

* Build fix

* More work

* More work

* Add documentation

* Docs fixes

* Add changelog

* License updates

* Add API

* Cleanup

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_plain/openapi.md

Co-authored-by: patrick-vachon-smilecdr <81274188+patrick-vachon-smilecdr@users.noreply.github.com>

* Work on scripts

* Add docs

* Compile fix

* Work on fixes

* Fix tests

* Test fix

* Test fix

* Build fix

* Tests

* Build fix

* Work on pipeline

* Version bump

* Test fix

* Version bump

* Test fix attempts

* Test fix

* Test fix

* Remove accidentally committed files

* Fixes

* Tets fixes

* Test fix

* Test fix

* Test fix

* Test fixes

* Test fixes

* Test fixes

* License header updates

* test fix

* Test fixes

* Test fix

* Test fixes

* Test fix

* Checkstyle bump

Co-authored-by: patrick-vachon-smilecdr <81274188+patrick-vachon-smilecdr@users.noreply.github.com>
 2021-04-25 15:40:50 -04:00
Tadgh 9c19a4c087 Add changelog 2021-04-23 09:11:36 -04:00
Tadgh a5f81988fc Merge branch 'improve-bundle-builder' into issue-2534-new-tx-pointcut 2021-04-21 16:53:49 -04:00
Tadgh b7166735f9 Merge remote-tracking branch 'origin/master' into issue-2534-new-tx-pointcut 2021-04-21 12:13:54 -04:00
Nick Goupinets 4e266462ec Bumped up version due to breaking changes 2021-04-20 16:17:27 -04:00
Nick Goupinets 1f10a15c35 Merge branch 'master' into 2515_MDM_survivorship_rules 2021-04-19 17:33:53 -04:00
Nick Goupinets 536ca0e73d Code review updates 2021-04-19 16:27:31 -04:00
Tadgh 3075a9b5e6 Still minor refactoring 2021-04-16 16:53:23 -04:00
jamesagnew 42c89ccedd Changelog 2021-04-15 08:22:44 -04:00
James Agnew ca2088f3ad
Add framework for Bulk Import (#2538) 
* Start work on bul;k import

* Work on bulk import

* Have batch working

* Working

* Working

* More work

* More work on bulk export

* Address fixmes

* License header updates

* Test fixes

* License header updates

* Test fix

* Test fix

* Version bumps

* Work on config

* Test cleanup

* One more version bump

* Version bump

* CLeanup

* A few additions

* Test fixes

* Test fix

* Test fix

* Migration fix

* Test fix

* Test fix
 2021-04-14 17:41:32 -04:00
Kevin Dougan SmileCDR 2ebc57b8a2
2548 - Add backport changelog Tag to backported fixes for #2533 and #2543. (#2549) 2021-04-14 13:33:07 -04:00
Ken Stevens 550602b2f1
added numeric matcher (#2547) 
* added numeric matcher

* changelog

* performance optimization

* fix test
 2021-04-14 13:15:30 -04:00
IanMMarshall 4cd0409bae
Merge pull request #2546 from hapifhir/2535_ignore_logical_structuredefinition_during_package_install 
2535 ignore logical structuredefinition during package install
 2021-04-14 10:54:37 -04:00
Kevin Dougan SmileCDR b45ddcc3da
2543 - Fix issue where versionned references are not being returned properly. (#2544) 
* 2543 - Fix issue where versionned references are not being returned properly.

* 2543 - Added changelog entries for this fix plus a previous fix for 2533.
 2021-04-14 08:45:49 -04:00
ianmarshall 0cb95ad556 Change package loader to not generate snapshot for logical StructureDefinition resources. 2021-04-13 22:30:22 -04:00
Tadgh fcbfb11506 Merge remote-tracking branch 'origin/master' into issue-2534-new-tx-pointcut 2021-04-13 15:55:01 -04:00
Tadgh a0c11d7c66 Update docs 2021-04-13 10:04:45 -04:00
James Agnew bc4266d3d2
Improve narrative templates for custom structures (#2537) 
* Improve narrative templates for custom structures

* Add changelog

* Test fix
 2021-04-12 06:00:31 -04:00
Diederik Muylwyk 1bd585162d
Fix typo in docs. (#2536) 2021-04-09 18:50:12 -04:00
Tadgh 99e10de5fb
Merge pull request #2487 from hapifhir/mdm-expansion-interceptor 
MDM Expansion Interceptor (poc)
 2021-04-09 11:23:04 -04:00
Tadgh 82fc7b7457 Fix typo 2021-04-09 10:51:12 -04:00
Diederik Muylwyk 38436e5c1b
Fix a typo in docs. (#2532) 
* Fixed poorly formatted changelog entry.

* Fixed typo.
 2021-04-08 14:57:20 -04:00
Diederik Muylwyk ec7cc8fbaa
Fixed poorly formatted changelog entry. (#2531) 2021-04-08 14:07:16 -04:00
James Agnew f70648484a
Avoid a deadlock uploading terminology in postgres (#2529) 
* Fix #2493

* Try to fix intermittent test failure
 2021-04-08 12:28:42 -04:00
James Agnew 462d9bc6c4
Fix compartment defs for R5 (#2528) 
* Fix compartment defs for R5

* Add changelog

* Test fix
 2021-04-08 05:59:05 -04:00
James Agnew a6cbf7eebd
Add support for hierarchycal valueset expansion (#2525) 
* Add support for hierarchycal valueset expansion

* Add changelog

* Add tests

* Cleanup

* Test fix

* Test fixes
 2021-04-06 17:36:54 -04:00
James Agnew fcffb04c7b
Allow unknown code systems during validation (#2523) 
* Allow unknown code systems during validation

* Add changelog

* Test fix
 2021-04-05 20:59:59 -04:00
James Agnew b617c7690d
Search Parameter Infrastructure Cleanup (#2522) 
* Search param service cleanup

* Work on collapsing search param

* Search param cleanup

* Work on build

* Test fix

* Test fixes

* Ongoing work

* Test fix

* Compile fix

* Test fixes

* Test fix

* Test fix

* License header updates

* Remove fixme

* Cleanup

* Cleanup
 2021-04-05 17:40:10 -04:00
Nick Goupinets d366558749 Merge branch 'master' into 2515_MDM_survivorship_rules 2021-04-05 09:17:42 -04:00
James Agnew 0bf746f23b
Add support for revincludes to CapabilityStatement generator (#2521) 
* Add support for revincludes to CapabilotyStatement generator

* Add changelog

* Fixes

* Test fix

* Test fixes

* Test fix

* Test fix

* More fixes to CS cache

* Test fix

* Test fix

* Test fix
 2021-04-05 08:29:04 -04:00
Tadgh 383c55e339 Add changelog 2021-04-01 11:33:45 -04:00
Tadgh 67fe940889 Update docs 2021-04-01 11:07:46 -04:00
Nick Goupinets 0cd14b971a Added changelog 2021-04-01 10:59:50 -04:00
Tadgh d8866ec75f Add doc caveats 2021-03-31 16:33:49 -04:00
Tadgh e5de34c51d Update docs 2021-03-31 16:08:09 -04:00
Tadgh f3c706d656 Add page for mdm expansion 2021-03-31 15:33:03 -04:00
Tadgh 696982ce1e Fix bean name. Update docs 2021-03-31 13:45:40 -04:00
Tadgh dbf050e32e pedantism sated 2021-03-31 10:14:18 -04:00
Tadgh aefe37aaf7 Add forgotten changelog 2021-03-31 09:59:06 -04:00
Tadgh 74be6761b1 Merge remote-tracking branch 'origin/master' into mdm-expansion-interceptor 2021-03-31 09:47:57 -04:00
Tadgh 8b69d161bd Update docs 2021-03-30 17:12:55 -04:00
jamesagnew 116bb12a58 Docs fix 2021-03-30 14:27:47 -04:00
James Agnew 049097e5b4
Improve CapabilityStatement Generation (#2511) 
* Start work

* Work on testing

* Version bump

* Test fix

* Compile fix

* Test Fixes

* Test fix

* Test fix

* Compile fix

* Tst fix

* Test fix

* Test fix

* Test fix
 2021-03-30 05:48:03 -04:00
Diederik Muylwyk b720c32c1d Version bump 2021-03-29 18:23:16 -04:00
Diederik Muylwyk bddd3f4c92 PointCutLatch now works with IPointcut instead of Pointcut 2021-03-29 18:20:33 -04:00
longma1 494c8e9593
Merge pull request #2483 from hapifhir/2478_add_extension_mdm_matcher 
2478 add extension mdm matcher
 2021-03-29 08:13:48 -06:00
jamesagnew 1576227fc8 Credit for #2194 2021-03-26 09:19:02 -04:00
Nick Goupinets 644885e91a Fixed typo in the docs 2021-03-25 18:32:08 -04:00
Nick Goupinets 05c3ca2512 Merge branch 'master' into 2478_add_extension_mdm_matcher 2021-03-25 12:22:23 -04:00
James Agnew 8352bc9c01
Correct the path to the select2 library in the testpage overlay (#2505) 
* Correct the path to the select2 library in the testpage overlay

* Add changelog
 2021-03-25 10:52:15 -04:00
long 6aab327612 modified documentation wording 2021-03-23 14:27:17 -06:00
Nick Goupinets de0399da23 Merge branch 'master' into 2478_add_extension_mdm_matcher 2021-03-22 09:34:32 -04:00
James Agnew dc41d5ad61
Add terminology mapping and display population interceptors (#2488) 
* Start work on code mapping interceptors

* Work on generation

* Add terminology mapping and display population interceptors

* Add changelog

* License header updates

* Test fixes

* Fix typo

* Interceptor fixes

* License header update

* Test fixes

* Mapping fixes

* Version bump

* License header updates

* Add null tests

* Add null guard

* Intermittent fix
 2021-03-21 12:03:57 -04:00
long 989e9e7903 refactored terserUtil, added equals function in ExtensionUtil 2021-03-17 13:02:59 -06:00
James Agnew d857048207
Preserve meta values in stored resources (#2481) 
* Fix #1731

* Test fix

* Test fixes

* Avoid intermittent failure
 2021-03-17 09:23:22 -04:00
Kunjan Patel bdee1f1269
Update points.json for adding a point in atlas (#2482) 2021-03-17 05:50:07 -04:00
Tadgh b191f1da2b
Merge pull request #2480 from hapifhir/issue-2479-bad-packages 
Have CreatePackageCommand automatically add fhirVersions based on --fhir-version flag
 2021-03-16 18:00:27 -04:00
michelgleeson 0a6c61372c
Parameterize term valueset concept view dao (#2477) 
* Generic the list type to accomidate different substring queries

* special subquery for Oracle

* change the conceptview dao depending on dialect

* address review comments

* remove generics

* no longer inherits

* copy paste from non Oracle version

* dang copy pasters

* changelog

Co-authored-by: Mike G <michel.gleeson@gmail.com>
 2021-03-16 16:26:19 -04:00
Tadgh c3e6de3aff Add changelog 2021-03-16 13:47:29 -04:00
Nick Goupinets 744adb2d08 Merge branch 'master' into ng_validation_s13n_interceptors 2021-03-15 10:32:04 -04:00
James Agnew 2e7eb972ff
Avoid NPE in ResourceVersionConflictResolutionStrategy for system request (#2471) 
* Avoid NPE in ResourceVersionConflictResolutionStrategy for system
request

* Add changelog
 2021-03-12 19:23:49 -05:00
Nick Goupinets e188a95d66 Merge branch 'master' into ng_validation_s13n_interceptors 2021-03-12 16:17:25 -05:00
James Agnew 0ad57c51bb
Fix resource reindexing on partitioned seerver (#2468) 
* Fix resource reindexing on partitioned seerver

* Add changelog

* Test fix

* Test fix

* Tets fix

* Test fix
 2021-03-12 14:14:39 -05:00
Nick Goupinets f9f0b2705d Merge branch 'master' into ng_validation_s13n_interceptors 2021-03-12 10:30:36 -05:00
Nick Goupinets 8b8bbcc91f Refactored based on the code review 2021-03-11 17:14:01 -05:00
James Agnew 2633cbd141
Improve error message for invalid date param (#2466) 
* Improve error message for invalid date param

* Add changelog

* Test fixes
 2021-03-11 14:23:02 -05:00
Nick Goupinets 8c77882da0 Merge branch 'master' into ng_validation_s13n_interceptors 2021-03-11 09:48:39 -05:00
Tadgh 75f756b49f Add changelog 2021-03-10 15:00:54 -05:00
Tadgh b7398cb6f2 Merge remote-tracking branch 'origin/master' into issue-2445-support-patient-level-export 2021-03-10 10:33:24 -05:00
Tadgh e26d757ba3 Merge remote-tracking branch 'origin/master' into issue-2445-support-patient-level-export 2021-03-09 22:54:24 -05:00
James Agnew 807d9d53f0
Improve performance for large transactions (#2462) 
* Performance tweaks

* Work on processing speed

* Disable no longer relevant tests

* Work on performance

* Work on tests

* Work on large transaction performance

* Add changelog

* Perf tweaks

* Test fixes

* Resolve FIXME

* Fixes

* Test cleanup

* Fix broken changelog entry
 2021-03-09 18:16:02 -05:00
Nick Goupinets 9056c95865 Updated docs 2021-03-09 16:41:50 -05:00
Nick Goupinets 02eae95c85 Merge branch 'master' into ng_validation_s13n_interceptors 2021-03-09 14:06:33 -05:00
James Agnew be50a46d76
Tweaks to contained searches (#2461) 
* Tweaks to contained searches

* Add changelog

* Build fix
 2021-03-09 11:51:30 -05:00
Frank Tao bf8e890a0c
Supported contained resource search (#2441) 
* POC for indexing on contained resource - test case may failed

* Test contained url

* Add a spt to handle contained flag

* Added search option for contained resource

* Impl contained resource search

* fixed typo

* Reworked on creating index based on the review comments

* Added changelog

* Added more test cases

Co-authored-by: jamesagnew <jamesagnew@gmail.com>
 2021-03-09 06:50:23 -05:00
Diederik Muylwyk 6cc8a5ce4d
Fix HasParam#doGetQueryParameterQualifier() (#2460) 
* Fix HasParam#doGetQueryParameterQualifier(); add changelog entry

* Fix bad test in SearchParameterMapTest
 2021-03-09 06:28:40 -05:00
Nick Goupinets ab4f02b2bd Added changelog 2021-03-08 18:02:40 -05:00
James Agnew 62df320ceb
Avoid a crash reading an unknown ID on partitioned server (#2451) 
* Avoid a crash reading an unknown ID on partitioned server. Fix #1953.

* Attempt 2 at fixing #1953
 2021-03-07 10:16:30 -05:00
Diederik Muylwyk 11ee6dedd3 Address CVE-2020-27223; bumped minor version of Jetty in root POM 2021-03-06 16:33:05 -05:00
Diederik Muylwyk 6035f78ddf Fix typos 2021-03-05 18:46:42 -05:00
Diederik Muylwyk 35645999d7 Add changelog entries. 2021-03-04 19:55:39 -05:00
Tadgh f5372c9f07 Fix typo 2021-03-04 16:53:52 -05:00
Tadgh 6129194353 Merge remote-tracking branch 'origin/master' into issue-2445-support-patient-level-export 2021-03-04 16:53:20 -05:00
Tadgh 2f1518344b Add changelogs, add patientbulkredaer implementation 2021-03-04 16:53:05 -05:00
Diederik Muylwyk 8dcac3e8b7
Improved generic client docs to remind of client.search.byUrl for params like _has. (#2440) 2021-03-03 18:34:18 -05:00
James Agnew db44244405
Fix #2426 - Include modifiers in generic search URLs for map (#2428) 2021-02-28 10:33:43 -05:00
Tadgh 74066a81b6
Merge pull request #2420 from hapifhir/issue-2401-add-support-for-group-id-export 
Issue 2401 add support for group id export
 2021-02-26 10:23:42 -05:00
Ken Stevens 7d769e3b05
Issue 2332 create via put for implementationguide that references some placeholders (#2423) 
* begin with failing test

* fixed.  test passes.

* documentation and changelog

* added ConceptMap

* review feedback
 2021-02-26 09:44:48 -05:00
Tadgh 1663e367a6 Address review comments 2021-02-25 16:23:36 -05:00
Tadgh 3937d2ef01 Remove some dead code 2021-02-24 15:57:55 -05:00
Tadgh 8e45a84927 Add changelog 2021-02-24 15:28:52 -05:00
Kevin Hartmann 3b60034a08 Added Changelog entry 2021-02-24 15:25:36 -05:00
michaelabuckley ad6431b24c
Merge pull request #2418 from hapifhir/add-changelog-for-mdm-update 
Add MDM FHIRPath Changelog
 2021-02-24 13:52:22 -05:00
Patrick Werner cf1f2f27db
added nullchecks to prevent NPE (#2417) 
* added nullchecks to prevent NPE
fixes #2171

* Add test from #2171 and changelog

Co-authored-by: jamesagnew <jamesagnew@gmail.com>
 2021-02-24 10:09:04 -05:00
Ken Stevens 30905aeba7 Merge remote-tracking branch 'origin/master' into issue-2401-add-support-for-group-id-export 2021-02-24 09:38:59 -05:00
Tadgh 66b59ae327 Update issue number 2021-02-24 09:22:10 -05:00
Tadgh 5ee7793ac4 Add MDM Changelog 2021-02-24 09:20:45 -05:00
Tadgh 29eabbd4f0 Add skeleton 2021-02-23 18:42:41 -05:00
Tadgh ecacef0498 Add bulk export md file 2021-02-23 18:39:25 -05:00
Tadgh c92f302d41
Merge pull request #2410 from hapifhir/2409-support-fhirpath-in-field-matchers 
Support FHIRPath in field matchers if present
 2021-02-23 09:48:14 -05:00
James Agnew b108e43600
Allow partition date for non-partitionable resources (#2407) 
* Allow partition date for searchparam resources

* Cleanup

* Test fix

* Documentation update

* Docs tweak
 2021-02-22 20:49:09 -05:00
Tadgh 18b61f21d0 re-add only relevant code 2021-02-22 18:23:03 -05:00
Jens Kristian Villadsen 65c9f5fbf8
Update repository_validating_interceptor.md (#2368) 
Refined the wording on the repo interceptor
 2021-02-22 07:28:49 -05:00
Nick Goupinets 3541249a5e
Fixed docs (#2405) 2021-02-22 05:42:59 -05:00
James Agnew 3eda19c65a
Version bump (#2400) 
* Version bump

* Docs changes

* Docs tweaks

* Docs tweak

* Spelling fixes

* Docs tweaks
 2021-02-18 11:07:49 -05:00
Kevin Dougan SmileCDR aa05667761
Clarified partitioning docs. (#2396) 
* Clarified partitioning docs.

* Added some more ResourceTypes to the list of non-partitioned ones according to the authoritative list found in RequestPartitionHelperSvc.java.
 2021-02-17 08:32:37 -05:00
jamesagnew 919c1dbddc Version bump to 5.3.0 2021-02-17 07:10:13 -05:00
James Agnew 65ac0e80fb
Add CapabilityStatement customizer (#2387) 
* Add CapabilityStatement customizer

* Fix javadocs
 2021-02-15 14:58:34 -05:00
ianmarshall 7413584bff Make LOINC Top2000* files optional in terminology loader. 2021-02-10 22:35:15 -05:00
Tadgh 2759db2a31
Merge pull request #2371 from hapifhir/config-error-on-url-protocol 
Throw ConfigurationError if you attempt to provide a Rest URL that contains a protocol.
 2021-02-09 20:25:14 -05:00
Tadgh 64878c23d3 Update text, add changelog 2021-02-09 19:03:09 -05:00
James Agnew dd7a156d19
Call startOperation for paging requests (#2370) 2021-02-09 15:47:11 -05:00
jamesagnew 028ef1b088 Credit for #2365 2021-02-08 09:15:04 -05:00
jamesagnew da847ad08a Credit for #2282 2021-02-07 12:32:41 -05:00
James Agnew c69d741b43
Add CapbilityStatement customizing hook (#2364) 
* Add CapbilityStatement customizing hook

* Add additional method

* Interceptor service tweak
 2021-02-07 09:12:09 -05:00
Michael Buckley 42afcebd11 Merge in ca.uhn.fhir.rest.param.DateParamTest and add changelog. 2021-02-05 09:57:10 -05:00
Kevin Dougan SmileCDR dd13827290
Added changelog entry for -measure operation. (#2347) 2021-02-03 14:01:20 -05:00
jamesagnew c0142a67b1 Credit for #2340 2021-02-02 14:27:42 -05:00
jamesagnew 8c5b54bf54 Fix broken changelog 2021-01-30 19:26:58 -05:00
jamesagnew 5961fde2dd Docs tweak 2021-01-29 16:12:06 -05:00
Ken Stevens ba63f65115
changed $expand filter matching from left-match to contains match (#2327) 
* changed $expand filter matching from left-match to contains match

* changelog

* pure substring match is too generous (a regression test checked for that).  Tightened the match up to word boundaries.

* CLean up to avoid intermittent test failure

Co-authored-by: jamesagnew <jamesagnew@gmail.com>
 2021-01-29 12:37:54 -05:00
jamesagnew 589eb3158e Credit for #2310 2021-01-29 11:02:51 -05:00
Nick Goupinets 3be480c9f0 Merge remote-tracking branch 'origin/master' into ng_20201218_survivorship_poc 2021-01-27 16:47:40 -05:00
James Agnew 909d9f742c
Enable Auto-reference versions in JPA (#2323) 
* Automatic reference versions

* Auto reference versions

* resolve fixmes

* Add changelog

* Test fixes

* Test fixes

* Resolve fixmes

* Work on versioning

* Add support for _includes

* Update headers

* Change visibility

* One more tweak

* One more API tweak

* Fixes

* Account for review comments

* Fix errorprone reported issue

* Test fix

* Test fixes

* Test fixes
 2021-01-27 14:49:10 -05:00
Nick Goupinets 04db4ed229 Merge remote-tracking branch 'origin/master' into ng_20201218_survivorship_poc 2021-01-26 09:18:20 -05:00
jamesagnew c55410e6b6 Add changelog for #2302 2021-01-23 17:54:51 -05:00
Ken Stevens 749934d5f1
fixed name text indexing (#2309) 
* fixed name text indexing

* fixed name text indexing
 2021-01-22 15:39:26 -05:00
Nick d783229406 updated docs 2021-01-22 13:28:24 -05:00
Nick cfc798cb2b Merge remote-tracking branch 'origin/master' into ng_20201218_survivorship_poc 2021-01-22 09:45:04 -05:00
Tadgh edd9769686 Add documentation fixes for MDM-match 2021-01-22 09:17:51 -05:00
Nick 82e52750e7 Merge branch 'master' into ng_20201218_survivorship_poc 2021-01-21 09:00:28 -05:00
James Agnew 14b0688f69
Bump core version to 5.2.16 (#2308) 
* Bump core library version

* Test fix

* Build fixes

* Some test fixes

* One more bit of docs

* Build fix

* Test fix

* Test fix

* Docs fix
 2021-01-21 05:30:23 -05:00
Nick 4b53ef3920 Merge remote-tracking branch 'origin/master' into ng_20201218_survivorship_poc 2021-01-20 14:59:38 -05:00
Tadgh 159128109b Add versionenum value 2021-01-20 10:49:08 -05:00
Nick ae9d4a191f Merge remote-tracking branch 'origin/master' into ng_20201218_survivorship_poc 2021-01-19 11:34:01 -05:00
James Agnew 874b16207f
Bundle.entry.resource.id should not be stripped on POST from client #2297 (#2303) 2021-01-19 11:12:42 -05:00