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2697 Commits

Author SHA1 Message Date
James Agnew 55a67ae055 Work on everything fixes 2017-06-19 06:16:27 -04:00
James Agnew e6cb973f5f Add test 2017-06-17 08:29:30 -04:00
James Agnew e27ceead55 Fix test 2017-06-16 10:53:25 -04:00
James Agnew 1047c63f3c Add missing commit for JPA maximum fetch size 2017-06-16 10:35:39 -04:00
James Agnew 40a70b874c Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-16 09:49:06 -04:00
James Agnew d40c5fa5e3 Add DAO setting to specify maximum query size 2017-06-16 09:41:45 -04:00
James Agnew 69849dd3c5 Optimize queries in JPA 2017-06-14 08:35:41 -04:00
James Agnew 959cb700fd Merge pull request #672 from jamesagnew/minute_precision_in_searchparams 
Minute precision in searchparams
 2017-06-12 11:50:09 -04:00
James Agnew d59b832e74 Merge branch 'master' into minute_precision_in_searchparams 2017-06-12 11:50:01 -04:00
James a50a86d9af Fix crash in JPA server if numeric search parameter has no value 2017-06-11 09:16:48 -04:00
James Agnew 404037b441 Fix some compile issues 2017-06-09 19:37:11 -04:00
James Agnew 7632cfa991 Fix local dependency 2017-06-09 19:21:04 -04:00
James Agnew 7588a2ecff Modify patch for #655 so that it fixes #604 without causing us to allow 
invalid values
 2017-06-09 16:30:20 -04:00
James Agnew e1cfc8212e Merge in patch from #655 2017-06-09 15:36:19 -04:00
christian ohr 872d72629c #604:allow MINUTE precision for datetimes 2017-06-09 15:21:53 -04:00
James Agnew c2e5fa3f18 Fix #667 - When using the AuthorizationInterceptor with the JPA server, when a client is updating a resource from A to B, the user now needs to have write permission for both A and B 2017-06-09 11:48:17 -04:00
James 14edc79ac1 Version bump to 2.6-SNAPSHOT 2017-06-09 07:28:29 -04:00
James 8b5209ff67 Version bump to 2.5 2017-06-08 06:34:44 -04:00
James Agnew b6e9a753ca Merge pull request #660 from HHSIDEAlab/fix-race-condition-in-if-none-exists 
Hacky but workable fix for race condition surfaced by If-None-Exists creates
 2017-06-07 21:51:05 -04:00
James Agnew b2f95f2d1c Merge pull request #668 from jamesagnew/revert-655-master 
Revert "Allow MINUTE precision for datetimes. Closes #604"
 2017-06-07 21:43:12 -04:00
James Agnew c04146a76a Revert "Allow MINUTE precision for datetimes. Closes #604" 2017-06-07 21:42:52 -04:00
James 401185baff Fix for #660 2017-06-07 21:39:38 -04:00
James Agnew 4caa5dfa8d Merge pull request #656 from aehrc/feature/scalable_searchbuilder 
Improve SearchBuilder query generation for code:modifier searches
 2017-06-07 21:35:50 -04:00
James 72fbd045d9 Credit for #656 2017-06-07 21:34:11 -04:00
James Agnew 1b557b05f0 Merge pull request #655 from ohr/master 
Allow MINUTE precision for datetimes. Closes #604
 2017-06-07 21:30:33 -04:00
James 1404aa02c4 Credit for #655 2017-06-07 21:29:16 -04:00
James Agnew 30b18c9a72 Merge pull request #652 from joelsch/upload-definitions-bugfix 
revise ValueSet/request-intent URL, to resolve CLI upload-definitions problem
 2017-06-07 21:23:09 -04:00
James d57a8a6c2b Credit for #601 2017-06-07 21:22:38 -04:00
James 993e99770d Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-07 21:20:45 -04:00
James Agnew 7d5fbe7482 Merge pull request #649 from iceoss/rest-client-patch 
Null access fix for BaseClient exception handlers.
 2017-06-07 21:15:22 -04:00
James e03549daae Credit for #649 2017-06-07 21:14:53 -04:00
James Agnew 7c6bb01a8b Don't allow JPA server to save duplicate or empty tags, and fix #664 by 
preventing multiple threads from loading structure definitions for
validation at the same time
 2017-06-06 16:44:13 -04:00
Karl M. Davis aa134fc423 Hacky but workable fix for race condition surfaced by If-None-Exists creates. 
Some notes from other attempts I made to fix this in a less hacky way:

* Tried to @Autowire myResourceDaos from a setter (rather than using the annotation on a field), and initialize myResourceTypeToDao in that setter, instead. Couldn't get it to work: Spring started throwing odd bean dependency errors. Don't really understand why.
* Tried to move the exceptions being thrown on null getDao(Class) results into that method, but that was breaking a test case. Didn't investigate why.
 2017-06-01 03:17:38 -04:00
James Agnew 52a5fcce17 Adding logging 2017-05-30 15:39:33 -04:00
James Agnew 97c83cd8f0 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-05-30 10:05:34 -04:00
James Agnew 3db4091601 Add a null check 2017-05-30 10:05:27 -04:00
James 6d59b0f5e0 Indexing logging 2017-05-30 10:01:33 -04:00
Michael Lawley d0a927ae3f use disj. of AND and IN for code:modifier searches 
Without this, OR conditions with too many disjuncts are generated which can lead to
failures in the underlying database code generation.
 2017-05-29 14:57:16 +10:00
James Agnew 6168f4ab32 FIx JDK7 dep 2017-05-26 21:35:40 -04:00
James Agnew 7d659c88e5 Validator incorrectly rejected references where only an identifier was 
populated
 2017-05-26 21:32:12 -04:00
christian ohr aafde2eceb #604:allow MINUTE precision for datetimes 2017-05-26 15:27:58 +02:00
James ba40f44d27 Properly index decimal datatype 2017-05-26 06:39:38 -04:00
Jeff Chung 2fa7aedf63 Fixed the resource type comparison to not use startsWith 2017-05-25 16:47:09 -07:00
James Agnew 6cf3d865f0 Fix test 2017-05-25 16:06:44 -04:00
James Agnew b96932a5c5 Fix dependency on new version of commons-codec 2017-05-25 15:24:47 -04:00
James e2b329382a Add some logging to searches 2017-05-25 08:31:29 -04:00
James Agnew 32de48f392 Fix broken tests 2017-05-24 15:50:53 -04:00
James Agnew fcc04a8998 Update tester to use DSTU3 server by default 2017-05-24 14:28:37 -04:00
James Agnew 5bdd10c7ab Include patient in $everything even if there are no other resources 2017-05-24 14:24:01 -04:00
Joel Schneider (NMDP) dbdebdbcda revise ValueSet/request-intent URL, to resolve CLI upload-definitions problem 2017-05-22 23:39:12 -05:00