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8298 Commits

Author SHA1 Message Date
Tadgh 64564d5f1e
Merge pull request #2635 from hapifhir/issue-2634-increase-src-path-length 
Increase length of HFJ_RES_LINK SRC_PATH field.
 2021-05-06 11:25:54 -04:00
Tadgh cf864c2078 Merge remote-tracking branch 'origin/master' into issue-2634-increase-src-path-length 2021-05-06 09:10:48 -04:00
James Agnew 1424d48912
Avoid NPE in concept mapping (#2637) 2021-05-06 05:25:38 -04:00
Ken Stevens a4856bba17
fix iBundleProvider.getResources(from,to) throwing a NPE (#2632) 
* fix iBundleProvider.getResources(from,to) throwing a NPE

* change log

* review feedback

* rename test to IT that has concurrency failures
 2021-05-05 21:50:51 -04:00
Tadgh 98cc301a27 Allow failure during migration 2021-05-05 17:01:57 -04:00
Tadgh 4031968357
Calls with zero request details and non-partitionable resource automatically go to default now. This updates the test to pass in servletrequest details, simulating a user request (#2636) 2021-05-05 16:57:12 -04:00
Tadgh d17ee2eb78 Add changelog 2021-05-05 16:01:29 -04:00
Tadgh bf37d1db74 Fix test 2021-05-05 15:36:20 -04:00
Tadgh e15825b336 Increase length, add test 2021-05-05 15:29:02 -04:00
Tadgh 95f951e776
Merge pull request #2633 from hapifhir/hotfix/broken-refresher-cache 
Fix for multitenant environment cache refreshing
 2021-05-04 16:27:31 -04:00
Tadgh 0fb0419a67 If null, return default partition during create 2021-05-04 16:22:01 -04:00
Tadgh fcc662da79 Fix not sending request details 2021-05-04 16:18:34 -04:00
dependabot[bot] 9e61136c2d
Bump greenmail from 1.5.11 to 1.6.3 (#2626) 
Bumps [greenmail](https://github.com/greenmail-mail-test/greenmail) from 1.5.11 to 1.6.3.
- [Release notes](https://github.com/greenmail-mail-test/greenmail/releases)
- [Commits](https://github.com/greenmail-mail-test/greenmail/compare/release-1.5.11...release-1.6.3)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2021-05-03 17:31:03 -04:00
KevinIsAProgrammer 75c74a22db
Merge pull request #2619 from hapifhir/2590_preserve_the_ID_value_of_the_resources_in_the_package_loader 
2590 preserve the id value of the resources in the package loader
 2021-05-03 15:39:14 -04:00
Kevin Hartmann 320e8379b3 Now convert pure numeric ids to "npm-<id>". 2021-05-03 12:55:17 -04:00
James Agnew 172ea770b8
Fix transaction references (#2627) 2021-05-03 12:25:51 -04:00
jamesagnew 8be50641e5 License header 2021-05-03 08:45:54 -04:00
jamesagnew cc05ff9ad4 Fix openapi interceptor bug 2021-05-03 08:09:58 -04:00
jamesagnew 82be821628 Credit for #2577 2021-05-03 08:03:49 -04:00
Hanan Awwad 871914bd3b
Concept properties are not being saved while using the operation apply-codesystem-delta-add (#2577) 
* fix issue #2280

* revert the indentation back.

* revert-back untouched changes.

* saving concept properties using the operation apply-codesystem-delta-add

* fix test cases; add check for null properties

* fix test; expected file descriptors
 2021-05-03 08:02:20 -04:00
dependabot[bot] 91fa23b11a
Bump fhir_core_version from 5.3.10 to 5.3.11 (#2625) 
Bumps `fhir_core_version` from 5.3.10 to 5.3.11.

Updates `org.hl7.fhir.utilities` from 5.3.10 to 5.3.11

Updates `org.hl7.fhir.convertors` from 5.3.10 to 5.3.11

Updates `org.hl7.fhir.validation` from 5.3.10 to 5.3.11

Updates `org.hl7.fhir.dstu2` from 5.3.10 to 5.3.11

Updates `org.hl7.fhir.dstu2016may` from 5.3.10 to 5.3.11

Updates `org.hl7.fhir.dstu3` from 5.3.10 to 5.3.11

Updates `org.hl7.fhir.r4` from 5.3.10 to 5.3.11

Updates `org.hl7.fhir.r4` from 5.3.10 to 5.3.11

Updates `org.hl7.fhir.r5` from 5.3.10 to 5.3.11

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2021-05-03 07:58:55 -04:00
jamesagnew 5db01f3139 Build fixes 2021-05-03 05:57:45 -04:00
James Agnew 593230f6bf
Fix openapi redirect (#2624) 
* Fix redirect for openapi

* FIx deps
 2021-05-03 05:32:34 -04:00
jamesagnew 573097379d Credit for #2623 2021-05-02 17:20:16 -04:00
Jari Maijenburg 6dc12603bb
Fixed GraphQL token parameter matching bug (#2623) 2021-05-02 17:18:51 -04:00
James Agnew 0cea403800
Fix vulnerability warning on maven plugin (#2621) 
* Fix vulnerability warning on maven plugin

* Compile fixes

* Fix bootstrap dep

* Test fix

* Fix tests

* FIx deps
 2021-05-02 12:14:32 -04:00
James Agnew 970a9884f0
Avoid tag definition constraint (#2620) 
* Avoid tag definition constraint failure

* Version bumps

* Add changelog

* Avoid guava issue

* Test fix

* Test fix

* Bump pom
 2021-05-01 17:16:15 -04:00
Kai Kewley 55ef6f8653
Add Snowstorm to the points map. (#2582) 2021-04-30 19:05:46 -04:00
jamesagnew 12c0bcda47 Credit for #2579 2021-04-30 19:03:47 -04:00
Tuomo Ala-Vannesluoma fbca9f8060
Offset query fixes (#2579) 
* Fix new searchbuilder limit similar to legacy searchbuilder

* Fix returning includes when using offset query

* Add unit tests for offset query with include

* Only use count param if offset is given (sometimes we want to search synchronously more if DAO is used directly)

* Throw if offset is tried to use with everything operations

* Do not offer offset paging for everything operations and fix tests to assert that
 2021-04-30 19:01:27 -04:00
Kevin Hartmann e8ac24b4df Test now passes. 2021-04-30 15:17:22 -04:00
Kevin Hartmann b3afe41de8 Added test to make sure we have loaded the expected package id. 2021-04-30 15:14:19 -04:00
James Agnew 292b350f2c
Bump Junit for to avoid OWASP flag (#2618) 2021-04-30 14:39:16 -04:00
Tadgh 983d811af6
Merge pull request #2587 from hapifhir/issue-2585-enhance-placeholder-targets-logic 
Issue 2585 enhance placeholder targets logic
 2021-04-30 12:55:27 -04:00
Nick Goupinets d14807b8c7
Merge pull request #2567 from hapifhir/2566_update_s13n_and_validation_handling 
Update s13n and validation handling
 2021-04-30 11:29:04 -04:00
Tadgh 42109e8a4a Add changelog 2021-04-29 18:31:10 -04:00
Nick Goupinets 8cde076f1e Merge branch 'master' into 2566_update_s13n_and_validation_handling 2021-04-29 17:25:32 -04:00
Nick Goupinets 896c8fbd4f Code review 2021-04-29 17:25:06 -04:00
Tadgh ac7c684437 Refactor to support all new tests 2021-04-29 17:01:19 -04:00
Tadgh 78271a2931 Create tests for all possiblye use cases 2021-04-29 15:25:11 -04:00
Kevin Dougan SmileCDR 646faa10e1
2540 - Upgraded the fhir_core_version from 5.3.0 to 5.3.10 (#2545) 
* 2540 - Upgraded the fhir_core_version from 5.3.0 to 5.3.9.

* 2540 - Updated the Unit Test messages due to the upgraded dependencies.

* 2540 - Fixed some additional Unit Test message checks.

* 2540 - Updated the POM to refer to fhir_core_version 5.3.10-SNAPSHOT so a FULL Pipeline Build can run to verify that everything is fixed now.

* 2540 - Added some DEBUG Sysout logging to try and determine why the Pipeline Builds fail for a specific Unit Test when it passes locally...

* 2540 - Added some more logging to try and determine why the Pipeline Builds fail for a specific Unit Test when it passes locally...

* 2540 - Updated a Unit Test to account for a newly returned search param.

* 2540 - Updated a Unit Test to account for a newly returned search param and removed some debug output.
 2021-04-29 15:00:37 -04:00
JP 239d2496ea
CQL hardening and Dstu3 unit tests (#2450) 
* WIP for elm caching

* Bug fixes and a working DSTU3 unit test

* More tests, Address review feedback, add initial docs

* Update to cql-evaluator 1.2.0

* Fixes for documentation
 2021-04-29 14:52:13 -04:00
Tadgh 3ff2ad37ff Start with failing test 2021-04-29 14:08:50 -04:00
Nick Goupinets d67537231c Merge branch 'master' into 2566_update_s13n_and_validation_handling 2021-04-29 13:55:48 -04:00
Nick Goupinets d45972abed Added geo accuracy code 2021-04-29 11:46:09 -04:00
Tadgh fc1cef24ae
Merge pull request #2584 from hapifhir/whitesource/configure 
Configure WhiteSource Bolt for GitHub
 2021-04-29 09:47:48 -04:00
whitesource-bolt-for-github[bot] 7c3ce4147f
Add .whitesource configuration file 2021-04-29 13:42:31 +00:00
Nick Goupinets 4050c42bf4 Treating C addresses as valid 2021-04-28 15:31:34 -04:00
Nick Goupinets ae1c26afea Updated docs 2021-04-28 10:45:15 -04:00
James Agnew 95d7ba6fa8
Streamline Search SQLs (#2576) 
* Streamline SQL queries

* SQL query tidying

* Add changelog

* Test fixes

* Tests passing

* Ongoing work

* Test fixes

* Test fixes

* Build fix

* Cleanup

* Fixes
 2021-04-28 10:29:09 -04:00