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5185 Commits

Author SHA1 Message Date
Ken Stevens f05d212a40 Fixed a data migration error KHS & DM 2019-08-01 17:22:18 -04:00
Ken Stevens 52fc057457
Merge pull request #1407 from jamesagnew/dm-add-trm-codesystem-ver-cs-display-to-migration-tool 
Resolve "Add TRM_CODESYSTEM_VER.CS_DISPLAY to migration tool."
 2019-08-01 14:50:09 -04:00
Diederik Muylwyk 8475aa4cc8 Add TRM_CODESYSTEM_VER.CS_DISPLAY to migration tool. 2019-08-01 14:44:03 -04:00
Diederik Muylwyk 33b4f7537f
Resolve "1366 expand operation needs to be optimized for large valuesets 3" (#1403) 
* Added TRM_VALUESET.EXPANSION_STATUS column, index, fields to entity, and migration tasks.

* Incremental work on large ValueSet expansion support; still need to fix asynchronous tests and actually use the terminology tables when expanding.

* Incremental work on large ValueSet expansion support; still need to actually use the terminology tables when expanding.
 2019-08-01 13:57:25 -04:00
Diederik Muylwyk d67de13708 Syncing master into working branch. 2019-08-01 13:51:26 -04:00
Diederik Muylwyk 78842164fd Addressing review comments. 2019-08-01 13:37:46 -04:00
jamesagnew 46c8c61932 Restore build - May need to roll back the RDF changes 2019-08-01 10:14:56 -04:00
jamesagnew 39c2a95ce7 Credit for #1321 2019-08-01 09:29:43 -04:00
James Agnew d3ef577418
Merge pull request #1321 from uurl/rdf_parser 
RDF parser
 2019-08-01 09:26:04 -04:00
James Agnew 0f4738c1b5
Merge branch 'master' into rdf_parser 2019-08-01 09:25:40 -04:00
jamesagnew e20443010d Credit for #1404 2019-08-01 06:38:37 -04:00
Seth Rylan Gainey c0c5714d36 Fix for https://github.com/jamesagnew/hapi-fhir/issues/1402. Add 
historyForInstance and historyForType to AbstractJaxRsResourceProvider with
non-ambiguous @Path values.
 2019-08-01 06:34:59 -04:00
Ken Stevens f1d3fc2307 Changed Stopwatch getThroughput param from int to long 
Added FhirVersion accessor to AnyListResource
 2019-08-01 06:32:09 -04:00
Diederik Muylwyk ffda92514a Incremental work on large ValueSet expansion support; still need to actually use the terminology tables when expanding. 2019-07-31 16:33:50 -04:00
Diederik Muylwyk 0e2dcce841 Incremental work on large ValueSet expansion support; still need to fix asynchronous tests and actually use the terminology tables when expanding. 2019-07-31 15:52:25 -04:00
James Agnew 3196bc370f Add a default implementation to new terminology service loader method 2019-07-31 10:07:51 -04:00
James Agnew b956b7552e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-07-30 17:52:47 -04:00
James Agnew 04ce9cfc1a Add support for uploading custom terminology using the 
$upload-external-code-system operation
 2019-07-30 17:30:18 -04:00
Diederik Muylwyk d1cba9f928 Syncing master into working branch. 2019-07-29 19:39:29 -04:00
jamesagnew cf5201c67b Add a constructor 2019-07-29 19:31:47 -04:00
Diederik Muylwyk a8489f4331 Added TRM_VALUESET.EXPANSION_STATUS column, index, fields to entity, and migration tasks. 2019-07-29 19:30:46 -04:00
jamesagnew a3cbdf0956 Make terminologyuploaderprovider not abstract 2019-07-29 19:02:51 -04:00
James Agnew b030d1af31 Test fixes 2019-07-29 18:17:40 -04:00
James Agnew a4ca5374ec
Add terminology delta operations (#1401) 
* Start work on delta operations

* Add changelog

* Some build fixes

* Move upload terminology command to CodeSystem resource

* Updates

* Some test fixes

* Add changelog

* Some test fixes

* More test fixes

* Test fix

* Add additional tests

* Transaction boundary fixes
 2019-07-29 17:46:42 -04:00
jamesagnew 8158292665 Allow operations to better work across multiple versions of FHIR 2019-07-26 05:46:37 -04:00
Diederik Muylwyk d03fc0f61d
Add null check for shortName before adding designation. (#1396) 2019-07-25 11:06:02 -04:00
James Agnew 3460069d38
Merge pull request #1393 from jamesagnew/expunge-resource-hook 
Expunge resource hook
 2019-07-25 05:41:39 -04:00
Ken Stevens a7817b07ca Pre PR cleanup 2019-07-24 22:00:34 -04:00
Ken Stevens a20b738161 Pre PR cleanup 2019-07-24 22:00:26 -04:00
Ken Stevens 84f5c7d467 Merge remote-tracking branch 'remotes/origin/master' into expunge-resource-hook 2019-07-24 21:54:05 -04:00
Ken Stevens e05387da02 Recover from failed merge again. This time with feeling! 2019-07-24 13:46:20 -04:00
James Agnew ddb8e385bf Test fix 2019-07-24 13:24:48 -04:00
James Agnew bff951338c Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-07-24 13:19:56 -04:00
James Agnew b78cd1e62e Merge branch 'add-pid-to-created-resource' 2019-07-24 13:19:38 -04:00
James Agnew e8cf2738f0 Handle oversized payload request 2019-07-24 13:18:30 -04:00
James Agnew b9dbd69e5d Fix limiting on size 2019-07-24 13:11:05 -04:00
Ken Stevens 64e83fa3df Revert "Recovering Pointcut from a failed merge" 
This reverts commit 19c0b4fd
 2019-07-24 13:00:49 -04:00
Ken Stevens 19c0b4fdd2 Recovering Pointcut from a failed merge 2019-07-24 11:30:36 -04:00
Ken Stevens 0efe69f891 Merge remote-tracking branch 'remotes/origin/master' into expunge-resource-hook 
# Conflicts:
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/expunge/ResourceExpungeService.java
 2019-07-24 10:41:37 -04:00
Ken Stevens 37411a6ae2 Merge remote-tracking branch 'remotes/origin/master' into expunge-resource-hook 2019-07-24 10:41:11 -04:00
jamesagnew 6b599c29e5 Merge branch 'add-pid-to-created-resource' 2019-07-23 17:36:15 -04:00
James Agnew bff39e4139 Try to deal with an intermittent failure 2019-07-23 15:58:14 -04:00
James Agnew 9094323c43 Add a test 2019-07-23 14:47:27 -04:00
James Agnew b1e409519d Add a test 2019-07-23 14:47:27 -04:00
Ken Stevens 980f058b3f Merge remote-tracking branch 'remotes/origin/master' into add-pid-to-created-resource 2019-07-23 09:13:53 -04:00
Ken Stevens 8d86e34bcf Merge remote-tracking branch 'remotes/origin/master' into expunge-resource-hook 
# Conflicts:
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/expunge/ResourceExpungeService.java
 2019-07-23 09:12:08 -04:00
jamesagnew 60ea922e8d Add license headers 2019-07-23 05:38:10 -04:00
James Agnew 7e3d062d15
Switch default client to JSON (#1392) 
* Start work on changing over

* Update tests

* More test fixes

* Work on generalizing binary access provider a bit

* Add expunge capability to binary storage, and also support actual binary
resources

* Work on binary provider

* Get the DB bound binary storage service working

* Test fixes

* Compile fix

* Fix compile error

* Test fix

* Test tweak

* Trying to figure out an intermittent failure

* Work on tests

* More work on tests

* Another test fix
 2019-07-22 21:27:10 -04:00
Ken Stevens a68addf89a Merge remote-tracking branch 'remotes/origin/master' into add-pid-to-created-resource 2019-07-22 17:02:41 -04:00
Ken Stevens 3582fe4c8a Merge remote-tracking branch 'remotes/origin/master' into expunge-resource-hook 2019-07-19 13:52:08 -04:00