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1692 Commits

Author SHA1 Message Date
Jeff Balbien
d417bf1225 fix bundle util bug 2018-05-25 09:19:59 -07:00
James Agnew
a3687e446e Correctly handle missing search params with new indexing infrastructure 2018-05-23 11:42:38 -04:00
James Agnew
2e74ad72cb Improve timeouts on test ports 2018-05-23 08:52:24 -04:00
James Agnew
2f2900e837 Improve indexing on JPA server in anticipation of a new indexing 
strategy in HAPI FHIR 3.5.0
 2018-05-23 08:09:57 -04:00
James Agnew
cadb51d36c
Merge pull request #875 from RuthAlk/fix_codeableconcept_narrative 
Fix error in narrative for CodeableConcept
 2018-05-23 06:38:08 -04:00
James Agnew
851ce85ac6
Merge branch 'master' into wip-DateRangeParam 2018-05-23 06:03:26 -04:00
James Agnew
4d93b78c24 Credit for #836 2018-05-22 08:44:17 -04:00
James Agnew
3a68bc19e7
Merge pull request #836 from RuthAlk/include_patch 
Fix problem with _include=MedicationRequest:medication
 2018-05-22 08:40:08 -04:00
James Agnew
4fd868afae Credit for #946 and add extensions to the CLI uploader 2018-05-16 19:32:12 -04:00
James Agnew
a3ff08d9ec
Replace phloc with ph for #775 (#930) 
* Replace phloc with ph

* Enable schematron tests

* Make HAPI-FHIR ph-schematron on OSGI

* Work on getting tests passing

* Another test fix

* Fix up transaction handling for DSTU2

* Add changelog

* Avoid double transaction

* Dont use readonly

* One more test fix

* Update to snapshow build

* Resolve a circular dependency

* Try to fix tests

* Solve recurring NPE in DSTU2 tests

* Fix one more test

* Test fix

* More test threading fixes

* One more attempt to get tests passing

* Refactoring for tests

* Refactoring for tests
 2018-05-14 17:38:40 -04:00
jamesagnew
ccb859fdbe FIxes to get the synced build working 2018-05-13 08:08:34 -04:00
jamesagnew
150f27a9ca Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-05-12 19:40:31 -04:00
jamesagnew
3d762b984b Sync to R4 definitions 2018-05-12 19:35:42 -04:00
James Agnew
f1ba0016b2 Improve the error message thrown by JPA server 2018-05-11 17:03:48 -04:00
James Agnew
b17eebd8d2 Squashed commit of the following: 
commit 2be11651c212ede9d50956ba9d4a802885e9dbed
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:50:53 2018 -0400

    Update changelog

commit b3bb5f9052ecebce87588e2d5f5be983fbd0fd2e
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:19:28 2018 -0400

    Parameter updates

commit f6b1082ba46f4d0d47d3e0094e904d527b0ebf75
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 07:24:30 2018 -0400

    More test fixes

commit 81a69c265f7347f6a23c73b827c79a8a4051b21b
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:26:48 2018 -0400

    Fix compile error

commit 935938e92c697be1940b788a46c38ffd5ce84b84
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:25:18 2018 -0400

    Another test fix

commit 43568a1f8dd6325bebba2cd47ffb42bee7f12aa6
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:18:06 2018 -0400

    Fix compile error

commit e95894e643dda0a70ab5ab7be4363cae4ce5c4e6
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:13:50 2018 -0400

    More work on tests

commit 9393fb8f4f93e69f80293c0488cc16f74613f25c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 05:36:27 2018 -0400

    One more fix

commit 437f5051e4742eb500ec1eb1852e4c6105927c51
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 21:32:10 2018 -0400

    Work on validator

commit 20c51add4fbb5c33d7b5f8517fe9bf9a4f314292
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 19:34:10 2018 -0400

    Validator fix

commit 7bf2b0a0e93b71f6fbc46ab3b1dbd0fba6367959
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 18:44:04 2018 -0400

    Fix test

commit adc73e75c9b392ed964588f03970ab1afdb4cdef
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 17:22:34 2018 -0400

    Merge validator
 2018-05-10 11:53:32 -04:00
Diederik Muylwyk
d97fb8f5cf
709 the conceptmap operation called translate needs to be implemented (#923) 
The ConceptMap operation $translate has been implemented.
 2018-05-10 10:52:56 -04:00
jamesagnew
5bd191d192 FIx some failing tests 2018-04-28 13:21:48 -04:00
James Agnew
593a705365 Performance enhancements on the CapabilityStatement generator for JPA 
server
 2018-04-28 11:06:42 -04:00
jamesagnew
e299b062a6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-04-24 19:14:56 -04:00
jamesagnew
f1db751d1e Update headers 2018-04-24 19:14:33 -04:00
James Agnew
09b1f547d0 Add expunge 2018-04-24 15:11:00 -04:00
James Agnew
07e7af746f Work on expunge operation 2018-04-22 22:03:23 -04:00
James Agnew
591539cf13 Add expunge method 2018-04-22 18:34:56 -04:00
jamesagnew
8c889267e5 One more parser fix 2018-04-18 06:20:11 -04:00
James Agnew
162069776a Correctly handle encoding contained resources where some have user 
assigned IDs and some do not
 2018-04-17 18:26:06 -04:00
jamesagnew
9013e44ba0 Fix a couple of broken compile issues 2018-03-31 06:08:49 -04:00
Clayton Bodendein
ac8e412e49 Fixes #911 - Adds support for :contains modifier 
Adds support for the :contains modifier in StringClientParam.
 2018-03-30 23:49:06 -05:00
jamesagnew
180336e076 Sync to master 2018-03-29 06:54:24 -04:00
jamesagnew
53c2d8a38d Merge branch 'master' into loinc_loader_update 2018-03-29 06:21:55 -04:00
jamesagnew
418e82032f Prep for 3.3.0 2018-03-29 05:48:13 -04:00
jamesagnew
94b880fd4d Remove accidentally committed useless file 2018-03-28 10:13:51 -04:00
James Agnew
b56d65ef5b
Merge pull request #871 from johnpoth/hapi-fhir-osgi 
Implement #826 - add OSGI support and Apache Karaf features with inte…
 2018-03-27 06:06:34 -04:00
James Agnew
d9fcf1ef54
Merge pull request #864 from splatch/master 
Avoid unecessary reference to javassist.
 2018-03-23 06:49:59 -04:00
Łukasz Dywicki
9125a78f33 Avoid unecessary reference to javassist. 2018-03-20 15:39:33 +01:00
James Agnew
308ac63a77 Merge branch 'master' into loinc_loader_update 2018-03-20 07:53:41 -04:00
James Agnew
9c5e32d7eb Fix up some logging 2018-03-20 07:53:21 -04:00
James Agnew
6359f7f8a1 More work on loinc 2018-03-19 08:51:02 -04:00
James Agnew
6e2acd0689
Merge pull request #890 from jamesagnew/arglineFix 
changed in *.pom: ${argLine} -> @{argLine}
 2018-03-19 05:55:54 -04:00
jamesagnew
4578b3889f Allow for locale differences in StopwatchTest 2018-03-19 05:54:12 -04:00
patrick-werner
ff04ab3358 ${argLine} -> [at]{argLine} 
see:
http://maven.apache.org/surefire/maven-surefire-plugin/faq.html#late-property-evaluation
 2018-03-19 10:45:33 +01:00
James Agnew
142c4c6caa
Merge pull request #800 from InfiniteLoop90/issue-799-jaxrsrequest-fhir-version-support 
Fixes issue #799 by adding logic to handle the R4 and DSTU2_1 contexts in ca.uhn.fhir.jaxrs.server.util.JaxRsRequest.
 2018-03-19 05:41:20 -04:00
James Agnew
60354a4cc8
Merge branch 'master' into master 2018-03-12 07:41:22 -03:00
James Agnew
cb2f5a0bba
Merge pull request #786 from CarthageKing/bugfix-chaining-urlvalue 
ensure to use resourceType properly when it is explicitly provided in a chained reference param
 2018-03-12 07:32:27 -03:00
jamesagnew
30cd63b929 More loinc work 2018-03-11 19:11:31 -04:00
James Agnew
5a653aeb20 Work on loinc mapping 2018-03-10 20:31:27 -03:00
James Agnew
611ee457cb Lots of addition of loinc 2018-03-07 13:33:49 -03:00
James Agnew
e31aa760dd Fix stopwatch ETA calculations 2018-03-05 19:06:05 -05:00
Ruth Alkema
fee70b1a7a Fix error in narrative for CodeableConcept 2018-03-05 16:27:07 +01:00
jamesagnew
e201091e3a Update licenses for changed files 2018-03-04 13:53:04 -05:00
James Agnew
2f7751a079 Move stopwatch into hapi-fhir-base and add timing into to client 
LoggingInterceptor
 2018-03-04 12:13:18 -05:00