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5384 Commits

Author SHA1 Message Date
David Maplesden 5120fe795e Dramatically improve the performance of containResourcesForEncoding 
We do this by avoiding the double processing of contained resources when
looking for resources to contain
 2019-09-19 20:38:30 -04:00
jamesagnew 6475146bc9 Add license headers 2019-09-19 18:08:21 -04:00
James Agnew eddb98084d Move PreferReturnEnum back to original location to avoid regressions 2019-09-19 15:48:58 -04:00
James Agnew 6fde2879ef Fix one more intermittent test 2019-09-19 14:53:29 -04:00
James Agnew 47805bceff Test fixes 2019-09-19 14:42:27 -04:00
James Agnew a5a0fca065 Test fixes 2019-09-19 11:33:33 -04:00
James Agnew 4115a4bb6d Compile fixes 2019-09-19 10:10:47 -04:00
James Agnew 2be63a1650 Test fixes 2019-09-19 09:45:07 -04:00
jamesagnew 170698562a Bump to current org.hl7.fhir.core 2019-09-19 08:11:30 -04:00
James Agnew 30dfde645b Upgrade to Fontawesdome 5 and prevent uploading resources with binary 
storage extensions
 2019-09-19 05:28:05 -04:00
James Agnew 6b21e8cd90 Add some testing to the bulk export service 2019-09-18 14:43:00 -04:00
James Agnew 5e74a6f3e8 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-17 16:01:53 -04:00
James Agnew 4a751cbfc5
Integrate Bulk Export (#1487) 
* Start working on subscription processor

* Work on new scheduler

* Test fixes

* Scheduler refactoring

* Fix test failure

* One more test fix

* Updates to scheduler

* More scheduler work

* Tests now all passing

* Ongoing work on export

* Ongoing scheduler work

* Ongoing testing

* Work on export task

* Sync master

* Ongoing work

* Bump xml patch version

* Work on provider

* Work on bulk

* Work on export scheduler

* More test fies

* More test fixes

* Compile fix

* Reduce logging

* Improve logging

* Reuse bulk export jobs

* Export provider

* Improve logging in bulk export

* Work on bulk export service

* One more bugfix

* Ongoing work on Bulk Data

* Add changelog
 2019-09-17 16:01:35 -04:00
James Agnew d3c8962ae6 Add some tests 2019-09-17 14:04:35 -04:00
James Agnew 2cfa08f179 Add test case 2019-09-17 11:13:57 -04:00
James Agnew 882e0853df Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-16 15:55:49 -04:00
James Agnew 38cf830384 Accurately reflect codesystem URL 2019-09-16 15:55:32 -04:00
Diederik Muylwyk 1704d3d083
Merge pull request #1485 from jamesagnew/dm-additional-enhancements-for-loinc-terminology 
Resolve "Additional Enhancements for LOINC terminology"
 2019-09-16 12:00:35 -04:00
Diederik Muylwyk 3a9342913c Address review comments. Added tests. 2019-09-16 11:54:34 -04:00
Diederik Muylwyk b05c5f3f71 Implement the parent and child filters for LOINC. #1453 2019-09-15 21:52:33 -04:00
James Agnew 9997b02506 Add support for R5 in the terstpage overlay 2019-09-14 11:51:09 -04:00
Diederik Muylwyk 9b1af6b207 Implement both a copyright property and a copyright filter for LOINC. #1451 2019-09-13 16:18:51 -04:00
Diederik Muylwyk 678d58ab90 Only manually add EXTERNAL_COPYRIGHT_NOTICE to LOINC uploader if it doesn't already exist in loinc.xml 2019-09-13 11:57:19 -04:00
Diederik Muylwyk 75ddba7f2d Add EXTERNAL_COPYRIGHT_NOTICE property for LOINC uploader. 2019-09-13 11:49:01 -04:00
James Agnew 08835c1615 FIx a failure in FhirTerser when visiting custom types 2019-09-13 09:11:47 -04:00
Tuomo Ala-Vannesluoma 2c3283fd34
Add test for search method binding matching 2019-09-12 13:36:56 +03:00
James Agnew 0831feb2c3 Bump xml patch version 2019-09-11 17:33:31 -04:00
jamesagnew cfdb3b222e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-11 08:29:13 -04:00
Diederik Muylwyk 7dce29b86e
Merge pull request #1468 from jamesagnew/dm-more-performance-tuning-on-valueset-expansion 
More performance tuning on ValueSet expansion.
 2019-09-10 17:57:13 -04:00
Diederik Muylwyk 65e029458c Test fixes. 2019-09-10 17:50:49 -04:00
Diederik Muylwyk d4feb5d0b1 Final cleanup before review. 2019-09-10 14:21:42 -04:00
jamesagnew ea49692106 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-10 13:45:49 -04:00
jamesagnew c7ec9601fd Bump core version 2019-09-10 13:32:59 -04:00
James Agnew 5020cef56b
Merge pull request #1480 from jamesagnew/ks-in-memory-date-compare 
%now and in-memory date compare
 2019-09-10 13:25:51 -04:00
James Agnew 9420bca341
Merge branch 'master' into ks-in-memory-date-compare 2019-09-10 13:25:29 -04:00
Diederik Muylwyk 57d4cc23ee More bug-hunting. DSTU3 was missing a null check. 2019-09-10 11:56:07 -04:00
James Agnew 0843a2b02d Avoid leaking details when canSeeReource rejects a resource from consent 
service
 2019-09-10 11:14:44 -04:00
Ken Stevens c974e9283b added search % now test 2019-09-10 10:11:09 -04:00
Diederik Muylwyk 67d24eedff Merging master into working branch. 
# Conflicts:
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/TermValueSetConceptDesignation.java
#	hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
 2019-09-09 19:01:29 -04:00
Diederik Muylwyk dbe5a36f26 Reset schedule for pre-expansions. Ready for review. 2019-09-09 18:44:25 -04:00
Diederik Muylwyk 7e76c1893f Fixed bug for large ValueSet expansion with URL parameter; return 404 for unknown ValueSets. 2019-09-09 18:41:00 -04:00
James Agnew 2052df3152 Error with a 404 on invalid valueset 2019-09-09 18:01:41 -04:00
Ken Stevens 42a9672cc2 fix test 2019-09-09 17:36:57 -04:00
Diederik Muylwyk 19676a01b7 Incremental progress on large ValueSet expansion with URL parameter. 2019-09-09 17:24:01 -04:00
Ken Stevens de7e2a0a93 GraphQL Imports 2019-09-09 17:23:03 -04:00
Ken Stevens abef4455eb done 2019-09-09 17:22:07 -04:00
Ken Stevens 98ed9b8cbb Merge remote-tracking branch 'remotes/origin/master' into ks-in-memory-date-compare 2019-09-09 15:24:55 -04:00
Diederik Muylwyk c82c3a093f Removing gaps from concept order when pre-expanding ValueSets. 2019-09-09 15:24:37 -04:00
jamesagnew 95e75d0a7d Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-09 15:02:55 -04:00
James Agnew 7e41951508 Create utility method for accessing the reqyest detail 2019-09-09 15:02:12 -04:00