6650 Commits

Author SHA1 Message Date
ianmarshall
6a5c23c36b Adding a proposed change log. 2020-05-22 13:45:17 -04:00
ianmarshall
b501a601b7 Some final cleanup minor updates. 2020-05-22 13:36:08 -04:00
ianmarshall
a60e5809b2 Changes to enable adjusting limits on delete conflict handling through configuration. 2020-05-22 10:15:04 -04:00
jamesagnew
e22549e0c4 Bump MySQL JDBC driver version 2020-05-21 21:21:13 -04:00
jamesagnew
5ba7f1525f Test fix 2020-05-21 20:38:11 -04:00
jamesagnew
8ff7d5407a Bump core version 2020-05-21 19:22:28 -04:00
Ken Stevens
2360ed4abe
fix build (#1861) 2020-05-21 19:22:08 -04:00
James Agnew
63ff0ede9c
Make diff operation work securely (#1859)
* Make diff operation work securely

* Build tweak

* FIx tests
2020-05-21 19:20:48 -04:00
James Agnew
ce5ade53d9
Fix #1855 - StructureDefinition search not working (#1858) 2020-05-21 09:35:37 -04:00
James Agnew
e07e071130
Avoid deserialization issues in subscription delivery (#1856)
* Avoid deserialization issues in subscription delivery

* Add changelog
2020-05-21 05:47:39 -04:00
James Agnew
5b2181a563
Implement FHIR Patch (#1850)
* Start working on FHIRPatch

* More work on fhirpatch

* Work on FHIR Patch

* Add patch

* Test fixes

* Test fixes

* Get tests fixed

* Chnage to trigger a build

* Compile fix

* Dependency version fixes

* Test fix

* COmpile fix

* Try to fix build

* Test fix attempt

* Another build attempt

* Another build tweak

* Cleanup
2020-05-20 19:43:55 -04:00
jamesagnew
b044d05332 Add a disabled test 2020-05-20 17:26:24 -04:00
James Agnew
9aaf5ccd63
Fix expunge when using unique search param (#1854)
* Fix expunge when using unique search param

* Add chaneglog
2020-05-20 15:58:53 -04:00
jamesagnew
8ab80e3529 Credit for #1853 2020-05-20 10:54:38 -04:00
Tue Toft Nørgård
2f48c7d7fe
Make @Interceptor @Inherited so InterceptorService.determineOrder accepts Spring proxies of @Interceptor annotated classes. (#1853)
See https://groups.google.com/forum/#!topic/hapi-fhir/7Z_FKDBTJSE
2020-05-20 10:52:56 -04:00
James Agnew
c9c90b327c
Allow no read interceptor for partition (#1851)
* Allow no read interceptor for partition

* Add changelog

* Test fix
2020-05-19 17:06:56 -04:00
ianmarshall
645a0d3681 Removing extra file that was mistakenly committed. 2020-05-19 16:37:40 -04:00
ianmarshall
3b7f106052 Fixed latest merge conflicts. 2020-05-19 16:34:05 -04:00
ianmarshall
d2b54d6203 Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
# Conflicts:
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/SearchBuilder.java
2020-05-19 15:20:06 -04:00
ianmarshall
6a27192a96 Fixed sorting with chunked and paged queries. 2020-05-19 14:48:26 -04:00
jamesagnew
f3c023bb6f Tweak to test data builder 2020-05-19 09:18:59 -04:00
jamesagnew
cc92bd7b07 Revert "Start working on FHIRPatch"
This reverts commit b3f6e7d521c1451186fb180db6d8538e9f5dfcd8.
2020-05-17 11:56:50 -04:00
jamesagnew
b3f6e7d521 Start working on FHIRPatch 2020-05-17 11:44:06 -04:00
jamesagnew
52c8e3551c Version bump to 5.1.0-SNAPSHOT 2020-05-15 14:43:32 -04:00
jamesagnew
b46f4a993d One more fix for 5.0.1 v5.0.1 2020-05-15 09:58:45 -04:00
jamesagnew
fe0e07a313 Bump to 5.0.1 2020-05-15 05:47:01 -04:00
jamesagnew
9b1cd6cd5c Add changelog 2020-05-15 05:45:01 -04:00
Tadgh
9fec726b0e
Add missing indexes on ResourceIndexedSearchParamDate (#1847)
* Add migration tasks for new indexes. Add new indexes to ResourceIndexedSearchParamDate

* fix dates on task, remove redundant index

* Today is not the 20th

* Fix incorrectly named migration indexes

* out of order indexes
2020-05-15 05:38:16 -04:00
James Agnew
79a064dfd9
Optimize chain sql paths (#1844)
* Start cleanup

* Almost workinf

* Possibly working!!

* Fixes

* Test fix

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/predicate/querystack/QueryRootStack.java

Co-authored-by: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/predicate/querystack/QueryRootStack.java

Co-authored-by: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/predicate/querystack/QueryRootStack.java

Co-authored-by: Ken Stevens <khstevens@gmail.com>

* Address review comments

* Add changelog

Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-05-15 05:36:12 -04:00
ianmarshall
529e1e1f5e Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch 2020-05-14 12:09:24 -04:00
ianmarshall
eb1d1c2b27 Changes to better support chunking of queries and paging of results for lastn operation and to monitor performance. 2020-05-14 12:08:55 -04:00
jamesagnew
8a360ebd5b Fix version enum 2020-05-12 20:16:21 -04:00
jamesagnew
1d13e29ac0 Version bump to 5.1.0-SNAPSHOT 2020-05-12 20:04:20 -04:00
jamesagnew
d631ecff4a Prepare for 5.0.0 v5.0.0 2020-05-12 11:49:18 -04:00
jamesagnew
c7da4b0914 Build Cleanup 2020-05-11 13:25:58 -04:00
James Agnew
0c13a65871
Bump to latest Core version (#1841)
* Start working on bumping core

* Work on tests

* Work on tests

* Bump core definitions

* Bump R5 defs

* Tweak changelog

* Test fix
2020-05-11 12:37:16 -04:00
jamesagnew
386f395e4b Version bump 2 dependencies 2020-05-10 19:10:18 -04:00
jamesagnew
5ea94abde5 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2020-05-10 12:10:03 -04:00
jamesagnew
034e878a6f Add NOP tasks for 4.3.0 to avoid migrator issues 2020-05-10 12:09:47 -04:00
James Agnew
9d8bd0d51e
Bump R4 definitions to 4.0.1 (#1837)
* Bump R4 definitions to 4.0.1

* Add changelog

* Test fixes
2020-05-08 19:34:13 -04:00
jamesagnew
7f12f80358 Docs correction 2020-05-08 11:48:26 -04:00
ianmarshall
8fcdc78077 Fix issues resulting from latest merge. 2020-05-08 09:31:05 -04:00
ianmarshall
e56cb049f7 Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch 2020-05-08 09:19:44 -04:00
ianmarshall
c290fa3493 Fixes to enable $lastn to return more than 32K records. 2020-05-08 09:19:14 -04:00
jamesagnew
78fa296f1f License header updates 2020-05-07 19:37:16 -04:00
James Agnew
6cc07b6689
Make binary storage work for bulk export (#1836)
* Make binary storage work for bulk export

* Add changelog

* Build fixes

* Test fix

* Test fix

* Test fix
2020-05-07 19:20:22 -04:00
James Agnew
b67509d7ff
Transaction write performance fix (#1832)
* Performance fix for transactions

* Test fix

* Fixes

* Add docs

* Test fixes
2020-05-07 10:56:41 -04:00
Simon Yun
e874abad47 Add Grand Rounds to HAPI FHIR Atlas 2020-05-06 13:47:26 -07:00
ianmarshall
1e882d640d Merging with latest from Master. 2020-05-05 17:35:22 -04:00
ianmarshall
4cced40b54 Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
# Conflicts:
#	hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
2020-05-05 17:19:32 -04:00