63ff0ede9c
Make diff operation work securely ( #1859 )
...
* Make diff operation work securely
* Build tweak
* FIx tests
2020-05-21 19:20:48 -04:00
ce5ade53d9
Fix #1855 - StructureDefinition search not working ( #1858 )
2020-05-21 09:35:37 -04:00
5b2181a563
Implement FHIR Patch ( #1850 )
...
* Start working on FHIRPatch
* More work on fhirpatch
* Work on FHIR Patch
* Add patch
* Test fixes
* Test fixes
* Get tests fixed
* Chnage to trigger a build
* Compile fix
* Dependency version fixes
* Test fix
* COmpile fix
* Try to fix build
* Test fix attempt
* Another build attempt
* Another build tweak
* Cleanup
2020-05-20 19:43:55 -04:00
b044d05332
Add a disabled test
2020-05-20 17:26:24 -04:00
9aaf5ccd63
Fix expunge when using unique search param ( #1854 )
...
* Fix expunge when using unique search param
* Add chaneglog
2020-05-20 15:58:53 -04:00
c9c90b327c
Allow no read interceptor for partition ( #1851 )
...
* Allow no read interceptor for partition
* Add changelog
* Test fix
2020-05-19 17:06:56 -04:00
3b7f106052
Fixed latest merge conflicts.
2020-05-19 16:34:05 -04:00
d2b54d6203
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/SearchBuilder.java
2020-05-19 15:20:06 -04:00
6a27192a96
Fixed sorting with chunked and paged queries.
2020-05-19 14:48:26 -04:00
cc92bd7b07
Revert "Start working on FHIRPatch"
...
This reverts commit b3f6e7d521
2020-05-17 11:56:50 -04:00
b3f6e7d521
Start working on FHIRPatch
2020-05-17 11:44:06 -04:00
52c8e3551c
Version bump to 5.1.0-SNAPSHOT
2020-05-15 14:43:32 -04:00
fe0e07a313
Bump to 5.0.1
2020-05-15 05:47:01 -04:00
79a064dfd9
Optimize chain sql paths ( #1844 )
...
* Start cleanup
* Almost workinf
* Possibly working!!
* Fixes
* Test fix
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/predicate/querystack/QueryRootStack.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/predicate/querystack/QueryRootStack.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/predicate/querystack/QueryRootStack.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Address review comments
* Add changelog
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-05-15 05:36:12 -04:00
529e1e1f5e
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
2020-05-14 12:09:24 -04:00
eb1d1c2b27
Changes to better support chunking of queries and paging of results for lastn operation and to monitor performance.
2020-05-14 12:08:55 -04:00
1d13e29ac0
Version bump to 5.1.0-SNAPSHOT
2020-05-12 20:04:20 -04:00
d631ecff4a
Prepare for 5.0.0
2020-05-12 11:49:18 -04:00
0c13a65871
Bump to latest Core version ( #1841 )
...
* Start working on bumping core
* Work on tests
* Work on tests
* Bump core definitions
* Bump R5 defs
* Tweak changelog
* Test fix
2020-05-11 12:37:16 -04:00
9d8bd0d51e
Bump R4 definitions to 4.0.1 ( #1837 )
...
* Bump R4 definitions to 4.0.1
* Add changelog
* Test fixes
2020-05-08 19:34:13 -04:00
8fcdc78077
Fix issues resulting from latest merge.
2020-05-08 09:31:05 -04:00
e56cb049f7
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
2020-05-08 09:19:44 -04:00
c290fa3493
Fixes to enable $lastn to return more than 32K records.
2020-05-08 09:19:14 -04:00
6cc07b6689
Make binary storage work for bulk export ( #1836 )
...
* Make binary storage work for bulk export
* Add changelog
* Build fixes
* Test fix
* Test fix
* Test fix
2020-05-07 19:20:22 -04:00
b67509d7ff
Transaction write performance fix ( #1832 )
...
* Performance fix for transactions
* Test fix
* Fixes
* Add docs
* Test fixes
2020-05-07 10:56:41 -04:00
4cced40b54
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
2020-05-05 17:19:32 -04:00
4db5beeabf
Additional changes to enable processing of lastn operations with large numbers of parameters.
2020-05-05 16:53:47 -04:00
a77aa6a28e
Multitenancy Ticket 2 - #1813 ( #1821 )
...
* Work on multitenancy
* Second ticket started
* More multitenancy work
* Work on tenancy security
* Work on multitenancy
* Test fixes
* Add docs
* cs tweak
* Multitenancy fixes
* Add debug log
* Fix build
* Add headers
* Add partition selection interceptor hook
* Update hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/api/Constants.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Account for review comments
* Resolve FIXMES
* Work on tests
* Test fixes
* A bit more cleanup
* Work on multitenancy
* Update hapi-fhir-docs/src/main/java/ca/uhn/hapi/fhir/docs/ClientExamples.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/client/examples.md
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Address review comments
* Allow disabling text modifier indexing
* Add changelog
* Docs fixes
* Address review comment
* Resolve merge conflicts
* Merge master
* Compile fix
* Test fix
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-05-05 15:12:15 -04:00
35c2b7a2c1
Allow disabling text modifier indexing ( #1831 )
...
* Allow disabling text modifier indexing
* Add changelog
* Address review comment
* Resolve merge conflicts
2020-05-05 12:16:55 -04:00
dada217966
Clean up hash code calculation ( #1830 )
...
* Clean up hash code calculation
* Test fixes
* Test fix
* Test fixes
* Compile fix
* Test fix
2020-05-05 11:11:24 -04:00
91147cf6b0
Scope tag search to correct resource type ( #1829 )
...
* failing _tag tests
* cleanup
* Scope tag query to correct resource type
* Changelog
* Test fix
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-05-05 11:09:46 -04:00
41056092ed
License header updates
2020-04-30 18:24:07 -04:00
8f8a8a3dc2
Merge branch 'master' into date-match-bug
2020-04-29 16:17:50 -07:00
e439891ea2
Add test
2020-04-29 15:21:54 -04:00
3e49e5615f
Fixing merge conflicts after merge from Master.
2020-04-25 22:14:55 -04:00
dd749791db
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
2020-04-24 16:55:45 -04:00
0e45db0ba9
More cleanup and test fixes.
2020-04-24 16:23:59 -04:00
e219c1774b
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2020-04-24 05:45:26 -04:00
ededcc18d2
Add Partitioning / Multitenancy ( #1807 )
...
* Work on multitenancy
* Work on multitenancy
* Work on multitenancy
* Add columns
* Work on multitenancy
* Work on muiltitenancy
* Work on multitenancy
* Work on uniques
* Work on multitenancy
* Work on multitenancy
* Work on multitenancy
* More work on multitenancy
* Work on multitenancy
* Multitenancy work
* Work on multitenancy
* Work on multitenancy
* Work on multitenancy
* Work on multitenancy
* Work on docs
* Work on multitenancy
* Work on docs
* DOcs work
* Tenancy docs
* Work on docs
* Finish docs
* Add changelog
* Rename config
* Add migration tasks
* Fix typo
* Migration fix
* One more migration fix
* A couple more migration fixes
* Docs cleanup
* Work on docs
* Bump boot version
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Work on review comments
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/schema.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/index/IdHelperService.java
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Address review comments
* Compile fx
* Test fixes
* One more bugfix
* Update operation name
* Add one more constant
* Roll back a change that was causing test failures
* Test fixes
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-04-24 05:45:11 -04:00
197bf2b6a8
Further refinements and test fixes.
2020-04-23 23:21:45 -04:00
c994f48ccd
Add test case
2020-04-23 10:37:05 -04:00
5f88d87027
Tweak to #1801 - Normalize double leading zeros in database ( #1815 )
2020-04-23 09:44:08 -04:00
ccda668d0c
Restore subscription loading at startup
2020-04-23 05:28:56 -04:00
99b9ec0b1c
Fix compilation error
2020-04-22 09:57:52 -04:00
be5f8191dc
One more bugfix
2020-04-22 09:08:46 -04:00
8a2b799df0
Test fixes
2020-04-22 08:43:00 -04:00
009d6443f5
Compile fx
2020-04-21 21:34:15 -04:00
7efd8a9f6e
Merge branch 'ja_20200206_multitenancy' of github.com:jamesagnew/hapi-fhir into ja_20200206_multitenancy
2020-04-21 20:55:09 -04:00
6226381595
Merge branch 'master' into ja_20200206_multitenancy
2020-04-21 20:54:56 -04:00
1f37cdd8cf
Address review comments
2020-04-21 20:53:10 -04:00
cc2b7452be
Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/index/IdHelperService.java
...
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
2020-04-21 20:36:19 -04:00
c7de85339c
Work on review comments
2020-04-21 20:18:06 -04:00
f69fb1a39b
Set ES username and password only if they're not blank ( #1806 )
...
This is important for AWS-hosted ES, as it does not accept HTTP requests with Basic authentication (even if the username/passwords are blank). Skipping those settings in case they're blank solves the issue.
Co-authored-by: Maciej Kucharek <maciej@oraoncology.com>
2020-04-21 15:32:12 -04:00
3225075f9e
Fix GraphQL Error ( #1791 )
...
* add debug log
* add debug log to value iteration
* fix _filter issue on /$graphql, fix dash and underscore issue on /$graphql, and give helpful error message on wrong argument.
* remove debug logging
* implement JpaStorageServicesTest
2020-04-21 15:28:28 -04:00
c716216b34
Adjust return type for fluent delete() operation ( #1805 )
...
* Add cascading delete to client
* Add changelog
* Client delete should return MethodOutcome
* Rerturn more appropriate type for delete operations
* Refactor cascade detection to be reusable
2020-04-21 15:23:11 -04:00
998c1f7751
Work on docs
2020-04-21 14:32:41 -04:00
e6c806283e
Merge branch 'ja_20200206_multitenancy' of github.com:jamesagnew/hapi-fhir into ja_20200206_multitenancy
2020-04-20 16:58:59 -04:00
544d9fbc6c
Add migration tasks
2020-04-20 16:58:48 -04:00
bbab016ca6
Rename config
2020-04-20 12:38:04 -04:00
7248b4e18e
Finish docs
2020-04-20 11:02:27 -04:00
cd3e1c5e72
Tenancy docs
2020-04-19 10:15:51 -04:00
48057b9d8e
Merge branch 'master' into ja_20200206_multitenancy
2020-04-17 17:59:48 -04:00
540375a7eb
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
2020-04-17 17:39:27 -04:00
4a89860f9b
Additional tests and cleanup.
2020-04-17 17:38:42 -04:00
e0b419354f
Bump up hamcrest version and force the use of the latest version
2020-04-17 13:59:22 -04:00
497757501b
Improve search method binding priority ( #1802 )
...
* Work on search method binding priority
* Work on method priority
* Work on binding priority
* Test fixes
* Add changelog
* Test fixes
* compile fix
* One more comple fix
* Test cleanup
* Test fix
2020-04-17 09:28:33 -04:00
81723c30d8
Work on multitenancy
2020-04-16 15:52:15 -04:00
25cdbb15c2
Work on multitenancy
2020-04-16 15:33:48 -04:00
8873749d9c
Add license headers
2020-04-16 10:06:56 -04:00
cd06137745
Work on multitenancy
2020-04-15 22:12:28 -04:00
d822867a4a
Merge branch 'master' into ja_20200206_multitenancy
2020-04-15 22:12:20 -04:00
f95f619bdc
Correct two JPA processing bugs ( #1801 )
...
* Work on search params on contained
* Add workaround for stored decimals with leading decimal point
* Add changelog
* Cleanup
* Test fix
* Test fix
* One more test fix
2020-04-15 14:22:47 -04:00
d03ce6533e
Fixed conflicts after merging latest from Master.
2020-04-13 20:01:34 -04:00
925bbbbcdc
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-cli/hapi-fhir-cli-api/src/main/java/ca/uhn/fhir/cli/RunServerCommand.java
# hapi-fhir-cli/hapi-fhir-cli-jpaserver/src/main/java/ca/uhn/fhir/jpa/demo/CommonConfig.java
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/dstu3/BaseDstu3Config.java
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/r4/BaseR4Config.java
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/r5/BaseR5Config.java
# pom.xml
2020-04-13 18:35:15 -04:00
0f9bdbd3af
Undid previous re-factoring and fixed a bug introduced in last commit.
2020-04-13 16:14:38 -04:00
982b54df57
Work on multitenancy
2020-04-13 11:50:49 -04:00
f2fa8659c4
Test fix
2020-04-13 09:35:51 -04:00
af11763dee
Fixes to command line tool, clean-up and minor re-factoring.
2020-04-13 08:56:56 -04:00
c26a5553e9
Multitenancy work
2020-04-12 20:47:32 -04:00
e55ccf88fc
Work on multitenancy
2020-04-10 20:01:59 -04:00
e64d67f429
Consolidate changes to Command Line Tool and add/improve tests.
2020-04-10 16:58:00 -04:00
8d8c657ce2
More work on multitenancy
2020-04-10 13:05:17 -04:00
219332e9e3
Work on multitenancy
2020-04-10 11:11:29 -04:00
e0fcbe1df2
Merge branch 'master' into ja_20200206_multitenancy
2020-04-09 11:52:27 -04:00
8cdc3a72ce
Fix #1794 - Client ID and Server ID mode clash ( #1795 )
...
* Fix #1794 - Client ID and Server ID mode clash
* Try to track down intermittent test failure
2020-04-09 09:31:13 -04:00
96a4eff38e
Test fix
2020-04-08 19:54:54 -04:00
1c738b903d
Decouple subscription submission / matching ( #1790 )
...
* Start work on subscription cleanup
* Work on subscription cleanup
* Work on subscriptions
* Subscription cleanup
* More work on subscriptions
* Queue factory cleanup
* Work on subscription cleanup
* Subscription cleanup
* Work on subscription cleanup
* Work on subscription cleanup
* Work on subscription cleanup
* Ongoing cleanup
* Subscription work
* Tests passing
* Move resource provider factory
* Test fixes
* Address review changes
* One more change
* Test fixes
2020-04-08 18:08:27 -04:00
edc30568f2
Address review changes
2020-04-07 19:07:07 -04:00
35e1dbae32
One more bugfix on #1772
2020-04-07 15:22:59 -04:00
c2e00bb73b
Bugfix on #1772
2020-04-07 14:21:42 -04:00
47786660d5
Test fixes
2020-04-07 13:58:24 -04:00
2205d2306c
Move resource provider factory
2020-04-07 10:56:05 -04:00
347ecc7d51
Tests passing
2020-04-07 09:39:14 -04:00
826ba6458a
Subscription work
2020-04-06 20:15:41 -04:00
b78205c218
Ongoing cleanup
2020-04-06 17:00:45 -04:00
40d0c27ae3
Work on subscription cleanup
2020-04-05 18:43:27 -04:00
0a28c0c060
Work on subscription cleanup
2020-04-05 07:21:05 -04:00
79da1578cb
Subscription cleanup
2020-04-04 20:04:32 -04:00
fef447afee
Work on subscription cleanup
2020-04-04 16:07:01 -04:00
83e673e725
Consolidate changes to Command Line Tool and add/improve tests.
2020-04-03 17:12:04 -04:00
7c6024fa14
More work on subscriptions
2020-04-03 07:43:21 -04:00
43b4d8e0e3
Work on subscriptions
2020-04-02 21:15:07 -04:00
6baf1995c9
Work on subscription cleanup
2020-04-02 20:30:19 -04:00
e1142f4043
Start work on subscription cleanup
2020-04-02 05:31:12 -04:00
f819c91530
Initial implementation of lastn operation.
2020-03-31 21:55:57 -04:00
f891634341
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
2020-03-31 13:30:28 -04:00
ea1f35beaa
Work on multitenancy
2020-03-31 10:33:47 -04:00
c4bd1a97fd
Add test
2020-03-30 11:54:27 -04:00
2e43c57032
Work on multitenancy
2020-03-30 09:49:17 -04:00
8e714b6b14
Work on uniques
2020-03-30 05:36:24 -04:00
62d867902f
Work on multitenancy
2020-03-29 18:16:04 -04:00
691f2c4e9a
Work on muiltitenancy
2020-03-29 13:35:20 -04:00
9df4c58122
Work on multitenancy
2020-03-27 09:22:00 -04:00
ec6fe70acb
Merge branch 'master' into ja_20200206_multitenancy
2020-03-27 05:50:08 -04:00
83fde61846
Initial commit of changes to support $lastn operation.
2020-03-25 18:02:57 -04:00
4e4c8dbd9a
Initial commit of changes to support $lastn operation.
2020-03-25 18:02:13 -04:00
718c248c69
Test fix
2020-03-24 07:55:25 -04:00
13f0e5384b
Address review comments
2020-03-24 06:02:55 -04:00
0ac434ea5d
Add chain on _type parameter
2020-03-23 17:53:30 -04:00
14316147c5
Resolve some docs issues
2020-03-23 10:34:12 -04:00
3f20f7b67f
Make SubscriptionDeliveryHandlerFactory not abstract
2020-03-22 21:01:19 -04:00
a5257f0fa8
Add new indexing extractor method
2020-03-19 20:22:30 -04:00
bde7c356fe
Implement Jackson parser/serializer ( #1733 )
...
* [dev] Integration of a Jackson serializer and deserializer - first stage
* [fix] Fixed some serializing issues
[improve] Improved the processing, removed the loggers
* [clean] Removed the JacksonSerializer class, replaced all the Gson classes with Jackson classes
* [clean] Small cleanup
* [improve] Throw a ConfigurationException if the JsonGenerator cannot be created
* [improve] Use the ObjectMapper's `readTree` instead of `readValue`
* [dev] Latest fixes and improvements
* [dev] Use the Jackson serializer
* [clean] Removed the ObjectMapper configuration, for now
* [fix] Use the GsonStructure also for the parsing of a FHIR resource
* [clean] Removed the LinkedList usage
* Work on preparing for merge of #1673
* Resolve build errors
* Work on parser integration
* Tests passing
* Resolve fixme
* CLeanup
* Fix dependency
Co-authored-by: Bogdan Solga <bogdan.solga@gmail.com>
2020-03-17 17:27:26 -04:00
4583cb9939
Merge pull request #1760 from jamesagnew/bugfix/1752-support-chained-parameters-inside-reverse-chained-parameter
...
Bugfix/1752 support chained parameters inside reverse chained parameter
2020-03-17 13:27:20 -07:00
4c1bbd01cb
Intermittent test fix
2020-03-17 14:19:36 -04:00
3eb09b15f0
Merge branch 'master' into bugfix/1752-support-chained-parameters-inside-reverse-chained-parameter
2020-03-17 10:32:43 -07:00
22413911bf
Validation api changes ( #1719 )
...
* Validation enhancements
* Work on validation api reworking
* Keep working on validation API
* Keep working on new term API
* Work on validation api
* Ongoing work on validation
* Work on integrating validation
* Work on validation API
* Add to validation API
* Work on validation
* Work on API
* Work on validation
* Work on validation API
* Work on validation API
* Work on validation api
* Work on validation API
* Work on validation api
* Validation API changes
* Work on API
* More work on validationo API
* Work on validation API
* FIxes
* WOrk on validation api
* Work on validation API
* Tests passing!
* More cleanup
* More validation API changes
* Fix intermittent test failure
* Package reorg
* Validation API work
* Work on doocumentation
* Work on API
* More work on new validation API
* Fix errorprone-reported error
* Test fixes
* Documentation updates
* Documentation tweaks
* Work on API
* Bean name adjustments
* Build fixes
* Some test fixes
2020-03-17 13:28:59 -04:00
9305bef4ef
Remove useless migrator task generics ( #1687 )
...
* Remove useless migrator task generics
* Clean a couple of compile errors
* Try to fix intermittent
2020-03-17 13:28:43 -04:00
288abe4504
Improve efficiency in search deleting ( #1759 )
...
* Improve efficiency in search deleting
* Changelog
* Address review comments
2020-03-17 12:33:38 -04:00
5867d62d62
Avoid duplicate predicate in _id queries ( #1761 )
...
* Avoid duplicate predicate in _id queries
* Add changelog
* Change to trigger CI
* Address review comments
2020-03-17 11:12:58 -04:00
6f872ffb51
Minor refactor
2020-03-13 19:15:46 -07:00
a39ac886af
Fix error while resolving rebase
2020-03-13 18:43:43 -07:00
4777d75e6b
Merge branch 'master' into bugfix/1752-support-chained-parameters-inside-reverse-chained-parameter
2020-03-13 18:40:11 -07:00
b80e71773d
Tidy, fix up tests
2020-03-13 18:36:43 -07:00
d91cb7524c
Fix up whitespace
2020-03-13 15:30:49 -07:00
03567c5831
Add perftrace. Remove regex
2020-03-13 15:29:48 -07:00
6b019492fe
Merge pull request #1758 from jamesagnew/ks-20200312-json-annotation
...
moved common Json annotations out into an interface
2020-03-13 15:58:21 -04:00
74fd2c1519
wip
2020-03-13 11:28:44 -07:00
72b9d9a350
FIx spelling mistake
2020-03-13 09:19:45 -04:00
1dc5d89013
Optmize forced ID resolution ( #1754 )
...
* Add forced ID caching
* Work on id optimization
* Test fixes
* More optimization work
* Add some docs
* Work on docs
* Test fixes
* Test fixes
* Test fixes
* Address review comments
* Compile fix
2020-03-12 17:12:50 -04:00
ecf5284c87
moved common Json annotations out into an interface
2020-03-12 13:36:34 -04:00
c3ceffbd72
wip
2020-03-09 16:05:41 -07:00
e38ec3e3dd
Fix typo
2020-03-09 14:57:53 -07:00
12412a7be9
Add query capturing to query
2020-03-09 13:58:59 -07:00
59d1603597
Some variable renaming. Adds some questions.
2020-03-09 13:51:47 -07:00
aca4bcfaad
Minor refactoring for readability
2020-03-06 14:22:31 -08:00
b299d0b63f
Fix Typos, reduce code duplication
...
* Change Two streams into one.
* Fix typos.
* Begin Writing docstrings
* Rename variables for clarity
2020-03-06 11:39:39 -08:00
0acfc51082
Split test into two tests, one of which passes, one of which fails, showing the missing functionality
2020-03-05 16:38:42 -08:00
58ee76549c
Merge branch 'master' into ja_20200206_multitenancy
2020-03-04 08:19:22 -05:00
9b37ba35d0
Merge pull request #1747 from jamesagnew/ks-20200303-bulk-export-filter
...
fixed a copy/paste error in bulk export with test
2020-03-03 19:54:26 -05:00
e819d40414
fix near searching for R4
2020-03-03 18:33:19 -05:00
a510543933
Fix log conditional
2020-03-03 14:03:55 -08:00
df7a9916c3
Swap from trace to info logging
2020-03-03 14:01:12 -08:00
d104fbdf7d
fixed a copy/paste error in bulk export with test
2020-03-03 16:40:31 -05:00
705735b9c0
review feedback: javadoc
2020-03-03 13:29:10 -05:00
5b5ef08500
Merge remote-tracking branch 'remotes/origin/master' into ks-20200302-near-chain
2020-03-03 09:44:52 -05:00
4a160a2df3
Merge branch 'master' into ja_20200206_multitenancy
2020-03-03 09:25:19 -05:00
58b5bd9664
Limit type on _has query ( #1743 )
...
* Limit type on _has query
* Add changelog
2020-03-03 08:28:38 -05:00
3c2c1dab2e
Error on missing profile validation ( #1742 )
...
* Error on missing profile validation
* Add changelog
* Test fixes
2020-03-03 08:28:26 -05:00
a56df03055
restrict near-distance extraction to DSTU3
2020-03-02 21:50:57 -05:00
4e1be80525
fixme
2020-03-02 21:39:28 -05:00
d1b54a9668
pre-review cleanup
2020-03-02 21:32:27 -05:00
27dcafe4f2
all but unit tests
2020-03-02 21:27:50 -05:00
24acb57f3b
began with failing test.
...
test now passes.
2020-03-02 17:56:25 -05:00
8d9119faef
Rework span name
2020-03-02 14:37:09 -08:00
6123e4b189
rework based on PR comments
2020-02-28 16:31:16 -05:00
ed7b9fc6b6
Initial attempt at integrating elastic APM for search performance
2020-02-28 16:09:16 -05:00
8c78e465b1
Defer large term delta adds ( #1736 )
...
* Defer large term delta adds
* Add changelog
2020-02-28 14:41:15 -05:00
5bc554949b
Remove deleted resources from cached search results ( #1732 )
...
* Remove deleted resources from cached search results
* Add changelog
* Add tests
2020-02-28 10:57:26 -05:00
f86a4c9fa1
Add date ordinals to subscription matching checker
2020-02-26 17:05:23 -05:00
2dc94de6bb
roll back change to inmemory matcher test
2020-02-26 14:31:35 -05:00
077f9df814
I keep finding more tests
2020-02-26 12:04:33 -05:00
a97443b1ed
Fix test failures. One caused by invalid test. One caused by granularity need LT not LTE
2020-02-26 11:12:27 -05:00
cb9906580e
Index canonical references ( #1728 )
...
* Index canonical references
* Add changelog
* Fix compile error
* Add whitespace
2020-02-25 21:45:46 -05:00
df9e86ec66
Merge branch 'master' into date-match-bug
2020-02-25 17:26:53 -05:00
b2b0ff22b4
Collapse date joins ( #1726 )
...
* Collapse date joins
* Add changelog
* Address review comments
* Add whitespace
* fix test
Co-authored-by: Ken Stevens <ken.stevens@sympatico.ca>
2020-02-25 17:17:13 -05:00
2204fbeabd
Adding some comments
2020-02-25 17:08:11 -05:00
1e833af5f0
Variable reuse
2020-02-25 17:06:38 -05:00
f56e38148b
Add flag to DaoConfig controlling behaviour
2020-02-25 16:43:17 -05:00
512af5b87d
Add changelog entry
2020-02-25 14:09:51 -05:00
da7224ff89
update broken test to reflect new reality of business logic of ordinal date comparison
2020-02-25 14:07:03 -05:00
3ec772b527
rework ResourceIndexedSearchParamDate constructor to support incoming string values
2020-02-25 14:06:36 -05:00
3b41b5b960
Type migration to boxed integer to avoid int defaulting to 0
2020-02-25 11:18:39 -05:00
34d5925393
Move common work to DateUtils. Rename function for clarity.
2020-02-25 09:37:57 -05:00
7f5b3394e0
Hacky first-pass of adding ordinal date field to ResourceIndexedSearchParamDate and using it for search
2020-02-24 19:34:16 -05:00
b33ad73d46
switch subscriptionchannelfactory to autowire
2020-02-24 14:28:14 -05:00
18d859281e
Merge remote-tracking branch 'remotes/origin/master' into date-match-bug
2020-02-24 11:47:43 -05:00
41b5eb2484
Switching cdrsubscribablefactory from @ComponentScan to @Bean
2020-02-23 15:43:30 -05:00
c0811376b7
Moved TranslateRawParameters method from BaseHapiFhirResourceDao to BaseStorageDao ( #1722 )
2020-02-20 10:52:43 -05:00
6200cd2ddc
Add test asserts
2020-02-19 21:21:22 -05:00
79ad0aebb5
Add a test
2020-02-19 18:01:35 -05:00
a05c4ce9eb
Don't thrash delta links ( #1721 )
...
* Don't thrash delta links
* Add changelog
* Remove commented out code
2020-02-19 17:46:54 -05:00
ab8dfa5a03
Avoid multi-term for ElasticSearch ( #1717 )
...
* Avoid multi-term for ElasticSearch
* Add changelog
* Remove redundant code
2020-02-18 16:40:44 -05:00
fba28950ec
Merge pull request #1693 from jamesagnew/im_20200131_remove_circular_dependency_forcedid
...
Changes to schema to loosen dependencies involving Forced ID table
2020-02-18 14:16:09 -05:00
64f07e4dc0
Includes performance enhancement ( #1702 )
...
* Includes performance enhancement
* Add changelog
* Test fix
* Fix typo
* A few coverage cleanups
* Test fix
* Fix changelog
2020-02-18 14:11:48 -05:00
f7db280099
Merge remote-tracking branch 'remotes/origin/master' into im_20200131_remove_circular_dependency_forcedid
...
# Conflicts:
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
2020-02-18 12:13:00 -05:00
60f16dd91d
Update to 4.3.x core JAR ( #1715 )
...
* Added optionality for adding resource fetcher
* Added coverage that proves invocations
* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences
* Added optionality for adding resource fetcher
* Added coverage that proves invocations
* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences
* Start working on converter
* Account for compile errors
* Test fix
* Work no validator
* Work on getting core working
* Add some test coverage
* Many test fixes
Co-authored-by: Jens Kristian Villadsen <46567685+jvitrifork@users.noreply.github.com>
2020-02-17 14:28:29 -05:00
ddc7b601ee
Version bump to 4.3.0-SNAPSHOT
2020-02-16 19:23:22 -05:00
4fd80cfca7
Bump to 4.2.0
2020-02-16 19:00:15 -05:00
da11d3d89e
remove distinct from search ( #1712 )
...
* it works now
* oops
* add successful migration message
* add successful migration message
* Add fix for #1300
* Remove FIXME
* Test fix
* Test fix
Co-authored-by: James Agnew <jamesagnew@gmail.com>
2020-02-15 12:45:59 -05:00
1d1aadb813
Work on multitenancy
2020-02-09 20:57:50 -05:00
ebf395bee9
Merge branch 'master' into ja_20200206_multitenancy
2020-02-09 08:40:29 -05:00
f7ec41ffc5
Work on multitenancy
2020-02-09 08:40:15 -05:00
c5c1e3196b
Resolve FIXMEs ( #1705 )
...
* Resolve FIXMEs
* Test fixes
* Test fixes
* Clean up unused code
* Add some test coverage
* Test fix
* Test fix
* Avoid intermittent
2020-02-09 08:39:46 -05:00
b2d2346228
Work on multitenancy
2020-02-07 15:18:06 -05:00
da54d3443e
fix noisy logs ( #1701 )
2020-02-04 11:29:09 -05:00
4229645602
Fix to code delta CSV encoding
2020-02-03 20:56:48 -05:00
5d4f34d67c
Intermittent test fix (yes again...)
2020-02-03 19:21:12 -05:00
26589e61c3
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2020-02-03 18:06:46 -05:00
b06105d970
Intermittent test fix
2020-02-03 18:06:29 -05:00
a31e90da2e
Merge pull request #1698 from jamesagnew/ks-20200203-remove-search-lastused
...
Remove searchLastReturned column
2020-02-03 16:53:27 -05:00
d7b45ff65c
Test fix
2020-02-03 16:48:27 -05:00
2e96d6bc2d
fix test
2020-02-03 15:49:37 -05:00
3c46595e81
Merge remote-tracking branch 'remotes/origin/master' into ks-20200203-remove-search-lastused
2020-02-03 11:33:15 -05:00
b4325199cf
review feedback
2020-02-03 11:20:18 -05:00
7faf8932cf
Merge pull request #1695 from jamesagnew/ks-20200131-near-search-http
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Ks 20200131 near search http
2020-02-03 10:38:29 -05:00
709aeb4ae8
Drop unnecessary index ( #1696 )
2020-02-03 10:29:39 -05:00
cda906d7b8
Column removed. Time to run tests.
2020-02-03 09:44:10 -05:00
38eb12234d
Merge branch 'master' into ks-20200131-near-search-http
2020-02-03 05:27:50 -05:00
218f344945
Test fix working
2020-02-03 05:24:02 -05:00
9d59de14a9
Unit test fix
2020-02-03 05:24:02 -05:00
63f2f38689
reinstate near param count validation
2020-02-02 21:21:37 -05:00
decb47dfc2
remove unused block
2020-02-02 16:56:25 -05:00
ffcf617659
pre-review cleanup
2020-02-01 20:27:21 -05:00
74948737a7
pre-review cleanup
2020-02-01 20:18:42 -05:00
c375c66f15
test passes
2020-02-01 20:15:58 -05:00
fb1eb7ca8f
parking wip
2020-02-01 13:58:27 -05:00
cd617389c6
create failing test
2020-01-31 18:07:17 -05:00
868ef9590d
started writing test
2020-01-31 17:14:37 -05:00
5d5b3d7639
Changes to schema to loosen dependencies between Forced ID table and the Resource and Resource History tables.
2020-01-31 11:16:01 -05:00
f38370fbf7
Drop half-written test
2020-01-31 05:50:30 -05:00
d4295124f1
Reduce verbosity of scheduler logging
2020-01-30 16:28:56 -05:00
6985f3e5f3
Rework how IDs are calculated for quartz jobs
2020-01-30 08:49:40 -05:00
e6d3897700
Add tests
2020-01-30 08:49:40 -05:00
578f2b7aef
License header updates
2020-01-30 05:26:10 -05:00
2545fc6e3d
Merge remote-tracking branch 'remotes/origin/master' into ks-20200120-near-search
...
# Conflicts:
# hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/4_2_0/changes.yaml
2020-01-29 17:06:02 -05:00
a6f3ee8319
Add a unit test
2020-01-29 09:35:22 -05:00
9548e74b17
Fix a test i missed
2020-01-28 15:46:46 -05:00
471073103f
Further reduce memory usage in the terminology delta operations
2020-01-28 14:36:15 -05:00
eff4b294df
Merge remote-tracking branch 'remotes/origin/master' into ks-20200120-near-search
...
# Conflicts:
# hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/4_2_0/changes.yaml
2020-01-25 18:40:55 -05:00
ba0048aade
Resolve memory leak ( #1685 )
...
* Work on memory leak
* Work on term delta uploading
* Resolve memoery leak in terminology service
* Fix cache key
2020-01-25 17:48:26 -05:00
78ab01f00b
Change log and check in-memory search for location
2020-01-24 21:56:14 -05:00
c87f8e0f4a
tested near anti-meridian
2020-01-24 18:55:32 -05:00
72ccd76ed0
prepping for antimeridian test
2020-01-24 14:37:28 -05:00
11dc087750
code review
2020-01-24 13:08:47 -05:00
672902486a
optimize imports
2020-01-24 13:07:19 -05:00
4ba91e0797
remove getDao() from Dao
2020-01-24 13:01:58 -05:00
9b0f850cf4
remove newSearchBuilder from dao
2020-01-24 13:01:35 -05:00
16cb9a74e4
Remove newSearchBuilder() from BaseHapiFhirDao
2020-01-24 12:19:08 -05:00
b465a7b781
final cleanup
2020-01-23 19:20:51 -05:00
James Agnew
ianmarshall
Tadgh
Andrew Fitzgerald
Maciej Kucharek
Ibrohim Kholilul Islam
Tadgh
Ken Stevens
Gary Graham
j-chan
IanMMarshall