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2823 Commits

Author SHA1 Message Date
ianmarshall 5fe46be41c Validate code changes and new tests. 2020-09-24 18:51:47 -04:00
ianmarshall e5daea17b7 Additional cleanup and migration tasks. 2020-09-23 17:17:07 -04:00
ianmarshall dffc02a126 Missing fixes for DSTU3 and R5. 2020-09-23 16:51:18 -04:00
ianmarshall 640ee94c5c Merge remote-tracking branch 'origin/master' into im_20200728_term_multi_version_support 2020-09-23 16:43:22 -04:00
ianmarshall ceb5ec6384 Use canonical identifiers for code systems rather than specifying version separately. 2020-09-23 16:42:29 -04:00
ianmarshall b32c4f01a8 Fixed lookupCode implementation in InMemoryTerminologyServerValidationSupport. 2020-09-22 18:46:16 -04:00
ianmarshall 4216cee8c6 Added and enhanced tests plus fixes arising from tests. 2020-09-22 14:44:32 -04:00
James Agnew ef4f3df945
Don't install draft package contents (#2099) 
* Don't install draft package contents

* Add changelog

* Add changelog
 2020-09-22 09:44:36 -04:00
James Agnew 072e63be5a
Avoid a crash on double date chains (#2097) 
* Avoid a crash on double date chains

* Add changelog

* Address coverage warning
 2020-09-21 15:43:07 -04:00
ianmarshall f9f8bf6515 Merge remote-tracking branch 'origin/master' into im_20200728_term_multi_version_support 2020-09-20 22:02:08 -04:00
ianmarshall 302bbca8fd Changes to support multi-versioning in ValueSet $expand operation. 2020-09-20 22:01:21 -04:00
Ken Stevens 3189819dd5
limit transaction size config (#2087) 2020-09-16 14:13:03 -04:00
jamesagnew b64e982ec3 Credit for #2083 2020-09-16 09:07:33 -04:00
Tue Toft Nørgård c884f29112
SearchCoordinatorSvcImpl gets ExecutorService from injected ThreadPoolTaskExecutor (#2083) 
* Get ExecutorService from injected ThreadPoolTaskExecutor which enables support of TaskDecorators (e.g. to add/clear ThreadLocal logging context (MDC) variables)

* Properly initialize ThreadPoolTaskExecutor
 2020-09-16 09:05:28 -04:00
ianmarshall b2b63cbb02 Fixed JUnit tests. 2020-09-15 22:05:46 -04:00
ianmarshall ca0bdc8e4c Merge remote-tracking branch 'remotes/origin/master' into im_20200728_term_multi_version_support 2020-09-15 16:49:06 -04:00
ianmarshall b4cd09a5b6 Further cleanup 2020-09-15 12:30:26 -04:00
ianmarshall fe684ee4c0 Further cleanup 2020-09-15 12:26:17 -04:00
ianmarshall cd104ad635 Revised approach for versioning of ValueSet. 2020-09-15 10:21:42 -04:00
James Agnew 9711b5ed18
Update resources on package reinstall (#2078) 
* Start testing

* Update resources on package install

* Add changelog
 2020-09-15 08:46:43 -04:00
ianmarshall 5b707f97a9 Missing commits 2020-09-04 09:25:35 -04:00
ianmarshall 019d08a064 Merge remote-tracking branch 'remotes/origin/master' into im_20200728_term_multi_version_support 2020-09-03 22:37:39 -04:00
ianmarshall 5f005120c9 Initial changes to support multi-version ValueSets 2020-09-03 22:36:15 -04:00
jamesagnew 5b7e6b593b Avoid startup retry loop 2020-09-02 19:56:57 -04:00
James Agnew d8542899e5
Don't lazy load DAOs (#2061) 
* Don't lazy load DAOs

* More tweaks
 2020-09-01 09:54:50 -04:00
James Agnew c6777578a8
Avoid DB binary storage deadlock (#2062) 
* Avoid DB binary storage deadlock

* Add changelog

* Rework
 2020-09-01 09:52:38 -04:00
ianmarshall 94440c849f Ensure that LOINC loader assigns a distinct ID for each version. 2020-08-30 21:53:38 -04:00
ianmarshall 1c55d87b10 Problem found in LOINC loader. 2020-08-30 17:11:48 -04:00
ianmarshall 3fef8f7bef Back out changes relating to validate operations. Cleanup of code 2020-08-30 15:29:57 -04:00
ianmarshall 92313cd770 Tests and fixes to support versioned CodeSystem lookup and subsume operations 2020-08-26 16:23:17 -04:00
ianmarshall 5a0bce9155 Changes to enable request delete of specific Code System version. 2020-08-25 12:45:53 -04:00
ianmarshall 796d2923e0 Merge remote-tracking branch 'remotes/origin/master' into im_20200728_term_multi_version_support 2020-08-25 12:07:13 -04:00
ianmarshall 749c2bc4be Changes to enable request delete of specific Code System version. 2020-08-25 12:06:07 -04:00
James Agnew 437e81fc65
Support multiple updates of one resource in a transaction (#2050) 
* Support multiple updates of one resource in a transaction

* Test update

* Add changelog

* Test fix
 2020-08-25 05:55:54 -04:00
vedion 31d736915f
- Adding missing null guard (#2049) 
* - Adding missing null guard. Guard needed when reference can't be resolved.

* Adding test for INCLUDE_ALL null guard fix

Co-authored-by: ahn <anders.havn@systematic.com>
 2020-08-22 16:59:36 -04:00
ianmarshall dc786eaff9 Refine model for storing multiple code versions. 2020-08-21 10:16:10 -04:00
ianmarshall 2126c5c556 Merge remote-tracking branch 'remotes/origin/master' into im_20200728_term_multi_version_support 2020-08-18 11:15:09 -04:00
jamesagnew 30ac44974d Add JPA Starter to componentscan exclusions 2020-08-18 08:06:21 -04:00
ianmarshall c1dcf0442c Fix broken tests. 2020-08-17 21:52:16 -04:00
ianmarshall 4db00fa604 Fix broken test and cleanup. 2020-08-17 18:14:37 -04:00
James Agnew 1fadaeeff5
Reject nvalid SearchParameter wiith no path expression (#2043) 
* Fix some changelog typos

* Reject SearchParameter with invalid path

* Add changelog

* Test fix

* Test fixes

* Test fixes

* Test fix

* One more test fix
 2020-08-17 11:21:55 -04:00
ianmarshall bd94ff96cc Merge remote-tracking branch 'remotes/origin/master' into im_20200728_term_multi_version_support 2020-08-16 21:38:41 -04:00
Ken Stevens 7dd7f2b923
resource pid userdata fix (#2044) 
* fixed resource UserData RESOURCE_PID for expunge hook (was incorrectly pointing to ResourceHistoryTable pid instead of ResourceTable pid.

* fix merge
 2020-08-16 20:48:39 -04:00
jamesagnew 92718c7ef2 Version bump to 5.2.0-SNAPSHOT 2020-08-12 10:23:46 -04:00
jamesagnew 5fb7bd5156 Version bump to 5.1.0 2020-08-11 17:43:24 -04:00
jamesagnew 90ebaf8549 Add one more test for #2023 2020-08-11 08:54:03 -04:00
jamesagnew f3fbad63e7 Avoid a LOB error when expanding a valueset on Postgres 2020-08-11 08:30:48 -04:00
jamesagnew f0ed640e24 Upgrade core library dependency version 2020-08-10 09:05:04 -04:00
James Agnew e61b39fc30
Force a flush of the SearchParameter cache sooner when SPs change (#2030) 
* Force a flush of the SearchParameter cache sooner when SPs change

* Add changelog

* Test fixes
 2020-08-09 19:30:59 -04:00
jamesagnew 096f310cae Increase visibility 2020-08-09 14:23:06 -04:00