1fd99dac63
Enable optional cascading deletes on JPA server ( #1363 )
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* Start working on cascading deleets
* WOrk on cascading deletes
* Work on cascading deletes
* Enable cascading deletes
* Cascade deletes almost working
* FIx test
* Test fix
2019-06-28 17:32:39 -04:00
53b47ed580
Ensure that parsed reesource is available to interceptors
2019-06-27 18:23:10 -04:00
10d969c514
Add Consent Service ( #1359 )
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* Initial consent svc
* Ongoing consent svc work
* Add docs
* Ongoing consent service work
* Work on consent service
* More work on consent svc
* License header updates
* Ongoing consent svc work
* Some test fixes
* Some test fixes
* More work on consent svc
* Tests working
* Test fix
* Propagate RequestDetails to everything in JPA server
* More interceptor tweaks
* Fix compile error
* One more tweak to captured SQL
* Ongoing interceptor tweaks
* Ongoing interceptor tweaks
* More interceptor tweaks
* Interceptor tweaks
* Tweaks to tests
* Fix tests
* Test fix
* Raise warnings when encoding extensions with missing values
* Consent service work
* More interceptor tweaks
* Consent interceptor tweaks
* Add logging to test
2019-06-27 16:35:29 -04:00
8bb010bb18
Test fixes
2019-06-22 17:42:02 -04:00
0fbde2a4e5
Fix #1352 - Don't fail to create observation with a value type of
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SampledData
2019-06-22 16:43:25 -04:00
3274693576
FIx a test
2019-06-22 16:31:55 -04:00
95876ec3cb
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-06-22 16:24:07 -04:00
638cb976fd
Fix #1250 - Don't include Bundle.entry.response on search results
2019-06-22 16:23:32 -04:00
4ad1808da3
Propagate RequestDetails to everything in JPA server ( #1358 )
2019-06-22 15:18:06 -05:00
c7798fee48
Test fix
2019-06-18 05:40:00 -04:00
b2e99cf035
Add support for conditional patch ( #1348 )
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* Add support for conditional patch
* Add changelog
* Test fix
2019-06-17 16:12:05 -04:00
b56f59542a
Move JettyUtil to new module
2019-06-14 18:34:45 -04:00
aab7bb6b64
Issue-1325: Let OS assign random ports to servers during testing, and let tests get the port of the running server once the OS has assigned a port. Delete PortUtil and similar utilities.
2019-06-14 18:34:45 -04:00
3bb3c3a383
Preserve contained resource meta when encoding to dao ( #1311 )
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* Preserve contained resource meta when encoding with: parser.setDontEncodeElements(ResourceMetaParams.EXCLUDE_ELEMENTS_IN_ENCODED)
* - Correct so security, lastUpdated and versionId is not encoded
- Added test
2019-05-22 17:11:03 -04:00
d4d3178621
A couple of test fixes
2019-05-11 15:04:44 -04:00
738c2c1797
Interceptor framework refactoring ( #1287 )
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Interceptor framework overhaul
2019-04-24 14:32:30 -04:00
311246e5f0
Merge pull request #1255 from jamesagnew/addFetchValueSet
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added fetchValueSet to IValidationSupport and made it public
2019-04-15 17:03:56 -04:00
c8f2e4bbc9
Return HTTP 400 for missing body on POST and PUT
2019-04-14 12:32:09 -04:00
15fda25771
added fetchValueSet to IValidationSupport and made it public to enable overwriting it in subclasses
2019-03-27 17:35:01 +01:00
e85bec2858
Ja inline references ( #1252 )
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* Use a single IN clause for OR reference searches
* Add changelog
* One more attempt at getting the free port util to actually work... sigh
* One more tweak to free ports
* Bundle fix
2019-03-26 10:42:42 +01:00
e3ecf21fa9
One more test fix
2019-03-12 13:24:18 -04:00
00a8f8c759
Fix broken build
2019-03-12 13:13:13 -04:00
3433ecfd14
Test fixes
2019-03-11 16:14:34 -04:00
71a07c0239
Refactor the way that contexts are used in narrative generator
2019-03-11 16:05:25 -04:00
dcfacfea49
Has param no in ( #1232 )
2019-03-10 20:50:24 -04:00
f8b8f2d1b0
Move process-message to the correct level
2019-03-06 16:12:43 -05:00
48c10bddc5
Narrative Generator refactoring ( #1219 )
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* Starting work on this
* Working on narrative templates
* Work on new narrative system
* Account for some failing tests due to refactoring of narrative mode
* Another test fix
* More test fixes
* One more test fix
* Work on searches
* Address review comments
2019-02-27 14:59:57 -05:00
e401ec86e4
Enhanced elements ( #1192 )
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Squashed merge: Add elements exclude mode
* Start working on elements enhancement
* Work on elements projection
* Work on elements filter
* Feature is now working
* Just some cleanup
* Address compile issues
2019-02-03 16:41:33 -05:00
737ee9e97c
add JSON-like tests for DSTU3 and R4
2019-01-30 17:32:06 -08:00
68fae08f20
Fix casing in base64Binary type
2019-01-23 08:34:09 -05:00
b8755615b2
Allow AuthorizationInterceptor to read patients if the user has read
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access to the individual instance
2019-01-14 13:53:08 -06:00
93bf2788ec
Add subscription narrowing interceptor and refactor RuleBuilder to be a
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bit cleaner
2019-01-12 14:23:26 -06:00
3c260e5ef2
Ignore unfinished test
2019-01-10 07:36:37 -07:00
b8f200f897
Correctly expose chains in DSTU2 server conformance statmeent
2019-01-10 06:15:31 -07:00
f8b232bb67
Issue 430: Generate OperationDefinitions for named queries, fix minor errors in generation of OperationDefinition for operations. Closes #430 .
2019-01-09 05:41:08 -05:00
62ae71c1c6
Allow authorizing delete operations via a transaction in
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AuthorizationInterceptor
2019-01-07 15:43:36 -05:00
a8a97ae6b2
Two test fixes
2019-01-07 09:18:11 -05:00
bb6e392e2d
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-01-07 09:17:37 -05:00
c104923855
Add an additional test for transaction processing
2019-01-07 09:17:19 -05:00
3d94761bcb
Improve response for transactions
2019-01-06 18:08:32 -05:00
b2c7a2003e
Prevent a nullpointerexception in AuthorizationInterceptor
2019-01-06 16:42:29 -05:00
14a132a937
Squashed commit of the following:
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commit 965965583070da25b76f
2018-12-27 17:58:47 -05:00
d46878be86
unit tests for head operation
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-reverting the removal of the unit test but with the correct status code
-added unit test for a valid patient
2018-12-21 05:40:35 -05:00
65a54bfe29
the test for head operation is not needed anymore in the
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unsupportedhttpmethods
2018-12-21 05:40:35 -05:00
b442982310
Add media interceptor
2018-12-08 18:49:58 -05:00
b41c222880
Require explicit declaration of authorizationinterceptor operation rules
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on whether the response is authorized or not
2018-11-23 14:25:46 -05:00
58388bb614
Allow client to return methodoutcome instead of resdource for operation
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call
2018-11-19 11:11:49 +01:00
e4f6b3e9a2
Add a warning if an invalid class is scanned
2018-11-16 10:42:21 +01:00
4b099cf057
Fix #944 - NPE when using a custom resource class that has a @Block
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child
2018-11-15 16:11:55 +01:00
80b0f14c4b
Merge pull request #1103 from RuthAlk/own_message_resolver_3.6.6
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Allow slotting in own IMessageResolver
2018-11-08 13:22:48 -05:00
76cd3f6b47
Allow client assigned IDs to be purely numeric in JPA server if
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configured to do so
2018-11-07 18:25:50 -05:00
2656d008d6
FIx broken test
2018-11-07 11:26:23 +01:00
4b790eddb6
Add additional authorization test
2018-11-07 11:01:29 +01:00
4315900ac0
Merge branch 'philips-3.6.0'
2018-11-01 09:15:27 -04:00
3bfdc61866
Fix a couple of test failures
2018-11-01 09:15:03 -04:00
729bbe04d0
Allow slotting in own IMessageResolver
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This is useful in case we want to define our own way of translating
the codes in the thymeleaf templates.
2018-10-26 12:13:58 +02:00
21a0390e6e
Even more additional work on FhirTerser.getValues(...) enhancements. Almost ready for review.
2018-10-24 11:43:19 -04:00
4e414a16fb
More additional work on FhirTerser.getValues(...) enhancements. Ready for review.
2018-10-22 18:37:34 -04:00
688e159493
Additional work on FhirTerser.getValues(...) enhancements.
2018-10-22 18:22:03 -04:00
225007d681
Completed work on FhirTerser.getValues(...) enhancements.
2018-10-19 18:24:26 -04:00
cd6d4302c3
Incremental work on FhirTerser.getValues(...) enhancements.
2018-10-19 15:13:51 -04:00
4e252063b8
Allow transactions and batches with transaction permission in
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AuthorizationInterceptor
2018-10-16 19:54:55 -04:00
90a3ead24f
Merge pull request #1089 from srdo/issue-545
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Issue-545: Base resource profile links should point to http://hl7.org …
2018-10-09 12:05:47 +02:00
c64567be68
More redundant test cleanup
2018-10-04 09:15:12 -04:00
597c8dbafe
Remove redundant tests
2018-10-04 08:57:37 -04:00
b265c0281b
Expand search range when searching by date
2018-10-03 21:31:01 -04:00
2050355e1e
Issue-545: Base resource profile links should point to http://hl7.org/fhir/StructureDefinition (invariant sdf-7 in spec)
2018-10-03 13:36:34 +02:00
3e445faf47
Squashed commit of the following:
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commit df641506885e09e63f80efc6c658d01a1a3a8142
Author: James Agnew <jamesagnew@gmail.com>
Date: Sat Sep 29 13:47:22 2018 -0400
Shrink validation resources
commit 4c1550eafa26f4235b4b8804741aecc03276b5c6
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 22:45:28 2018 -0400
Updates to get R4 working
commit 8332f15291006691ed9b07ead3e3524b0fc85510
Author: jamesagnew <jamesagnew@gmail.com>
Date: Fri Sep 28 09:02:13 2018 -0400
Ongoing work on gettign R4 working
commit f7146cab7aed937bb625a8aec95744d76db00041
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 05:21:01 2018 -0400
More work on sync
commit f48de4a10b1bab2584fee813017d9b27b237bfa9
Merge: 9e4f3cc722 aacb78b779
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:29 2018 -0400
Merge branch 'sync_r4' of github.com:jamesagnew/hapi-fhir into sync_r4
commit 9e4f3cc722668aae31a77b19bf9b032af3ae01b0
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:19 2018 -0400
Fix compile error
commit 7ec29e0ceda8f9013cbabb95767cbe15b4b81303
Merge: 23f7517325 002c4b3ff7dfb4de86f1
2018-09-29 13:48:35 -04:00
f4a21eadda
Fix this issue
2018-09-01 14:38:52 +08:00
fee0166800
Work on removing validstion cache
2018-08-28 05:26:06 -04:00
54c07263b6
Increase code lengths
2018-08-26 12:32:35 -04:00
df651c830e
Remove dynamic mode
2018-08-19 17:35:08 -04:00
76c981664a
Test fix
2018-08-12 19:03:24 -04:00
ea1f17762e
Don't apply last updated to includes
2018-08-11 12:20:07 -04:00
3a5556006b
Merge branch 'master' into master
2018-07-27 16:59:52 +03:00
9c39733aff
Fixed issues
2018-07-27 16:48:44 +03:00
e5cb609f4d
Performance improvements
2018-06-24 20:02:27 -04:00
e9fffd3cdc
Allow indexing in custom search params to descend into contained
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resources
2018-06-22 11:22:07 -04:00
ed0b5f54a5
More authorizationinterceptor tweaks for better security
2018-06-12 21:52:01 +08:00
e7804b881c
Fix CI issue
2018-06-06 11:39:06 -04:00
3583dfd503
Correctly include project description in capabilitystatement
2018-06-03 16:19:33 -04:00
987679483a
Version bumps
2018-06-03 15:29:10 -04:00
9db3be8536
Include implementation URL in generated capabilitystatement
2018-06-03 14:22:15 -04:00
35d5d3adb5
Disable useless test
2018-05-31 11:30:27 -04:00
be1e0df9e2
Fix test flagged by errorprone
2018-05-30 10:48:53 -04:00
d819d685ee
Test fix
2018-05-30 09:57:41 -04:00
a52805e504
Work on JDK9 support
2018-05-30 05:45:08 -04:00
67f21426cb
Disable content header on response for non-create operations
2018-05-25 07:28:01 -04:00
98d997c620
Add changelog and credit for #867
2018-05-23 06:21:00 -04:00
6da4ec1156
Merge pull request #867 from jasonaowen/master
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Fix methods that check for names in lists
2018-05-23 06:08:55 -04:00
4d62120a18
Fix issues reported by errorprone
2018-05-15 08:44:15 -04:00
a3ff08d9ec
Replace phloc with ph for #775 ( #930 )
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* Replace phloc with ph
* Enable schematron tests
* Make HAPI-FHIR ph-schematron on OSGI
* Work on getting tests passing
* Another test fix
* Fix up transaction handling for DSTU2
* Add changelog
* Avoid double transaction
* Dont use readonly
* One more test fix
* Update to snapshow build
* Resolve a circular dependency
* Try to fix tests
* Solve recurring NPE in DSTU2 tests
* Fix one more test
* Test fix
* More test threading fixes
* One more attempt to get tests passing
* Refactoring for tests
* Refactoring for tests
2018-05-14 17:38:40 -04:00
3d762b984b
Sync to R4 definitions
2018-05-12 19:35:42 -04:00
593a705365
Performance enhancements on the CapabilityStatement generator for JPA
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server
2018-04-28 11:06:42 -04:00
07e7af746f
Work on expunge operation
2018-04-22 22:03:23 -04:00
53c2d8a38d
Merge branch 'master' into loinc_loader_update
2018-03-29 06:21:55 -04:00
29c09e40f0
Merge pull request #858 from patrick-werner/master
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added Test for #11 to Dstu3 and R4, fixed #853
2018-03-24 06:31:24 -04:00
308ac63a77
Merge branch 'master' into loinc_loader_update
2018-03-20 07:53:41 -04:00
6359f7f8a1
More work on loinc
2018-03-19 08:51:02 -04:00
dd7deae1c1
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-03-12 06:43:42 -04:00
49192e5e48
Credit for #776
2018-03-12 06:42:22 -04:00
60354a4cc8
Merge branch 'master' into master
2018-03-12 07:41:22 -03:00
cb2f5a0bba
Merge pull request #786 from CarthageKing/bugfix-chaining-urlvalue
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ensure to use resourceType properly when it is explicitly provided in a chained reference param
2018-03-12 07:32:27 -03:00
0cee57392a
Merge remote-tracking branch 'upstream/master'
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# Conflicts:
# hapi-fhir-validation/src/test/java/org/hl7/fhir/r4/validation/FhirInstanceValidatorR4Test.java
2018-03-07 11:45:31 -03:00
8bdca012d6
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-03-04 11:04:07 -05:00
07290ae8a0
Sync to latest R4 code
2018-03-04 11:02:47 -05:00
b2ceb87a70
Work on #873
2018-03-03 17:50:29 -05:00
3009ec7f74
- added guava-testlib as test dependency to modules hapi-fhir-structures-dstu2 and hapi-fhir-structures-dstu3
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- added DateRangeParam.equals(Object) and DateRangeParam.hashCode()
- fixed broken DateParamTest
2018-03-02 13:03:30 +01:00
2f139640e5
Add unit tests for HumanName has(String) methods
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Prefixes, given names, and suffixes can all have multiple entries, and
so are kept in a list. The `hasPrefix(String)` and its sibling methods
are conveniences for checking that these lists contain the given
element. Add tests around those three methods to ensure that the list
checking code is correct.
Issue #865 HumanName#hasGiven(String) can never return true
2018-02-26 18:22:38 -05:00
a8f3c2efb6
added Test for #11 to Dstu3 and R4
2018-02-21 16:03:31 +01:00
0e2d55081f
Fix a crash when no count parameter supplied
2018-02-02 12:31:59 -05:00
b61887e841
Improve performance of base64 validation
2018-01-30 17:37:12 -06:00
8d468de551
Use R4 validator for DSTU3 validation
2018-01-30 11:16:04 -06:00
f976b7bf7e
Add new interceptor method which enabled interceptors to modify response
2018-01-28 14:01:20 -06:00
97a1ccac3d
Merge remote-tracking branch 'upstream/master'
2018-01-28 16:43:32 +01:00
01186ec8cb
Squashed commit of the following:
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commit ab876ef864005b6758d3e00a1bb1ef2dad5d2161
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Jan 12 18:59:15 2018 -0500
Tests all passing
commit 4f8a5d98307da1bb5ca7602e34b1d3b791f73d25
Author: jamesagnew <jamesagnew@gmail.com>
Date: Fri Jan 12 08:21:58 2018 -0500
Almost compiling
2018-01-12 18:59:43 -05:00
4e2db2b58b
More work on multitenancy
2018-01-11 11:23:14 -05:00
377bae8c16
Allow interceptors to modify request contents
2018-01-06 14:27:32 -05:00
a8e5413d1f
Fix two issues found by ErrorProne
2017-12-22 13:47:40 -05:00
8c10d96416
Add tests
2017-12-22 13:33:35 -05:00
19863de012
Update javadocs on IdType
2017-12-19 15:57:22 -05:00
6c85cd1375
Improve documentation and mark redundant methods as deprecated in
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IServerInterceptor
2017-12-12 21:45:54 -05:00
d00c7dbea8
Giant breakthrough in fixing sporadic test failures!
2017-12-05 12:08:56 -05:00
8427fc4547
Merge remote-tracking branch 'upstream/master'
2017-11-26 14:23:33 +01:00
6afe6804db
Fix #796 - Correctly escape spaces in generated URLs
2017-11-25 17:52:12 -05:00
46fcceb9c6
[(master)] Merge remote-tracking branch 'upstream/master'
2017-11-21 11:15:50 +01:00
60b6c3745b
Add test for #794
2017-11-20 12:03:45 -05:00
874390df61
treat reference param values as opaque and not an url when the param is
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chained
2017-11-15 15:03:53 -06:00
b277693106
ensure to use resourceType properly when it is explicitly provided in a
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chained reference parameter
2017-11-14 19:00:28 -06:00
59f4177a59
Fix #750 - Elements are not preserved in page requests
2017-11-06 19:49:50 -05:00
78744ac9e4
[(master)] Merge remote-tracking branch 'origin/master'
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# Conflicts:
# hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/model/codesystems/DeviceStatusEnumFactory.java
2017-11-06 12:59:44 +01:00
edb1479af9
[(master)] Renamed files in wrong casing.
2017-11-06 12:57:25 +01:00
6040eef7ee
[(master)] Renamed files in wrong casing.
2017-11-06 11:55:49 +01:00
09a419e354
[(master)] Renamed files in wrong casing.
2017-11-06 11:55:08 +01:00
5e9f88df2d
[(master)] Renamed files in wrong casing.
2017-11-06 11:54:14 +01:00
2b4a492870
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-11-05 19:22:13 -05:00
932bb2ed8e
Fix test
2017-11-05 19:21:23 -05:00
bde05c8b4d
Fix broken DeviceStatus enums
2017-11-05 19:20:49 -05:00
37c8e6c645
Add test for #751
2017-11-05 18:52:28 -05:00
75bfb6af1b
Add support for Binary X-Security-Context header in server
2017-11-02 11:38:43 -04:00
256d541dda
Merge pull request #736 from malcolmm83/master
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Fix for Binary.securityContext is not being encoded #734
2017-11-01 15:37:43 -04:00
11dc917540
[(master)] Reverted unintentional changes
2017-11-01 12:52:17 +01:00
53674db357
[(master)] Added support for extensions in Meta resource
2017-11-01 11:37:51 +01:00
c5b7fea01d
Merge pull request #725 from InfiniteLoop90/issue-724-copy-domain-resource-id
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Fixes #724 - Resource IDs are now copied when copying instances of subclasses of DomainResource for DSTU2 and DSTU2.1.
2017-10-31 17:41:33 -04:00
0fec0485e8
Merge pull request #717 from aehrc/feature/ifModifiedSince_bugfix_master
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fix bugs with inverted test for If-Modified-Since (impl and tests)
2017-10-26 18:31:19 -04:00
0875318842
Merge pull request #711 from InfiniteLoop90/master
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Added R4 to the client's server version check. Also tweaked the ClientServerValidation* tests to be a little more predictable
2017-10-26 17:56:48 -04:00
16e19a9fed
Fix #720 - Failure to parse custom type
2017-10-21 13:47:03 -04:00
73382d85ca
Fix #761 - Restore codesystem package from DSTU3 and add unit tests to
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verify existence
2017-10-17 15:18:36 -04:00
a782bd7630
Fix a number of problems reported by ErrorProne
2017-10-16 10:00:27 -04:00
31fb1236a1
Reuse bundle ID when returning query cache results
2017-10-11 06:05:14 -04:00
James Agnew
Stig Rohde Døssing
basecade
patrick-werner
Ken Stevens
bdenton
Stig Rohde Døssing
Corina Dalaban
Ruth Alkema
Diederik Muylwyk
anamariaradu10
Ana Maria Radu
Gaetano Gallo
Jason Owen
Simon Janic
Simon Marco Janic
michael.i.calderero