- use a separate enum for the states - chunks have different transitions than instances.
- use transactional update events for work-chunk state transitions
- introduce spec-test to define behaviour of batch2 storage
- replace synchronized facade with simpler ProxyUtil handler.
- change job cancellation to db update query
Add optimistic write lock to $reindex operation to prevent indexing stale data.
Introduce Lockstep Phaser to make testing easier
Add 1 query to every resource reindex :-(
* First commit: Add userSelected and version to ResourceTag and ResourceHistoryTag. Add migration step to migration tasks. For some reason SchemaMigrationTest is failing.
* Fix nullability, update constructors, truncate versions over 30 chars.
* yay we're done just cleanup
* Checkpoint for recent changes.
* Last commit before pausing work.
* Fix bad code to find the version, tweak unit test pid ID to versionless and add TODO about why is update part of the test not passing?
* Fix bad code in extractTagsRi(): Make it leverage the IBaseCoding variable already in the for loop. Fix bad code in populateResourceMetadataRi(). Leverage the existing BaseTag and use it to populate the IBaseCoding tag instance instead. Add more and better assertions in the unit test.
* Merge rel_6_4 in
* Current state for pairing
* Fix CodingDt.getUserSelected method return code in tinder
* Complete migration task and cleanup
* Remove missed fixme
* Bump version temporarily to use it for building core lib
* Use primitive for compatibility with tinder generated CodingDt
* Copyright updates
* Hack to bypass NPE generated by bogus tinder-generated code
* Simplify by removing temporary deprecations as version bump is needed anyway because of TagDefinition entity changes
* Adjust tests
* Fix migration task
* Add test to show problem with tinder generated BooleanDt
* More test adjustments
* Improve BooleanDt NPE avoidance
* Update core dep
* Reverse Juan CVE VersionEnumTest changes.
* Fix unit test.
---------
Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
* Improve performance on bulk export
* Add changelog
* Start working on cleaned up reducer
* Clean up batch calls
* Work on issues
* Build fixes
* Test fixing
* Test fixes
* Work on progress
* Add changelog
* Build tweak
* Fixes
* Fixes
* Fix compile
* Test fixes
* Bump to 6.4.2-SNAPSHOT
* Fix compile
---------
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
* First commit: Create new branch from the release branch with changes from James' branch. This probably won't compile as the work is incomplete.
* Second round of changes from integrating James' branch.
* Mark most test failures with TODOs.
* Add whitespace
* Add changes to FhirPathR4 to set FHIRPathEngine to non-strict FP evaluation.
* Fix CreatePackageCommandTest to assert null instead of empty string. Comments on tests that fail due to the double-quote encoding problem.
* Downgrade to core 5.6.97.
* Fix another test and remove TODOs.
* Fix changelog.
* Clean up some erroneous changes and TODOs.
---------
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
* failing test
* fix + changelog
* tweak
* add method to IJobPersistence to use a Stream
* tweak
* tweak
* decrease test time
* clean up
* code review comments
* version bump
* Increase timeout limit to match BulkExportUseCaseTest
* shorten test
* maintenance pass
* add logging
* Revert "add logging"
This reverts commit b0453fd9538d6858e6bd212f402d4b04c6306136.
* Revert "maintenance pass"
This reverts commit bbc7418d519260c4b9827546a0bf822db1c78b1b.
* test
* trying to fix BulkDataExportTest testGroupBulkExportNotInGroup_DoesNotShowUp
* shorten tests
* logging
* move test location
* fixes a regression caused my change in hapi-fhir
* timeout
* Revert "fixes a regression caused my change in hapi-fhir"
This reverts commit 4b58013149836eededc568d295c5baf8fb3df989.
* testing
* Revert "testing"
This reverts commit aafc95c2f36bf89ae935c6c342017ec300fe4289.
---------
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-mbp.home>
* adding a test
* fail in the case of ref enforce on type and on write and autocreate are all true
* update to code
* removing a line
* cleanup
* removing check on urn
* changing just to trigger a build
* adding a comment to the pom
* updating test for better information
---------
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-mbp.home>
* First commit: Scheduled batch 2 bulk export job delete and binary, incomplete mock-based unit test, and a mess of TODOs and code that needs to be deleted.
* Refine solution and add a concrete unit test but still work to do.
* Comment out code in cancelAndPurgeAllJobs() and see if it breaks the pipeline.
* Unit tests complete. New Msg code for new IJobPersistence.fetchInstances() method. Cleanup TODOs and add others.
* Finish final touches on implementation.
* Add changelog.
* Various cleanup.
* Code review feedback.
* Small tweak to changelog.
* Last code review tweak.
* Address more code review comments.
* Reverse changes to consider work chunks. Add a constant for write-to-binary.
* cleaning up checkstyle files
* One more fix for #4467 (#4469)
* added exlusions for files at base project level so checkstyle doesn't error out
* duplicate error code from merge
* changing lifecycle goal for all module checkstyle check
* moving checkstyle to base pom file, changing exectution phase on base check, cleaning dependency, resolving duplicate error code
* wip
* trying to figure out why pipeline cannot copy files
* removing modules that don't actually need to be built.
* I messed up the version
---------
Co-authored-by: James Agnew <jamesagnew@gmail.com>
