da30772a01
Remove dead methods, constants, and add a javadoc
2020-08-01 13:19:52 -07:00
e67ee36492
Renamed and modified reset constant for better naming
2020-08-01 11:36:14 -07:00
90e96c1fb4
Fix bug caused by Persons with >1 historical version
2020-07-23 14:35:28 -07:00
9491a3e499
Add DSTU3 clear operation
2020-07-23 09:37:11 -07:00
de9621602b
Update provider and create test skeletons for empi batch run
2020-07-18 18:18:21 -07:00
62b5221c3f
Move Empi Batch work to the BaseHapiResourceProvider, allowing manual EMPI runs on a server/type/ID basis.
2020-07-18 13:36:14 -07:00
6bb92717f5
Merge branch 'master' into batch-empi-job
2020-07-16 11:00:32 -07:00
31e9f140ad
Fix operation name. Remove unnecessary beans
2020-07-16 09:48:58 -07:00
5a79304893
Implement GraphQLQueryBodyParameter and GraphQLQueryBody annotation ( #1896 )
...
* implement GraphQLQueryBodyParameter and GraphQLQueryBody annotation
* GraphQLQueryBodyParameter to recognize application/graphql
* fix 500 error on method without @GraphQLQueryBody
* refactor to processGraphQlGetRequest and processGraphQlPostRequest
* add testGraphPostContentTypeJson and testGraphPostContentTypeGraphql to GraphQLR4RawTest
* fix imports
2020-07-16 09:25:26 -04:00
c3b89b4ad5
Get basic tests running
2020-07-09 15:56:41 -07:00
f82a53e6f9
Merge branch 'master' into batch-empi-job
2020-07-06 13:12:20 -07:00
f356c7c385
Migrate to JUnit5 ( #1952 )
...
* Work on junit
* Work on junit 5
* Work on junit 5
* Bump errorprone vcersion
* Work on tests
* Junit 5 tweaks
* Fixes
* Work on tests
* Work on junit5
* Work on tests
* Test fixes
* Work on junit5
* Test work
* Get junit5 working
* Test fix
* Work on tests
* WOrk on tests
* Work on tests
* fixes
* Compile fix
* One more tweak
* Compile fix
* Add changelog
* Fix compile error
* Compile fix
2020-07-04 18:28:16 -04:00
25d8668f55
Add Basic provider method, skeleton of tests
2020-07-03 15:21:32 -07:00
fa4bbe3685
Allow search criteria as subscription delivery mechanism ( #1951 )
...
* Terser should create correct Enumeration on create
* Start work
* Work on subscriptions
* Work on seed bundles
* Bundle transmission
* Add changelog
* Test fix
* Fix LGTM warning
2020-06-30 14:29:09 -04:00
34c68e15af
Add license headers
2020-06-14 19:10:36 -04:00
d164e2d450
Empi 28 matchers ( #1918 )
...
* adding matchers
* reorganize resource matching api
* added precision sensitive date matcher
* stricter rules validation
* validate thresholds
* validate paths. with FIXMES
* validate searchparams
* fix merge compile error
* add soundex, validate no duplicate names
* add normalize substring
* add exact field to matcher
* EXACT -> STRING, exact=true
* cleanup test method
* match test passes with fixmes
* fixed vector matching
* fixed vector matching
* updating documentation and fixing tests
* updated rules documentation with latest matchers
* updated rules documentation with latest matchers
* created eid page
* eid documentation
* pre-review cleanup
* clean up beans
* disentangling beans
* checkstyle
* noop to trigger CI
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_details.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_details.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_details.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_details.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_rules.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* review feedback
* review feedback
* review feedback
* review feedback
* review feedback
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2020-06-14 17:15:56 -04:00
b8da4f0140
Add package support ( #1911 )
...
* Begin rework of package management
* Work on NPM
* Work on package management
* Work on NPM
* NPM rework
* Work on NPM
* NPM package rework
* Updates
* Updates
* Add license
* Work on package server
* Work on package importing
* Work on package management
* Package rework
* Work on packages
* Work on package manager
* Work on pkgs
* NPM work
* NPM rework
* Work on package cache
* Work on NPM
* Work on NPM
* Package fixes
* Add tests
* Tweaks
* Test fixes
* Add changelog
* Avoid snapshot dep
2020-06-10 05:30:20 -04:00
558f419955
Empi 54 not duplicate ( #1900 )
...
add operation to unduplicate persons
2020-06-05 12:21:09 -04:00
33753881e2
Empi 55 deactivate merged ( #1883 )
2020-06-03 13:12:01 -04:00
86ef0ec0e2
Correct transaction processing in multitenant server ( #1884 )
...
* Correct transaction processing in multitenant server
* # d codethe npm registry for updates every day (weekdays)
2020-06-03 10:37:47 -04:00
c374383b37
Allow AuthorizationInterceptor to properly authorize GraphQL statements ( #1864 )
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* Allow AuthorizationInterceptor to properly authorize GraphQL statements
* Add changelog
2020-05-22 20:40:37 -04:00
d1b963321a
MVP EMPI implementation ( #1857 )
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EMPI Initial Implementation (still plenty of known gaps)
2020-05-22 15:03:20 -04:00
63ff0ede9c
Make diff operation work securely ( #1859 )
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* Make diff operation work securely
* Build tweak
* FIx tests
2020-05-21 19:20:48 -04:00
ce5ade53d9
Fix #1855 - StructureDefinition search not working ( #1858 )
2020-05-21 09:35:37 -04:00
5b2181a563
Implement FHIR Patch ( #1850 )
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* Start working on FHIRPatch
* More work on fhirpatch
* Work on FHIR Patch
* Add patch
* Test fixes
* Test fixes
* Get tests fixed
* Chnage to trigger a build
* Compile fix
* Dependency version fixes
* Test fix
* COmpile fix
* Try to fix build
* Test fix attempt
* Another build attempt
* Another build tweak
* Cleanup
2020-05-20 19:43:55 -04:00
cc92bd7b07
Revert "Start working on FHIRPatch"
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This reverts commit b3f6e7d521
2020-05-17 11:56:50 -04:00
b3f6e7d521
Start working on FHIRPatch
2020-05-17 11:44:06 -04:00
52c8e3551c
Version bump to 5.1.0-SNAPSHOT
2020-05-15 14:43:32 -04:00
fe0e07a313
Bump to 5.0.1
2020-05-15 05:47:01 -04:00
1d13e29ac0
Version bump to 5.1.0-SNAPSHOT
2020-05-12 20:04:20 -04:00
d631ecff4a
Prepare for 5.0.0
2020-05-12 11:49:18 -04:00
78fa296f1f
License header updates
2020-05-07 19:37:16 -04:00
6cc07b6689
Make binary storage work for bulk export ( #1836 )
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* Make binary storage work for bulk export
* Add changelog
* Build fixes
* Test fix
* Test fix
* Test fix
2020-05-07 19:20:22 -04:00
a77aa6a28e
Multitenancy Ticket 2 - #1813 ( #1821 )
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* Work on multitenancy
* Second ticket started
* More multitenancy work
* Work on tenancy security
* Work on multitenancy
* Test fixes
* Add docs
* cs tweak
* Multitenancy fixes
* Add debug log
* Fix build
* Add headers
* Add partition selection interceptor hook
* Update hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/api/Constants.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Account for review comments
* Resolve FIXMES
* Work on tests
* Test fixes
* A bit more cleanup
* Work on multitenancy
* Update hapi-fhir-docs/src/main/java/ca/uhn/hapi/fhir/docs/ClientExamples.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/client/examples.md
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Address review comments
* Allow disabling text modifier indexing
* Add changelog
* Docs fixes
* Address review comment
* Resolve merge conflicts
* Merge master
* Compile fix
* Test fix
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-05-05 15:12:15 -04:00
9ace4889bc
enhance constructor, so an existing InterceptorService could be passed in ( #1749 )
2020-05-01 07:36:45 -04:00
e439891ea2
Add test
2020-04-29 15:21:54 -04:00
ea817de68a
Extend support for additional forwared headers x-forwarded-port and ( #1788 )
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x-forwarded-prefix
2020-04-29 09:01:39 -04:00
6226381595
Merge branch 'master' into ja_20200206_multitenancy
2020-04-21 20:54:56 -04:00
c7de85339c
Work on review comments
2020-04-21 20:18:06 -04:00
c716216b34
Adjust return type for fluent delete() operation ( #1805 )
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* Add cascading delete to client
* Add changelog
* Client delete should return MethodOutcome
* Rerturn more appropriate type for delete operations
* Refactor cascade detection to be reusable
2020-04-21 15:23:11 -04:00
4abebf2247
Docs cleanup
2020-04-21 09:28:52 -04:00
bbab016ca6
Rename config
2020-04-20 12:38:04 -04:00
7248b4e18e
Finish docs
2020-04-20 11:02:27 -04:00
e0b419354f
Bump up hamcrest version and force the use of the latest version
2020-04-17 13:59:22 -04:00
68f437177d
Add license header
2020-04-17 09:49:03 -04:00
497757501b
Improve search method binding priority ( #1802 )
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* Work on search method binding priority
* Work on method priority
* Work on binding priority
* Test fixes
* Add changelog
* Test fixes
* compile fix
* One more comple fix
* Test cleanup
* Test fix
2020-04-17 09:28:33 -04:00
8cdc3a72ce
Fix #1794 - Client ID and Server ID mode clash ( #1795 )
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* Fix #1794 - Client ID and Server ID mode clash
* Try to track down intermittent test failure
2020-04-09 09:31:13 -04:00
b78205c218
Ongoing cleanup
2020-04-06 17:00:45 -04:00
40d0c27ae3
Work on subscription cleanup
2020-04-05 18:43:27 -04:00
e1142f4043
Start work on subscription cleanup
2020-04-02 05:31:12 -04:00
0021561fb1
Raise an error on including invalid query string parameter(s) in read operations
2020-03-31 20:05:05 -04:00
fe48313100
Add response size capturing interceptor ( #1776 )
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* Work on capturing repsonse sizes
* Interceptor complete
* Add changelog
* Test fix
2020-03-30 11:24:10 -04:00
eaaddaf7ca
Fix #1763 - Include bundle type in summary=count responses ( #1773 )
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* Fix #1763 - Include bundle type in summary=count responses
* Test fix
2020-03-24 16:24:41 -04:00
14316147c5
Resolve some docs issues
2020-03-23 10:34:12 -04:00
c2ae5a8326
Add FHIRPath evaluation interceptor ( #1769 )
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* Add FHIRPath evaluation interceptor
* Add changelog
2020-03-22 12:57:24 -04:00
22413911bf
Validation api changes ( #1719 )
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* Validation enhancements
* Work on validation api reworking
* Keep working on validation API
* Keep working on new term API
* Work on validation api
* Ongoing work on validation
* Work on integrating validation
* Work on validation API
* Add to validation API
* Work on validation
* Work on API
* Work on validation
* Work on validation API
* Work on validation API
* Work on validation api
* Work on validation API
* Work on validation api
* Validation API changes
* Work on API
* More work on validationo API
* Work on validation API
* FIxes
* WOrk on validation api
* Work on validation API
* Tests passing!
* More cleanup
* More validation API changes
* Fix intermittent test failure
* Package reorg
* Validation API work
* Work on doocumentation
* Work on API
* More work on new validation API
* Fix errorprone-reported error
* Test fixes
* Documentation updates
* Documentation tweaks
* Work on API
* Bean name adjustments
* Build fixes
* Some test fixes
2020-03-17 13:28:59 -04:00
64f07e4dc0
Includes performance enhancement ( #1702 )
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* Includes performance enhancement
* Add changelog
* Test fix
* Fix typo
* A few coverage cleanups
* Test fix
* Fix changelog
2020-02-18 14:11:48 -05:00
ddc7b601ee
Version bump to 4.3.0-SNAPSHOT
2020-02-16 19:23:22 -05:00
4fd80cfca7
Bump to 4.2.0
2020-02-16 19:00:15 -05:00
c5c1e3196b
Resolve FIXMEs ( #1705 )
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* Resolve FIXMEs
* Test fixes
* Test fixes
* Clean up unused code
* Add some test coverage
* Test fix
* Test fix
* Avoid intermittent
2020-02-09 08:39:46 -05:00
785997aade
Resource methods in interfaces (default implementations) are now picked up when registering providers
2020-02-04 17:23:22 -05:00
aad5a30a3d
Support count=0 ( #1670 )
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* Support count=0
* Fix LGTM issue
2020-01-15 14:52:32 +08:00
9c7f5e1b9b
License header updates
2020-01-12 10:15:08 -05:00
e935c75025
Changed BaseResourceReturningMethodBinding to accept IBaseBundle as a bundle resource.
2020-01-02 14:39:29 -05:00
0c83c1ce44
Changed BaseresourceReturningMethodBinding to accept IBaseBundle as a bundle resource.
2020-01-02 14:15:48 -05:00
dfc14f5002
Fix compile
2019-12-18 18:35:27 -05:00
e9811c6377
One more trim
2019-12-18 17:50:30 -05:00
f2b7846973
Trim subrequest
2019-12-18 17:21:47 -05:00
d277d3fed5
Docs updates
2019-12-10 16:10:09 -05:00
976740955c
Make constructor of 'Verdict' public. Fixes gh-1621
2019-12-07 18:08:45 +05:00
f58fba6f04
Some test cleanup ( #1616 )
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* Some test cleanup
* Add test
* More test logging
* More docs cleanup
* Add test logging
2019-12-02 11:00:18 -05:00
5f803f7e68
Documentation updates
2019-11-26 02:00:22 -03:00
51b608188b
Some CI surefire improvements ( #1602 )
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* Some CI surefire improvements
* Build tweak
* More tweak
* Update azure-pipelines.yml for Azure Pipelines
* Update azure-pipelines.yml for Azure Pipelines
* One more CI attempt
* Update azure-pipelines.yml for Azure Pipelines
* Tweak command line
* Another build test fixc
* More build cleanup
2019-11-23 19:51:02 +01:00
a2f77b23d2
Fix #1583 - Index local refs in canonical types ( #1593 )
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* Fix #1583 - Index local refs in canonical types
* Add fix to pre-expansion
* Test fix
* Rework ID handling
* Test fixes
* Fix test
2019-11-23 16:32:37 +01:00
497a96ae68
Version bump for next round of development
2019-11-12 22:09:21 -05:00
f99ad981b5
Version bump to 4.1.0
2019-11-12 16:08:20 -05:00
89b25ce828
License updates
2019-11-02 17:34:05 -04:00
80bfb9af37
Issue-1077: Make CapabilityStatementProvider use the closest common superclass of provided resources when generating rest.resource.profile, instead of always using the base definition.
2019-11-01 10:20:16 -04:00
9d4df3e470
Add a test
2019-10-30 05:40:32 -04:00
ffb15682de
Update license headers
2019-10-26 14:48:08 -04:00
2b3c775b77
Some cleanup and fix a test
2019-10-26 12:45:57 -04:00
9cc945b5bd
Merge branch 'osgi-server-work' of https://github.com/bdenton/hapi-fhir into bdenton-osgi-server-work
2019-10-25 17:05:09 -04:00
74c03b5bb7
Add a test
2019-10-24 08:32:52 -04:00
91ec0a6922
Test fix
2019-10-24 08:32:52 -04:00
385a885abf
Add ability for resource source to be specified by header
2019-10-24 08:32:52 -04:00
306b02e147
Additional tracing statements.
2019-10-22 20:41:52 -04:00
9e44049847
Allow for improved overriding of RestfulServer#newRequestDetails
2019-10-22 18:09:21 -04:00
9b94e4e26d
Allow uploading term deltas using CS resource ( #1555 )
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* Work on accepting codesystem reources for delta operations
* Ongoing work on term uploader
* Restore the ability to use CodeSystem resources for the delta
* Add tests
* Fix NPE
* Test fixes
2019-10-22 17:11:39 -04:00
73961072a6
Handle invalid chains on custom search params ( #1553 )
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* Handle invalid chains on custom search params
* Add some more tests
* One more test fix
2019-10-21 21:21:33 -04:00
5dcbed0438
Fix foreign key handling when dropping tables
2019-10-17 15:52:35 -04:00
9a050461a8
Make cache timeout configurable
2019-10-15 09:34:48 -04:00
82a6221e5b
Provided unit test for cache controlled metadata
2019-10-15 07:58:20 -05:00
6a2242656f
Added evaluation of Cache-Control HTTP header
2019-10-15 07:58:20 -05:00
2725797610
Implement Terminology Delta Operations ( #1536 )
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* Start refactoring terminology delta operations
* Work on delta operations
* Work on concept saving
* Split term services into smaller services
* Work on term delta operations
* Work on term svcs
* Work on term operations
* More work on delta uploader
* Add a test
* Wrk on term service
* Fix compile error
* Some refactoring
* Test fix
* Test fix
* Test fixes
* Test fix
* Test fixes
* Test fixes
* Work on delta
* Work on tests#
* Test fixes
* Improve resequencing logic
* Build test
* More testing
* More build testing
* More work on tests
* CHange test logging
* Fix term service PID issue
* Update src/changes/changes.xml
Co-Authored-By: Diederik Muylwyk <diederik.muylwyk@gmail.com>
* Address review comment
* Some cleanup
* Test fix
* Fix some tests
* Test fixes
2019-10-14 19:14:41 -04:00
f81aaa7f00
refactor "split" packages; create osgi bundle for server framework
2019-10-12 14:08:41 -07:00
92c6b88964
Add test
2019-10-10 07:16:18 -04:00
e656863a73
Correct bugs reported by LGTM ( #1533 )
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* Correct bugs reported by LGTM
* Add some tests
* A few more updates
* YAML update
* Test fixes
* One more test fix
* Test fix
2019-10-09 19:26:57 -05:00
861ed36f00
Allow patches to be authorized for DSTU3 transactions ( #1529 )
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* Allow patches to be authorized for DSTU3 transactions
* Add changelog
2019-10-08 14:29:27 -05:00
3c4c6f7925
Don't allow Content-Location header to dictate version for updates
2019-10-04 09:55:14 -04:00
150c865f68
License header updates
2019-10-03 21:20:08 -04:00
94b8d6f84d
FIXME
2019-10-03 12:17:37 -04:00
d1deedf247
pre-review cleanup
2019-10-03 12:14:11 -04:00
566443d0fe
move BundleUtil back
2019-10-03 12:05:26 -04:00
98c76a4d49
Test passes
2019-10-03 12:03:38 -04:00
29e7cdc476
Added ability to modify URLs in BundleUtil
2019-10-03 09:46:32 -04:00
8e9b7b590c
[(servermethodbinding)] Fix method binding to handle special search names(_id:[modifier], _language:[modifier])
2019-10-02 05:51:15 -04:00
066c9a7fb7
Improvements to AutohrizationInterceptor create handling
2019-09-30 15:07:23 -04:00
5509478566
License header update
2019-09-30 10:13:09 -04:00
557a8ccc66
Add top level support for ElasticSearch ( #1514 )
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* ElasticSearch work
* Add ElasticSearch properties builder
* Clean up POM
* Remove redundant project
* Try to troubleshoot embedded elasticsearch
* Another test attempt
* Add credentials to elasticsearch config
* Work on lastn
* Address review comments
* A couple of test fixes
2019-09-30 09:30:39 -04:00
8657afb01e
Fix intermittent test failures regarding search ( #1509 )
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* Add some logging
* Add more test logging
* Work on some test logging
* Fix compile error
* Work on codecov
* Work on codecov
* Remove test debug messages
2019-09-25 20:15:21 -04:00
57377f5557
Fix #1483 - Don't let RP methods handle a request with includes if the
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method doesn't understand them
2019-09-25 10:54:37 -04:00
0b630f6851
Merge branch 'searchmethodbinding_test' of https://github.com/tuomoa/hapi-fhir into tuomoa-searchmethodbinding_test
2019-09-25 09:01:38 -04:00
a989a746b0
Fix #1494 - Upgrade to new :recurse syntax for R4 include/revinclude
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statements
2019-09-20 09:38:29 -04:00
6e98c02862
Fix #1495 - Avoid NPE in RuleBuilder
2019-09-20 08:57:01 -04:00
eddb98084d
Move PreferReturnEnum back to original location to avoid regressions
2019-09-19 15:48:58 -04:00
4a751cbfc5
Integrate Bulk Export ( #1487 )
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* Start working on subscription processor
* Work on new scheduler
* Test fixes
* Scheduler refactoring
* Fix test failure
* One more test fix
* Updates to scheduler
* More scheduler work
* Tests now all passing
* Ongoing work on export
* Ongoing scheduler work
* Ongoing testing
* Work on export task
* Sync master
* Ongoing work
* Bump xml patch version
* Work on provider
* Work on bulk
* Work on export scheduler
* More test fies
* More test fixes
* Compile fix
* Reduce logging
* Improve logging
* Reuse bulk export jobs
* Export provider
* Improve logging in bulk export
* Work on bulk export service
* One more bugfix
* Ongoing work on Bulk Data
* Add changelog
2019-09-17 16:01:35 -04:00
2c3283fd34
Add test for search method binding matching
2019-09-12 13:36:56 +03:00
0843a2b02d
Avoid leaking details when canSeeReource rejects a resource from consent
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service
2019-09-10 11:14:44 -04:00
7e41951508
Create utility method for accessing the reqyest detail
2019-09-09 15:02:12 -04:00
7d162c50db
Don't guess content type for create/put
2019-09-05 14:47:04 -04:00
9428430822
Add support for Resource.meta.source ( #1438 )
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* Work on indexing source
* Work on tests
* Refactor query count tests
* Unit test fixes
* Add some tests
* DAO fix
* Fix compile error
* Unit test fix
* Cleanup
* Test fix
* Fix compile error
* One more test fix
2019-08-21 11:17:43 -04:00
afb682dfe9
Handle AuthorizationInterceptor rejection of by-type reads on the wrong type earlier in the process
2019-08-15 09:16:45 -04:00
e1b43d811f
Version bump to 4.1.0-SNAPSHOT
2019-08-14 14:06:06 -04:00
3f22456b0f
Bump version to 4.0.0
2019-08-14 11:06:26 -04:00
b127867ef7
Fix responsehighlighterinterceptor to work with graphql
2019-08-13 18:00:30 -04:00
94c498a744
A but more tweaking to the graphql interceptor
2019-08-13 16:05:33 -04:00
01a6aa8f5b
Test fix
2019-08-13 14:54:35 -04:00
b4fece0ae9
Add interceptor hook for graphql calls
2019-08-13 14:46:50 -04:00
bb20c2134b
Issue-1387: Read version from resource meta when deciding whether to return 304 on read
2019-08-13 05:28:03 -04:00
0c9e5ec1ea
Support GraphQL for R3/4/5 ( #1424 )
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* Work on grpahql enhanbcements
* Add some more chars to the sanitizer function
* Add changelog
2019-08-12 08:24:32 -04:00
dd0cb10dbb
validate operation ignores parameter profile ( #1417 )
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* This should be working now - need to check tests
* Add a changelog and some docs
* One more test fix
* Tests should be passing
* Fix compile
* Test fixes
* Ignore outdated DSTU2 validation test
2019-08-07 15:31:59 -04:00
a4ca5374ec
Add terminology delta operations ( #1401 )
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* Start work on delta operations
* Add changelog
* Some build fixes
* Move upload terminology command to CodeSystem resource
* Updates
* Some test fixes
* Add changelog
* Some test fixes
* More test fixes
* Test fix
* Add additional tests
* Transaction boundary fixes
2019-07-29 17:46:42 -04:00
8158292665
Allow operations to better work across multiple versions of FHIR
2019-07-26 05:46:37 -04:00
5bf4fa22e7
Allow patching in tranactions
2019-07-18 16:41:07 -04:00
87ab796309
Updates to validating interceptor
2019-07-18 12:57:30 -04:00
9fc10242b7
Convert validating intercwptors to use new framework
2019-07-18 08:25:35 -04:00
55c0d5b604
Add binary storage for Attachments ( #1386 )
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* Have this working now
* Add utility method
* Build fixes
* Add changelog
2019-07-17 18:31:17 -04:00
0fb8db11a2
Add new pointcut: PROCESSING_COMPLETED
2019-07-09 14:32:11 -04:00
9e7cabd464
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-07-07 14:59:57 -04:00
44a97f3621
Still fire appropriate interceptor methods if the cached
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capabiliotystatement is being returned
2019-07-07 14:59:26 -04:00
9fcbdb0cdc
License header updates
2019-07-07 14:41:57 -04:00
73daec633f
Test fix
2019-07-07 13:07:27 -04:00
34f7d4ddbd
Refactor ServerConformanceProvider so that it no longer keeps any state
2019-07-07 12:57:31 -04:00
24536941c2
Test the new isEmpty() method on IBundleProvider
2019-07-05 17:15:02 -04:00
1c7c83cd8e
Add an isEmpty() method to IBundleProvider
2019-07-05 16:16:39 -04:00
dff2fdd3cf
GET RID OF TRAILING LICENSE HEADER SPACES ONCE AND FOR ALL
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YESSSSSSSSSSSSS
2019-07-05 11:19:51 -04:00
e762ac9d10
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-07-04 09:01:35 -04:00
b3cb533ada
Store details in RequestDetails
2019-07-04 09:01:17 -04:00
f1848fb1ad
Include version ID in response for deleted resource
2019-07-03 14:44:12 -04:00
56aaef641c
Add request ID
2019-07-02 21:32:28 -04:00
742389642d
Add tests for delete conflicts and authorizationinterceptor
2019-07-01 10:49:38 -04:00
5c0e54fb86
Improve processing of deletes in AuthorizationInterceptor
2019-06-29 14:40:51 -04:00
ccf491b3ae
Add parent pom to BOM
2019-06-29 13:50:43 -04:00
1fd99dac63
Enable optional cascading deletes on JPA server ( #1363 )
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* Start working on cascading deleets
* WOrk on cascading deletes
* Work on cascading deletes
* Enable cascading deletes
* Cascade deletes almost working
* FIx test
* Test fix
2019-06-28 17:32:39 -04:00
6d8465abe6
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-06-27 18:23:54 -04:00
5910131319
License header updates
2019-06-27 18:23:45 -04:00
53b47ed580
Ensure that parsed reesource is available to interceptors
2019-06-27 18:23:10 -04:00
10d969c514
Add Consent Service ( #1359 )
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* Initial consent svc
* Ongoing consent svc work
* Add docs
* Ongoing consent service work
* Work on consent service
* More work on consent svc
* License header updates
* Ongoing consent svc work
* Some test fixes
* Some test fixes
* More work on consent svc
* Tests working
* Test fix
* Propagate RequestDetails to everything in JPA server
* More interceptor tweaks
* Fix compile error
* One more tweak to captured SQL
* Ongoing interceptor tweaks
* Ongoing interceptor tweaks
* More interceptor tweaks
* Interceptor tweaks
* Tweaks to tests
* Fix tests
* Test fix
* Raise warnings when encoding extensions with missing values
* Consent service work
* More interceptor tweaks
* Consent interceptor tweaks
* Add logging to test
2019-06-27 16:35:29 -04:00
e76b1dacb3
License header updates
2019-06-22 18:31:16 -04:00
4ad1808da3
Propagate RequestDetails to everything in JPA server ( #1358 )
2019-06-22 15:18:06 -05:00
2543f27697
Add a test
2019-06-21 15:38:16 -04:00
c7798fee48
Test fix
2019-06-18 05:40:00 -04:00
6724fd0348
Implement the $subsumes operation ( #1344 )
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* Implement the $subsumes operation
* Fix #976
2019-06-17 17:31:24 -04:00
b2e99cf035
Add support for conditional patch ( #1348 )
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* Add support for conditional patch
* Add changelog
* Test fix
2019-06-17 16:12:05 -04:00
2bf680509b
DeleteConflict hook, SearchableHashMapResourceProvider, and in-memory searching ( #1341 )
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* Make IBundle list interface more flexible
* Make matchResourceLinks visible
* Make matchResourceLinks visible
* Pull in-memory matching functionality out of subscription module into dedicated classes in searchparam module
* Added more accessors to version independent resource classes
* improved forcedid matching (needs to be verified by James)
filter out nulls from HashMapProvider.searchAll() (hopefully no tests depend on this)
* add AnyComposition
* cleanup of Any classes
* create searchparam config so people can use that module without using subscriptions
* create searchparam config so people can use that module without using subscriptions
* fix broken test
* added derivedFrom
* renamed daoRegistry.getResourceDaoIfExists to getResourceDaoOrNull
also added method to add a new dao to the registry and retrieve registered types
* TokenParam.equals
* add error check to searchable hashmap resource provider
* added support for R4
* add successor to measure
* delete conflict hook
start with failing test
* test passes.
hook is called.
* added delete conflict hook
all delete conflict tests pass
* added javadoc
* Performance test
* test bad interceptor case
* typo
* rename criteria matcher
* added support for multiple topics
* fix method name
* add effective period
* Temporarily excluding StressTest from build to try to get Travis under time limit
* change log
* review feedback
* review feedback
* review feedback
2019-06-13 13:59:51 -04:00
5752a6e2b3
reported issue with proposed fix that breaks tests ( #1243 )
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* reported issue with proposed fix that breaks tests
* Fix spelling
* Merge my changes into this
* Correctly check referential integrity on deletes
* Add one more test
2019-06-04 20:40:20 -04:00
50a8c66bf5
Version bump to 4.0.0-SNAPSHOT
2019-05-30 17:13:03 -04:00
73aa53be8f
Release 3.8.0
2019-05-30 16:50:04 -04:00
86aa71d570
Merge branch 'master' into deprecated
2019-05-29 21:42:02 -04:00
66a669949d
Add docs - Fix #1309
2019-05-29 21:16:33 -04:00
cb8634f26f
Ja interceptor callback fix ( #1308 )
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* Interceptor callback fix
* Ensure that interceptor methods are called after a transaction
2019-05-14 18:47:11 -04:00
2e50bf6bb0
Un-deprecate a method that should not have been deprecated
2019-05-04 09:49:18 -04:00
f3f5c570b1
A couple of compile glitches
2019-04-24 21:35:49 -04:00
5a9fa4e549
Interceptor tweaks
2019-04-24 21:19:47 -04:00
738c2c1797
Interceptor framework refactoring ( #1287 )
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Interceptor framework overhaul
2019-04-24 14:32:30 -04:00
c8f2e4bbc9
Return HTTP 400 for missing body on POST and PUT
2019-04-14 12:32:09 -04:00
ce44c35afc
Add @Deprecated annotation to IServerInterceptor::outgoingResponse(RequestDetails, IBaseResource, HttpServletRequest, HttpServletResponse) to match comment.
2019-03-18 21:35:36 -04:00
64facdab0a
Disabling test logging
2019-03-06 16:14:32 -05:00
3972e17e62
Add "is trusted" property to server exceptions
2019-03-01 13:58:13 -05:00
94f9ffa977
Avoid paging links when offset is artificially set very high
2019-02-25 20:44:22 -05:00
c6fcb4fcbf
Allow canonical subscription to hold multiple extensions with the same
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URL
2019-02-16 15:28:39 -05:00
485335e975
Allow terminology service to work without having Lucene enabled for
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simple ValueSet expansions
2019-02-14 20:47:28 -05:00
810f1ad969
Improvements to elements parameter as well as adding attributes to
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RequestDetails
2019-02-07 16:45:59 -05:00
0f8c8d18e2
Bump version to 3.8.0-SNAPSHOT
2019-02-06 20:02:28 -05:00
207015c3af
Version bump to 3.7.0
2019-02-05 21:36:38 -05:00
4498335ae5
Elements query cleanup
2019-02-05 14:16:47 -05:00
d4af1ee2a3
Add tests and license headers
2019-02-04 16:34:39 -05:00
e401ec86e4
Enhanced elements ( #1192 )
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Squashed merge: Add elements exclude mode
* Start working on elements enhancement
* Work on elements projection
* Work on elements filter
* Feature is now working
* Just some cleanup
* Address compile issues
2019-02-03 16:41:33 -05:00
9cf64f78d0
Deprecate a bad setter on RetfulServer, fix a paging issue, and add a
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disabled unit test to the subscription matcher
2019-01-21 14:46:17 -05:00
cd1e0e881c
Add headers
2019-01-19 18:31:17 -05:00
b8755615b2
Allow AuthorizationInterceptor to read patients if the user has read
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access to the individual instance
2019-01-14 13:53:08 -06:00
93bf2788ec
Add subscription narrowing interceptor and refactor RuleBuilder to be a
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bit cleaner
2019-01-12 14:23:26 -06:00
aee7b2b882
Make sure that sub-request transaction searches and reads preserve HTTP
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headers
2019-01-10 07:26:04 -07:00
ee52d6fb31
Add SearchNarrowingInterceptor
2019-01-09 20:20:46 -06:00
f8b232bb67
Issue 430: Generate OperationDefinitions for named queries, fix minor errors in generation of OperationDefinition for operations. Closes #430 .
2019-01-09 05:41:08 -05:00
62ae71c1c6
Allow authorizing delete operations via a transaction in
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AuthorizationInterceptor
2019-01-07 15:43:36 -05:00
a8a97ae6b2
Two test fixes
2019-01-07 09:18:11 -05:00
3d94761bcb
Improve response for transactions
2019-01-06 18:08:32 -05:00
b2c7a2003e
Prevent a nullpointerexception in AuthorizationInterceptor
2019-01-06 16:42:29 -05:00
39f2062802
FIx errorprone detected issues
2019-01-05 13:43:55 -05:00
8f8385627f
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-01-05 11:33:08 -05:00
98d93df12a
License header updates
2019-01-04 16:22:15 -05:00
5b8fee869e
Add config options for default Prefer header and _total param on server
2019-01-04 16:12:45 -05:00
3a3d503772
head operation should return 200OK response code instead of 400
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BadRequest
2018-12-21 05:40:35 -05:00
84a34eb3c9
Subscription module support ( #1147 )
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* Reorganizing packages and dependencies to support standalone subscription running within a CDR container where all hapi modules are on the classpath.
Moved Subscription registry out of interceptor and introduced SubscriptionLoader
* Created ActiveSubscription and moved cache bits into it
* Moved ExecutorQueue stuff out into its own class
* Add test and supporting code to validate SubscriptionConstants.EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION behaviour
* Added SubscriptionCheckingSubscriber
* Moved a few beans to @ComponentScan
* Replaced use of beanFactory with concrete factory classes
* Switched test to use subscribablechannel
* Added SubscriptionLoaderFhirClientTest
* Confirm that our SubscriptionProviderFhirClient works with a live fhir client
* Register interceptors with DaoConfig instead of RestServer.
Also, Rename @VisibleForTesting methods with ForUnitTest
* Fix triggering service so it uses new subscriptionmatcherinterceptor
* Renamed "Database" classes to "Dao"
* processing -> matching naming change
2018-12-18 13:09:06 -05:00
81e8131ffc
Fix broken test
2018-12-09 19:36:03 -05:00
67f5ba6aa0
Also allow ServeMediaResourceRawInterceptor to handle vread requests
2018-12-09 14:29:40 -05:00
19954fa252
Resolve failing test
2018-12-09 14:09:12 -05:00
b442982310
Add media interceptor
2018-12-08 18:49:58 -05:00
b2179b1696
Syntax fixes for the JPA migrator
2018-11-30 12:39:37 -05:00
b41c222880
Require explicit declaration of authorizationinterceptor operation rules
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on whether the response is authorized or not
2018-11-23 14:25:46 -05:00
ce3b7c82ce
Avoid issues when using subscription delivery in a serializing/queuing
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environment
2018-11-22 17:53:42 -05:00
2e030eebaa
Make sure that reindexing happens correctly
2018-11-21 12:06:10 -05:00
58388bb614
Allow client to return methodoutcome instead of resdource for operation
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call
2018-11-19 11:11:49 +01:00
67dbc802be
Better detection of binary content in ResponseHighlighterInterceptor
2018-11-18 14:32:54 +01:00
fad53c6669
Fix a test
2018-11-16 13:15:14 +01:00
0d0f67b299
Add GraphQL support to public server
2018-11-16 11:41:39 +01:00
02b23d74fd
Merge pull request #1117 from magnuswatn/logformatfix
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Fixed small log formatting error in ExceptionHandlingInterceptor.java
2018-11-15 13:38:07 +01:00
52265d248f
Fixed log formatting error
2018-11-15 12:14:33 +01:00
75210d614b
Bump to 3.7.0-SNAPSHOT
2018-11-12 22:37:52 -05:00
63af04a7b4
Prepare for 3.6.0 release
2018-11-12 05:40:55 -05:00
a3e79b5759
License updates only
2018-11-08 15:28:09 -05:00
17a7fd4285
Merge pull request #1071 from volsch/master
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Multiple values of a HTTP header are reduced to one value.
2018-11-08 13:27:36 -05:00
4b790eddb6
Add additional authorization test
2018-11-07 11:01:29 +01:00
4315900ac0
Merge branch 'philips-3.6.0'
2018-11-01 09:15:27 -04:00
3bfdc61866
Fix a couple of test failures
2018-11-01 09:15:03 -04:00
3f6960d82b
Add multithreaded migrator tool
2018-11-01 05:42:51 -04:00
31ef4c68e1
Merge branch 'philips-3.6.0' of github.com:jamesagnew/hapi-fhir into philips-3.6.0
2018-10-31 05:51:13 -04:00
8955a9e54d
Add threading to migrator
2018-10-31 05:50:50 -04:00
7acba90d15
Update search logic
2018-10-30 22:43:16 -04:00
6b1ea5b989
Add tests for operation method binding
2018-10-30 15:22:39 -04:00
b66e01ce65
Allow plain server @Operation methods to declare a wildcard so that any
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opeeration invocations will be direected to them
2018-10-29 10:36:32 -04:00
aa177c1421
Authorize batch operation in AuthorizationInterceptor
2018-10-19 09:45:56 -04:00
da2763d8c8
Merge branch 'master' into philips-3.6.0
2018-10-17 22:38:27 -04:00
99cd4ce5f7
Allow for _total parameter
2018-10-17 09:47:35 -04:00
4e252063b8
Allow transactions and batches with transaction permission in
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AuthorizationInterceptor
2018-10-16 19:54:55 -04:00
796b12e33e
Fix bug in $everything processing
2018-10-15 05:44:53 -04:00
51a69f0dc9
Fixes to migrator and count logic
2018-10-13 12:02:19 -04:00
ca54409ce3
Add some null checks to the RestfulServer
2018-10-05 08:33:00 -04:00
62d6771814
Use a select count query for summary count searches in JPA server
2018-09-29 21:58:14 -04:00
3e445faf47
Squashed commit of the following:
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commit df641506885e09e63f80efc6c658d01a1a3a8142
Author: James Agnew <jamesagnew@gmail.com>
Date: Sat Sep 29 13:47:22 2018 -0400
Shrink validation resources
commit 4c1550eafa26f4235b4b8804741aecc03276b5c6
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 22:45:28 2018 -0400
Updates to get R4 working
commit 8332f15291006691ed9b07ead3e3524b0fc85510
Author: jamesagnew <jamesagnew@gmail.com>
Date: Fri Sep 28 09:02:13 2018 -0400
Ongoing work on gettign R4 working
commit f7146cab7aed937bb625a8aec95744d76db00041
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 05:21:01 2018 -0400
More work on sync
commit f48de4a10b1bab2584fee813017d9b27b237bfa9
Merge: 9e4f3cc722 aacb78b779
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:29 2018 -0400
Merge branch 'sync_r4' of github.com:jamesagnew/hapi-fhir into sync_r4
commit 9e4f3cc722668aae31a77b19bf9b032af3ae01b0
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:19 2018 -0400
Fix compile error
commit 7ec29e0ceda8f9013cbabb95767cbe15b4b81303
Merge: 23f7517325 002c4b3ff7dfb4de86f1
2018-09-29 13:48:35 -04:00
706e004b9d
Bump to 3.6.0-SNAPSHOT
2018-09-19 10:24:48 -04:00
321e88c811
License header updates
2018-09-14 05:25:07 -04:00
ce6a9dbc36
Fix regression from new jetty version
2018-09-11 08:27:34 -04:00
daef975734
Version bump to 3.5.0
2018-09-08 07:22:21 +08:00
b183bed52f
Multiple values for one HTTP header were reduced to the last value.
2018-09-06 19:33:34 +08:00
54c07263b6
Increase code lengths
2018-08-26 12:32:35 -04:00
df651c830e
Remove dynamic mode
2018-08-19 17:35:08 -04:00
78a7d64d2c
Merge pull request #1022 from alinleonard/master
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Patch operation on OperationsWhichAllowPreferHeader
2018-08-12 17:55:16 -04:00
7eb36c3392
Work on subscription
2018-08-11 16:14:53 -04:00
Tadgh
Ibrohim Kholilul Islam
James Agnew
Ken Stevens
Tadgh
gematik FuE
Thomas Papke
Jafer Khan
ttn
Jennifer Chan
Stig Rohde Døssing
Anthony Sute
jvi
bdenton
Petro Mykhaylyshyn
Tuomo Ala-Vannesluoma
Stig Rohde Døssing
Ken Stevens
Ken Stevens
Drew Mitchell
Corina Dalaban
Magnus Watn
Volker Schmidt