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2653 Commits

Author SHA1 Message Date
Tadgh 6e43c5348c Add missing imports from import reorganization 2020-06-09 19:27:16 -07:00
Tadgh 6fc5b753e5 Readding imports 2020-06-09 19:20:43 -07:00
Tadgh c36e1d2899 More code review comments 2020-06-09 19:18:06 -07:00
Tadgh 942fc313ec Code review comments 2020-06-09 19:00:41 -07:00
Tadgh d90987368a
Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/bulk/job/JobExistsParameterValidator.java 
Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-06-09 16:29:15 -07:00
Tadgh b7cea688f6
Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/bulk/job/JobExistsParameterValidator.java 
Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-06-09 15:52:37 -07:00
Ken Stevens 7fdd0f1753 Merge remote-tracking branch 'remotes/origin/master' into spring-batch-integration 2020-06-09 15:52:54 -04:00
Ken Stevens 57f2002b84 organize imports 2020-06-09 15:49:11 -04:00
Tadgh b1d2ab7619 Add invalid parameter validator 2020-06-09 11:02:37 -07:00
Tadgh a25a1064f8 remove constant 2020-06-09 10:22:31 -07:00
Tadgh 4f59c38692 Remove comment 2020-06-09 10:20:41 -07:00
Tadgh 7273457ea7 Rework to read and process larger chunks 2020-06-09 09:55:10 -07:00
ianmarshall 0540c9e205 Merge remote-tracking branch 'remotes/origin/master' into im_20200605_db_blob_mssql 2020-06-09 12:43:05 -04:00
ianmarshall 97e6d967e9 Improve updated JUnit test. 2020-06-09 11:52:51 -04:00
ianmarshall 64aa0feb5d Fix for issue of persisting blob data types to MS SQL databases. 2020-06-09 11:06:01 -04:00
ianmarshall 122bd97344 Changes recommended during code review. 2020-06-09 09:59:03 -04:00
Tadgh 278a1070ae :Merge branch 'master' into spring-batch-integration 2020-06-08 17:16:11 -07:00
Tadgh 25fa0377df tidying 2020-06-08 17:02:37 -07:00
Tadgh 864c9c2cb8 Add task executor to partition step 2020-06-08 16:35:15 -07:00
Tadgh 44aa688a20 Final config layout of Bulk Export Batch job 2020-06-08 15:59:08 -07:00
ianmarshall c86e46b196 Add documentation and remove requirement for max parameter (defaulted to 1 now). 2020-06-08 18:08:02 -04:00
ianmarshall 30dd858f17 Add close method for Elasticsearch service. Fix the partial code match. 2020-06-08 15:07:02 -04:00
ianmarshall 4982e67a0f Merge remote-tracking branch 'remotes/origin/master' into im_2020601_lastn_code_text_filter 2020-06-08 09:26:55 -04:00
ianmarshall 56cbc5149b Add support for partial code description matching. 2020-06-08 09:24:09 -04:00
Tadgh 4405e50db9 wip 2020-06-05 15:53:06 -07:00
Ken Stevens 558f419955
Empi 54 not duplicate (#1900) 
add operation to unduplicate persons
 2020-06-05 12:21:09 -04:00
jamesagnew 5483c99e00 License header updates 2020-06-05 05:47:20 -04:00
James Agnew 21330a0a22
Transaction create performance improvement (#1899) 
* Work on perf issue

* Improve write performance for large bundles with tags

* Add changelog

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_1_0/1899-improve-write-xact-perf-with-tags.yaml

Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/util/MemoryCacheService.java

Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/util/MemoryCacheService.java

Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>

* Test fix

* Test fixes

* Test fixes

Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
 2020-06-05 05:26:06 -04:00
Tadgh 7ed65b0080 partially done writer, working out size-based chunking 2020-06-04 20:58:06 -07:00
ianmarshall 549993886d Fix merge conflicts. 2020-06-04 17:57:38 -04:00
ianmarshall 78b7f091ec Merge remote-tracking branch 'remotes/origin/master' into im_2020601_lastn_code_text_filter 
# Conflicts:
#	hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/search/lastn/LastNElasticsearchSvcMultipleObservationsIT.java
 2020-06-04 16:55:18 -04:00
Ken Stevens eb7b8e816b
Empi 58 no match create person (#1898) 2020-06-04 16:07:50 -04:00
ianmarshall 0a2f9d2697 Changes per code review plus fix for possible intermittent JUnit failures. 2020-06-04 15:24:41 -04:00
ianmarshall 9696af5dc0 Changed observation indexing to bypass hibernate search and removed Observation index tables. 2020-06-04 13:20:42 -04:00
ianmarshall 6e507bf642 Changed observation indexing to bypass hibernate search and removed Observation indexing tables. 2020-06-04 13:10:06 -04:00
Tadgh 7d46b3cc10 Partitioning Based on resource type complete. Still no threading 2020-06-03 14:58:42 -07:00
James Agnew 86ef0ec0e2
Correct transaction processing in multitenant server (#1884) 
* Correct transaction processing in multitenant server

* # d codethe npm registry for updates every day (weekdays)
 2020-06-03 10:37:47 -04:00
ianmarshall 8d5232bced Merge remote-tracking branch 'remotes/origin/master' into im_2020601_lastn_code_text_filter 2020-06-02 21:28:10 -04:00
Tadgh e8970bce46 Running batch job 2020-06-02 16:08:19 -07:00
jamesagnew 75a74bdd38 License headers 2020-06-02 18:20:56 -04:00
Tadgh 31b7e862d4 Remove extra beans 2020-06-02 15:00:56 -07:00
Tadgh bb863f26fa Initial run through the first part of batch integration 2020-06-02 13:44:23 -07:00
ianmarshall bfc5f93ec8 Enable filtering $lastn operation by Observation effective date. 2020-06-02 16:39:06 -04:00
ianmarshall 2e709a50c0 Enable filtering $lastn operation by Observation effective date. 2020-06-02 16:37:07 -04:00
Tadgh f8d699e13b Initial working commit passing jobs to spring batch 2020-06-01 15:51:09 -07:00
Tadgh 0fc2e04e65 wip 2020-06-01 12:13:55 -07:00
Tadgh aa7d1cbcb7 Wip getting tasks built 2020-06-01 11:32:36 -07:00
ianmarshall f48214deda Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch 
# Conflicts:
#	hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
 2020-05-29 23:54:11 -04:00
ianmarshall a4811f1508 Changes per code review. 2020-05-29 23:47:44 -04:00
Tadgh a306825625 moving dependencies around. Get non-persisted batch working 2020-05-28 12:10:52 -07:00