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7569 Commits

Author SHA1 Message Date
James Agnew 273a5bbbd7
Add BundleUtil utility method (#2356) 2021-02-04 13:13:25 -05:00
James Agnew 92669b29da
Add elastic test (#2348) 
* Add elastic test

* Rework

* Add test
 2021-02-04 11:04:27 -05:00
Michael Buckley 7a0a252ad3 Revert noisy change. 2021-02-04 11:00:02 -05:00
Michael Buckley 50acfbede3 Reject invalid param prefix. 
An unrecognized param prefix had been silently ignored.
Reject it with a DataFormatException instead.
 2021-02-04 10:34:03 -05:00
Kevin Dougan SmileCDR ba41daf4bf
Added a dependency on info.cqframework:quick since we also need this JAR at runtime. (#2351) 2021-02-03 17:15:51 -05:00
Ken Stevens 3dac899e3a begin with failing test 2021-02-03 15:01:12 -05:00
Kevin Dougan SmileCDR dd13827290
Added changelog entry for -measure operation. (#2347) 2021-02-03 14:01:20 -05:00
James Agnew e195bdc065
Try to avoid codecov fluctuations (#2344) 
* Try to avoid codecov fluctuations

* Less slowdown

* Another build tweak

* Build tweak

* Container bump

* Another build attempt

* One more test
 2021-02-03 09:44:57 -05:00
jamesagnew c0142a67b1 Credit for #2340 2021-02-02 14:27:42 -05:00
Marcelo Avancini 0d00954852
Added @Inherited to ResourceDef annotation (#2340) 
This change avoids duplication of ResourceDef on custom resources, where there is no changes on resource name or profile.
 2021-02-02 14:25:07 -05:00
Tadgh 589d323175
Merge pull request #2345 from hapifhir/mimetype-to-mediatype 
Change name of mimetype to mediatype
 2021-02-02 13:01:23 -05:00
Tadgh fc148e9e53 Change name of mimetype to mediatype 2021-02-02 11:46:39 -05:00
jamesagnew 1c6592b9fa License header updates 2021-02-02 11:26:45 -05:00
James Agnew 0f31d106e5
Allow empty request details in JPA (#2343) 
* Allow empty request details in JPA

* Test fixes
 2021-02-02 11:00:14 -05:00
IanMMarshall 54fac48cc0
Merge pull request #2342 from hapifhir/im_20210201_oracle_migration_fixes 
Address migration issues affecting Oracle DB when flyway is disabled
 2021-02-02 09:18:05 -05:00
Kevin Dougan SmileCDR c46330f54b
add evaluate measure to smile using the ProviderConstants definition of evaluate-measure (#2341) 
* Make the dstu3 and r4 MeasureOperationProvider classes use the ProviderConstants definition for evaluate-measure.
 2021-02-02 08:01:27 -05:00
Kevin Dougan SmileCDR ca28a4fe6c
Add CQL evaluate-measure operation. (#2339) 2021-02-01 19:55:51 -05:00
Tadgh ca93cd8246
Merge pull request #2338 from hapifhir/2325-channel-import-mimetype 
ResourceOperation mimetype
 2021-02-01 17:56:01 -05:00
Tadgh c5299df4d3 Use constant 2021-02-01 16:31:35 -05:00
ianmarshall 40bc754051 Address gaps in migration that can occur with Oracle DB when flyway is disabled. 2021-02-01 15:52:41 -05:00
michelgleeson 8b924171e7
Merge pull request #2336 from hapifhir/add_prefix_and_suffix_to_human_name_search 
refactor and modify for prefix and suffix
 2021-02-01 14:59:14 -05:00
Mike G 3a04675def Merge branch 'master' into add_prefix_and_suffix_to_human_name_search 2021-02-01 13:44:09 -05:00
Tadgh 5e36d71e41 fix mimetype 2021-02-01 13:43:47 -05:00
jamesagnew d65ed820a5 Javadoc build fix 2021-02-01 12:13:47 -05:00
Mike G f61cb163ae refactor and modify for prefix and suffix 2021-02-01 12:11:11 -05:00
Frank Tao 1d835d82d6
Fixed Ucum Conversion NullPointerException issue (#2331) 
* Fixed Ucum Conversion NullPointerException issue

* Revoke:save value to the original table if it can't be normalized
 2021-01-30 19:30:12 -05:00
jamesagnew 8c5b54bf54 Fix broken changelog 2021-01-30 19:26:58 -05:00
Kevin Dougan SmileCDR 2308d8f44b
Merge CQL Initial Implementation Into master (#2330) 
* CQL initial implementation
 2021-01-29 16:35:38 -05:00
jamesagnew 5961fde2dd Docs tweak 2021-01-29 16:12:06 -05:00
Ken Stevens ba63f65115
changed $expand filter matching from left-match to contains match (#2327) 
* changed $expand filter matching from left-match to contains match

* changelog

* pure substring match is too generous (a regression test checked for that).  Tightened the match up to word boundaries.

* CLean up to avoid intermittent test failure

Co-authored-by: jamesagnew <jamesagnew@gmail.com>
 2021-01-29 12:37:54 -05:00
Marcel P d11515599a
Added FHIRPathResource Generator for R4 including Test. (#2310) 
Signed-off-by: Marcel Parciak <marcel.parciak@gmail.com>
 2021-01-29 11:05:05 -05:00
Tadgh 3cc9d08ebc Merge remote-tracking branch 'origin/master' into 2325-channel-import-mimetype 2021-01-29 11:02:54 -05:00
jamesagnew 589eb3158e Credit for #2310 2021-01-29 11:02:51 -05:00
Tadgh 96b4e5ab38
Merge pull request #2324 from hapifhir/single-threading-mdm 
Ensure Single threading mdm
 2021-01-29 10:01:56 -05:00
James Agnew 947622d25f
CLean up to avoid intermittent test failure (#2329) 
* CLean up to avoid intermittent test failure

* One more intermittent test fix
 2021-01-29 05:28:21 -05:00
jamesagnew 8854f344b3 Add test 2021-01-28 16:22:36 -05:00
Nick Goupinets 0be3f0e4e8
Merge pull request #2286 from hapifhir/ng_20201218_survivorship_poc 
Survivorship proof-of-concept implementation and optional manual override for GR merge
 2021-01-28 09:18:20 -05:00
Nick Goupinets 3be480c9f0 Merge remote-tracking branch 'origin/master' into ng_20201218_survivorship_poc 2021-01-27 16:47:40 -05:00
James Agnew 909d9f742c
Enable Auto-reference versions in JPA (#2323) 
* Automatic reference versions

* Auto reference versions

* resolve fixmes

* Add changelog

* Test fixes

* Test fixes

* Resolve fixmes

* Work on versioning

* Add support for _includes

* Update headers

* Change visibility

* One more tweak

* One more API tweak

* Fixes

* Account for review comments

* Fix errorprone reported issue

* Test fix

* Test fixes

* Test fixes
 2021-01-27 14:49:10 -05:00
Tadgh fdd965d9d2 Merge remote-tracking branch 'origin/master' into 2325-channel-import-mimetype 2021-01-26 17:53:20 -05:00
Nick Goupinets 04db4ed229 Merge remote-tracking branch 'origin/master' into ng_20201218_survivorship_poc 2021-01-26 09:18:20 -05:00
Tadgh 170d633181
Merge pull request #2326 from hapifhir/azure-pipelines 
Update snapshot-pipeline.yml for Azure Pipelines
 2021-01-25 14:32:01 -05:00
Tadgh e80e592d80 Skip tests 2021-01-25 14:31:36 -05:00
Tadgh e696262c4a Update snapshot-pipeline.yml for Azure Pipelines 
Add CI,ERRORPRONE profiles.
 2021-01-25 13:08:15 -05:00
Tadgh 5c0b3ea905 Add mutator for payload 2021-01-25 12:20:38 -05:00
Tadgh 4c9df3f7b4 Add string mimetype to resourceoperationemssage 2021-01-25 11:25:47 -05:00
Mark Iantorno 1e2f425810
Merge pull request #2322 from hapifhir/README-update 
Just cleaning up the README a little
 2021-01-25 10:30:37 -05:00
Tadgh c572575412 Remove mutator 2021-01-25 09:55:31 -05:00
Tadgh aa37884b2e Worked on #2317, force single consumer 2021-01-25 09:51:50 -05:00
Ken Stevens 86ea0d60ef
reduce _count to the maximum page size rather than throwing an error. (#2319) 
* reduce _count to the maximum page size rather than throwing an error.

Also when setting the paging provider on a restful server, automatically set the default page size and max page sized of the restful server from the paging provider.

* reword log message

* fixing this paging issue has uncovered all sorts of interesting things, including this long hidden bug!

* fix tests in sub-optimal way

* fix NPE

* fix test

* fixed a couple of bugs in SearchCoordinatorSvcImpl that surfaced when i added a default page size to RestfulServer
 2021-01-25 08:19:29 -05:00