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6861 Commits

Author SHA1 Message Date
jamesagnew 89f68353ee Add changelog 2020-08-13 05:47:56 -04:00
dependabot[bot] f3d5b69da0
Bump flyway-core from 6.4.1 to 6.5.4 (#2039) 
Bumps [flyway-core](https://github.com/flyway/flyway) from 6.4.1 to 6.5.4.
- [Release notes](https://github.com/flyway/flyway/releases)
- [Commits](https://github.com/flyway/flyway/compare/flyway-6.4.1...flyway-6.5.4)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2020-08-13 05:47:43 -04:00
jamesagnew d62e70c209 Add test 2020-08-13 05:45:49 -04:00
jamesagnew 92718c7ef2 Version bump to 5.2.0-SNAPSHOT 2020-08-12 10:23:46 -04:00
jamesagnew 5fb7bd5156 Version bump to 5.1.0 2020-08-11 17:43:24 -04:00
Ken Stevens aed97ad1cb
added EMPI change log (#2036) 2020-08-11 15:33:33 -04:00
jamesagnew 90ebaf8549 Add one more test for #2023 2020-08-11 08:54:03 -04:00
jamesagnew f3fbad63e7 Avoid a LOB error when expanding a valueset on Postgres 2020-08-11 08:30:48 -04:00
Jens Kristian Villadsen 39eea88b47
Update interceptors.md (#2033) 
Added the mention of public requirement!
 2020-08-11 05:25:36 -04:00
jamesagnew f0ed640e24 Upgrade core library dependency version 2020-08-10 09:05:04 -04:00
James Agnew e61b39fc30
Force a flush of the SearchParameter cache sooner when SPs change (#2030) 
* Force a flush of the SearchParameter cache sooner when SPs change

* Add changelog

* Test fixes
 2020-08-09 19:30:59 -04:00
jamesagnew 096f310cae Increase visibility 2020-08-09 14:23:06 -04:00
James Agnew 8f6d08dd58
Fix #2022 - Invalidate caches on expunge (#2029) 
* Fix #2022 - Invalidate caches on expunge

* Rename changelog file
 2020-08-09 14:14:28 -04:00
jamesagnew 49f4f3ef62 Add license headers 2020-08-09 13:23:45 -04:00
Jonathan Leitschuh 7f69352627
Use HTTPS instead of HTTP to resolve dependencies (#1708) 
This fixes a security vulnerability in this project where the `pom.xml`
files were configuring Maven to resolve dependencies over HTTP instead of
HTTPS.

Signed-off-by: Jonathan Leitschuh <Jonathan.Leitschuh@gmail.com>
 2020-08-09 13:04:16 -04:00
James Agnew 8e0023c385
Disable referential integrity for some paths (#2025) 
* Disable referential integrity for some paths

* Add changelog

* Remove unneeded file
 2020-08-09 07:09:37 -04:00
James Agnew 0de0b88aa0
Fix TestpageOverlay XSS Vulnerability (#2027) 
* Resolve XSS vulnerability

* Add changelog
 2020-08-09 07:06:11 -04:00
James Agnew 63ef2ce006
Fix #2012 - Always filter total from search results when consent interceptor in use (#2020) 
* consent bug test

* Fix #2012 - Always filter total from search results when consent
interceptor in use

* Add changelog

* Address coverage issues

Co-authored-by: Jens Kristian Villadsen <46567685+jvitrifork@users.noreply.github.com>
Co-authored-by: jvi <jvi@trifork.com>
 2020-08-07 09:16:02 -04:00
Tadgh 6cb39a14ea
Empi doc updates (#2021) 
* Update documentation about EMPI automatic linking

* Further documentation updates
 2020-08-06 16:45:04 -04:00
Tadgh 605c3d8f8a
Merge pull request #2019 from jamesagnew/minimum-data-required-for-empi 
Add a Minimum data requirement for EMPI processing
 2020-08-06 12:46:03 -07:00
Tadgh 5a720d45c3 Comment updates 2020-08-06 11:33:38 -07:00
Tadgh 1aa7d1c2d4 Remove dead comment 2020-08-06 11:32:41 -07:00
Tadgh c4fd055e52 propagate class rename 2020-08-06 11:32:06 -07:00
Tadgh d6ad434339 Rename class, add log 2020-08-06 11:02:20 -07:00
Tadgh ed618613a6 Add type-based filtering to filter service. Add tests 2020-08-06 10:58:37 -07:00
Tadgh c92a77c889 Introduce Filtering service 2020-08-05 21:48:06 -07:00
Tadgh 87d14f26fe Begin with a broken test 2020-08-05 16:20:41 -07:00
James Agnew 5d9d4070fb
Fix an issue with binary storage not updating correctly if a retry (#2014) 
interceptor is present
 2020-08-05 09:14:40 -04:00
Tadgh 750d693fc3
Merge pull request #1984 from jamesagnew/batch-empi-job 2020-08-04 13:21:25 -07:00
jamesagnew 03f7289ac8 Add test for #2012 2020-08-04 09:16:47 -04:00
Tadgh 3b9f9e6cc3 Rename operation 2020-08-03 21:35:12 -07:00
Tadgh b8a3a6e356 Update test 2020-08-01 17:35:04 -07:00
Tadgh da30772a01 Remove dead methods, constants, and add a javadoc 2020-08-01 13:19:52 -07:00
Tadgh 160155bd8f Update test to ensure start state is correct 2020-08-01 13:17:51 -07:00
Tadgh ac5d261a7f Doc updates and flip logic order in SearchParamSVc 2020-08-01 13:16:50 -07:00
Tadgh ad887428b3 Add removeAll function to DeleteConflictList 2020-08-01 13:15:22 -07:00
Tadgh 46251af81a Rename queue to channel 2020-08-01 13:12:32 -07:00
Tadgh 2cf48eb9b9 Move field length into constants 2020-08-01 13:11:33 -07:00
Tadgh c8dfd00864 Remove dead comments 2020-08-01 13:09:23 -07:00
Tadgh 3068fe8c1a Rework escape hatch to error 2020-08-01 13:08:29 -07:00
Tadgh 0d90bbcc9c Add escape hatch to while loop 2020-08-01 13:06:25 -07:00
Tadgh b0d301b245 Remove constructor argument that was unused 2020-08-01 13:04:22 -07:00
Tadgh 995c188305 implement function for all concrete classe 2020-08-01 13:03:37 -07:00
Tadgh 0a4d81eb85 Move getNextBatch into IResultIterator 2020-08-01 13:00:55 -07:00
Tadgh 1d6a26bf1d Remove unused method 2020-08-01 11:49:07 -07:00
Tadgh 0ef1665061 Merge branch 'batch-empi-job' of github.com:jamesagnew/hapi-fhir into batch-empi-job 2020-08-01 11:48:27 -07:00
Tadgh efaf09fbfa Fix java.lang.string in empiLink entity 2020-08-01 11:47:00 -07:00
Tadgh 8b378995b2 Doc updates 2020-08-01 11:45:47 -07:00
Tadgh 4c64cec8fa
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_operations.md 
Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-08-01 11:40:24 -07:00
Tadgh 9c5b69bb6e
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_operations.md 
Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-08-01 11:37:11 -07:00