756b0fdc7b
Fix transaction scoping ( #2799 )
...
* Work on transaction boundaries
* Test fixes
* Test fixes
* Test fix
* Resolve FIXME
* Test fix
* Test fix
* Test fix
* Test fixes
* Test fix
* Adjust changelog
* Remove unneeded changelog
* Test fix
* Test fixes
* Test fixes
* Test fixes
* Test fixes
* Test fix
* Fixes
* Test fix
2021-10-11 16:45:22 -04:00
aed718bd6f
Avoid redundant PID lookups in transaction processing ( #3061 )
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* Avoid redundant PID lookups in transaction processing
* Add changelog
* Test fix
2021-10-11 13:45:57 -04:00
a474e88ed4
issue-2397 implementing the mdm expansion on everything and searches ( #3044 )
...
* issue-2397 implementing the mdm expansion on everything and searches
* issue-2397 code cleanup and removal of test code
* issue-2397 some tests
* issue-2397 changelog added
* issue-2397 review fixes
* issue-2397 updated change log with example and fixed failing tests
* issue-2397 test fixing
* issue-2397 fixing test
* issue-2397 review fix
* issue 2397 fixing changelog file
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2021-10-07 10:46:23 -04:00
71e2b82128
Issue 2851 upload terminology valueset parallel versioning ( #3051 )
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* Fix operations for 'loinc-all' ValueSet
* Fix tests
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
2021-10-06 20:56:30 +00:00
59afbe086c
Allow canonical references to support treating given base URLs as local. ( #3050 )
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* Add failling test, works on #2843
* Partial hack to get this working
* Move implementation into pre-processing
* Add changelog
* Move implementation
* Minify Test
* Remove fixmes
* Tidying
* Ensure this only operates on STU versions which support canonical
2021-10-05 11:09:49 -04:00
2581cd1446
Bump postgres DB version
2021-10-04 10:54:33 -04:00
15748f4d54
Add setters
2021-10-04 07:41:24 -04:00
d320b78ae1
Improve synthea ingest performance ( #3033 )
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* Improve synthea ingest performance
* Tweaks
* Fix param splitting
* Update to test
* Add changelog
* Test fix
* Add some runtime checks
* Remove useless test
* Test fix
2021-10-04 05:46:06 -04:00
eca725afa4
Improve versioned URL support for ValueSet expansion ( #2994 )
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* Add test
* Test fixes
* Work on expansion errors
* Fixes
* Test fixes
* Test fixes
* Test fixes
* Test fixes
* Test fixes
* Test fixes
* Test fixes
* Work on fix
* Test fixes
* Test fixes
* Test fix
* Cleanup
* Test fixes
* Remove accidental commit
* Test fixes
* Version bump
* Add changelog
* Fixes
* Test fix
* Fix conflicts
2021-10-03 19:47:23 -04:00
cd1a4154c1
Merge branch 'remove-parallel-non-gets' of github.com:hapifhir/hapi-fhir into remove-parallel-non-gets
2021-09-28 09:55:13 -04:00
072c030c2d
Remove modifications, defaults work
2021-09-28 09:55:06 -04:00
ad05a5ec09
Merge branch 'master' into remove-parallel-non-gets
2021-09-28 09:43:01 -04:00
dde0529b07
Remove extra semicolon
2021-09-27 15:36:17 -04:00
0c123384c7
add test for failing batch bug, remove bounding on queue
2021-09-27 15:34:19 -04:00
d121f6eff1
Merge branch 'master' into 3020_Add_documentation_for_$partition-management-create-partition
2021-09-27 15:10:19 -04:00
2dec5f0821
Add explicit brackets
2021-09-27 13:47:23 -04:00
b4343a9823
Merge branch 'master' into issue-2851-upload-terminology-valueset-parallel-versioning
2021-09-27 09:48:15 -04:00
00ceb3f35d
Add tests
2021-09-27 09:47:05 -04:00
5ee5b08b50
Merge branch 'master' into mb-fix-NoFt-tests
2021-09-24 16:38:05 -04:00
b1dd40fdba
Try commenting out clearAllStaticFieldsForUnitTest to see what happens ( #3034 )
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* Try commenting out clearAllStaticFieldsForUnitTest to see what happens
* Rename clearAllStaticFieldsForUnitTest to randomizeLocaleAndTimezone and only do that
2021-09-24 16:01:28 -04:00
d03f9cb35b
Merge branch 'master' into issue-2851-upload-terminology-valueset-parallel-versioning
2021-09-24 15:40:22 -04:00
eb9f29b3f3
Simplify code
2021-09-24 15:05:06 -04:00
d067586607
[3020] add documentation/changelog
2021-09-24 14:49:07 -04:00
11c5f7ee87
Some configs don't publish and FullText service at all. Make it optional.
2021-09-24 14:32:34 -04:00
79e2800f3e
Fix cut-n-paste glitch in dstu2 NoFt
2021-09-24 13:48:01 -04:00
8c145d1212
Merge branch 'master' into 3020_Add_documentation_for_$partition-management-create-partition
2021-09-24 13:01:38 -04:00
6431ae4401
[3020] fix implementation/add tests
2021-09-24 13:00:05 -04:00
db55837c3c
Make our NoFt tests actually run without Ft.
...
Hibernate search was always configured with a lucene heap engine in all JPA tests.
Added a new config param - hapi_test.enable_lucene - to disable with config params on the NoFt tests.
2021-09-24 12:05:16 -04:00
4ab60e2f9b
Merge branch 'master' into issue-3017-remove-loincxml-file-from-application-used-as-fallback-when-loading-loinc-terminology
2021-09-24 08:59:15 -04:00
0db40c6118
support non-jpa batch
2021-09-24 00:39:15 -04:00
53c7476dae
hapi storage ( #3024 )
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* first pass moving core storage classes to storage-api
* move term service apis
* nearly done
* rename hapi-fhir-storage-api to hapi-fhir-storage and move transaction processor
* rename hapi-fhir-storage-api to hapi-fhir-storage and move transaction processor
* create new SearchConstants class to store platform independent search constants
* move a couple of subscription services
* move transaction processor adapter to storage
* version bump
* move searchparam
* fix test
* fix compile includes
* fix text
* fix docs
2021-09-23 22:04:46 -04:00
8bd14ae024
[3020] add $partition-management-lists-partitions
2021-09-23 16:08:56 -04:00
91d9101785
Merge branch 'master' into issue-3017-remove-loincxml-file-from-application-used-as-fallback-when-loading-loinc-terminology
2021-09-23 13:45:28 -04:00
d1e9c23c13
Remove loinc.xml file from application. Now it required as input for loinc upload.
2021-09-23 13:43:27 -04:00
9c8fd26692
Merge branch 'master' into issue-2851-upload-terminology-valueset-parallel-versioning
2021-09-23 11:56:44 -04:00
751c5d0d05
Implement revision suggestions. Add changelog.
2021-09-23 11:55:50 -04:00
ad9e0f1c9a
Merge branch 'master' into 3014-prevent-delete-expunge-cascade
2021-09-23 09:33:04 -04:00
2436f748aa
fix test
2021-09-22 14:38:53 -04:00
f9796b9e2a
fix test
2021-09-22 12:52:28 -04:00
26ac649946
changelog
2021-09-22 11:11:10 -04:00
9a18422173
fix review
2021-09-22 11:09:50 -04:00
48f73fa1d1
typo
2021-09-22 10:25:57 -04:00
c913707599
added header check
2021-09-22 10:15:22 -04:00
81a4f0c78f
Rename method for clarity. Increase test coverage.
2021-09-22 09:40:25 -04:00
fdf639d353
Merge branch 'master' into issue-2851-upload-terminology-valueset-parallel-versioning
2021-09-22 09:25:48 -04:00
ad5297b714
fix for issue #3014
2021-09-21 13:09:08 -07:00
060791aeb4
hapi-fhir-storage-api ( #3006 )
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* rename hapi-fhir-jpaserver-migrate to hapi-fhir-sql-migrate and move hapi-tasks into jpaserver-persistence
* rename hapi-fhir-jpaserver-api to hapi-fhir-storage-api
* move bulk import apis
* create hapi-fhir-jpa
* create hapi-fhir-jpa
* move CircularQueueCaptureQueriesListener to japi-fhir-jpa
* move mdm logs to storage-api
* move gziputil to storage-api
* move quartz scheduling to hapi-fhir-jpa
* move default subscription channel factory to storage-api
* consolidated batch constants
* correct accidental Logs change
* remove dependency of cdr-api on cdr-persistence
* fix javadoc
* pom descriptions
* review feedback
2021-09-21 15:36:08 +00:00
371484a4ea
Fix test to add now required id to loinc CodeSystem creation
2021-09-20 17:19:31 -04:00
3d5c863276
Revert creation of test utility class finally not needed
2021-09-20 17:18:45 -04:00
9c790a7374
Revert creation of test utility class finally not needed
2021-09-20 17:18:11 -04:00
James Agnew
TipzCM
jmarchionatto
Tadgh
Tadgh
katie_smilecdr
juan.marchionatto
michaelabuckley
Ken Stevens
Michael Buckley
Jimmy Deng
Justin Dar