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820 Commits

Author SHA1 Message Date
jamesagnew ef407d85bf Add logging 2021-01-12 08:56:12 -05:00
jamesagnew 128d384153 Credit for #2273 2021-01-07 06:03:31 -05:00
jamesagnew b79d154d81 Dependency version bumps 2021-01-06 10:21:25 -05:00
Tadgh efc6809ea6
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190) 
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)

* Fix spatial API changes, work on BaseTermReadSvcImpl

* Most of the way through the various filter property conversions

* Finished i think with BaseTermReadSvcImpl

* Compiling, but definitely broken

* Start test compilation failures

* All tests compiling (i think)

* remove suggest keywords operation

* Fix bootstrap errors, still have to deal with transient fields

* Rollback CR

* More refactoring, got IDs baked back into docs

* Fix coord util, fix a few more fields which require projection

* merge fixes

* begin refactor of valuesetexpansion tests

* fix another test

* Update tests

* remove todos, add TestContainers

* Fix descendant in

* Add testcontainers, fix another test

* fix more tests, replace embedded es

* Rip out embedded elastic, replace with TestContainer

* merge conflicts for new analyzers

* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs

* Remove dead deps, update testcontainer

* Remove java-hamcrest

* Pull asserts up, refactor tests to pass in RP tests

* Update V2 check

* Remove suggest keyword tests

* Split line for testing

* Fix perhaps one of the dumbest programming mistakes in my career so far

* Refactor tests which no longer rely on a strict known order

* Fix up test config, disable log test temporarily

* Remove log4j from being transitively pulled in. re-enable test

* Update log4j exclusions with new bridge. Update test to check for core class

* Move dependency to root pom in dep management section

* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment

* update testst, remove todos

* Add hibernate props provider method, add elastic regexp query

* Add todo for high level client builder

* Modify ElasticsearchRestClientFactory to support HTTPS hosts

* Remove protocol extraction from rest url

* do we even need to index this...?

* remove purge of non-indexed resources

* Add longer timeout to testcontainers

* Add task to add docker CLI to azure pipeline via task, for testcontainers

* WIP remove this

* Dont update version

* Add test for duplicate termconcepts

* Use real hibernate ORM methods

* merge issues

* Add partitionsettigns bean to match master

* Trying to debug testcontainers on azure...

* Trying to debug testcontainers on azure...

* Run even on previous failure

* Fix testcontainer port binds

* Add full text logs attaching, and test reporting

* I love yaml

* Remove comment

* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue

* Modify TX beheaviour

* wip

* Rework to use config and mocked beans for partition-aware lastN

* rework to not use beans and just inject vars i need for test, keps test envs cleaner

* update azure pipeline to only copy test results

* Remove erroneous publish

* Always get test logs

* Make it so indexing works,

* Add todos

* revert deleteByPid

* Work on test fixes

* Test fixes

* Test fixes

* Another test fix

* Test fix

* Work on tests

* Test fixes

* All tests passing locally

* Fix test failure

* FIx build error

* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider

* Update ngram of token filters

* Tidying

* subvert the purpose of hibernate elastic props builder to inject template

* dead space

* Rename changed class

Co-authored-by: jamesagnew <jamesagnew@gmail.com>
 2021-01-05 17:56:59 -05:00
dependabot[bot] 86f254cd66
Bump datasource-proxy from 1.5.1 to 1.7 (#2267) 
* Bump datasource-proxy from 1.5.1 to 1.7

Bumps [datasource-proxy](https://github.com/ttddyy/datasource-proxy) from 1.5.1 to 1.7.
- [Release notes](https://github.com/ttddyy/datasource-proxy/releases)
- [Changelog](https://github.com/ttddyy/datasource-proxy/blob/1.x/CHANGELOG.md)
- [Commits](https://github.com/ttddyy/datasource-proxy/compare/datasource-proxy-1.5.1...datasource-proxy-1.7)

Signed-off-by: dependabot[bot] <support@github.com>

* Add changelog

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
 2021-01-04 10:32:52 -05:00
dependabot[bot] aa584d5b2d
Bump maven-dependency-plugin from 3.0.2 to 3.1.2 (#2266) 
Bumps [maven-dependency-plugin](https://github.com/apache/maven-dependency-plugin) from 3.0.2 to 3.1.2.
- [Release notes](https://github.com/apache/maven-dependency-plugin/releases)
- [Commits](https://github.com/apache/maven-dependency-plugin/compare/maven-dependency-plugin-3.0.2...maven-dependency-plugin-3.1.2)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2021-01-04 06:49:12 -05:00
dependabot[bot] 0ac9ea643a
Bump plexus_compiler_api_version from 2.8.5 to 2.8.8 (#2243) 
Bumps `plexus_compiler_api_version` from 2.8.5 to 2.8.8.

Updates `plexus-compiler-api` from 2.8.5 to 2.8.8
- [Release notes](https://github.com/codehaus-plexus/plexus-compiler/releases)
- [Commits](https://github.com/codehaus-plexus/plexus-compiler/compare/plexus-compiler-2.8.5...plexus-compiler-2.8.8)

Updates `plexus-compiler-javac` from 2.8.5 to 2.8.8

Updates `plexus-compiler-javac-errorprone` from 2.8.5 to 2.8.8

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2021-01-04 06:18:36 -05:00
jamesagnew 8df8ed7838 Bump hibernate version 2021-01-03 16:56:02 -05:00
jamesagnew 57347ddb63 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2021-01-01 15:52:06 -05:00
jamesagnew ec712e086c Version bump mockito 2021-01-01 15:50:00 -05:00
jamesagnew ed4d7d7eb6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2021-01-01 15:07:37 -05:00
jamesagnew f30999b053 License header updates 2021-01-01 15:07:23 -05:00
jamesagnew 4373b47207 Library version bumps 2021-01-01 15:06:55 -05:00
Tadgh e79114e2ec
Un-revert the MDM changes, now that issues have been addressed (#2226) 
* Backward compatibility changes

* Revert "Revert "Remove all references to Person from EMPI.""

* Updated docs

* Removed mdm channel references

* Initial implementation

* fix coarseness bug. Fix tests. reinitialize silly bean

* Add forgotten json file

* Generic provider PoC

* Refactored provider to use BundleBuilder

* Removed version-specific MDM providers

* Addressed code review comments

* Fixed after merge

* Fixed docs

* MDM SVG for Update Use Cases

* Removed obsolete docs

Co-authored-by: Nick <nick.goupinets@smilecdr.com>
Co-authored-by: Nick Goupinets <73255752+nvg-smile@users.noreply.github.com>
 2020-12-17 10:12:53 -05:00
dependabot[bot] a689beffc5
Bump spring_version from 5.2.3.RELEASE to 5.2.9.RELEASE (#2085) 
Bumps `spring_version` from 5.2.3.RELEASE to 5.2.9.RELEASE.

Updates `spring-beans` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-context` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-context-support` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-core` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-jdbc` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-messaging` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-orm` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-test` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-tx` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-web` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-webmvc` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-websocket` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2020-12-14 14:29:34 -05:00
dependabot[bot] 092da2e93f
Bump slf4j_version from 1.7.28 to 1.7.30 (#2242) 
Bumps `slf4j_version` from 1.7.28 to 1.7.30.

Updates `slf4j-android` from 1.7.28 to 1.7.30

Updates `slf4j-api` from 1.7.28 to 1.7.30
- [Release notes](https://github.com/qos-ch/slf4j/releases)
- [Commits](https://github.com/qos-ch/slf4j/compare/v_1.7.28...v_1.7.30)

Updates `jcl-over-slf4j` from 1.7.28 to 1.7.30
- [Release notes](https://github.com/qos-ch/slf4j/releases)
- [Commits](https://github.com/qos-ch/slf4j/compare/v_1.7.28...v_1.7.30)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2020-12-14 10:49:19 -05:00
Kevin Dougan SmileCDR 9036df25fa
2229 - Remove support for the upload-igpack CLI command. (#2233) 
* 2229 - Remove support for the upload-igpack CLI command.

* 2229 - Revert changes made to the ValidateCommand class since it only takes an igpack as a parameter and therefore, should NOT have been removed.

* 2229 - Remove the igpack option from the Validate command.

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_3_0/2229-remove-upload-igpack-command.yaml

Co-authored-by: James Agnew <jamesagnew@gmail.com>

Co-authored-by: Kevin Dougan <kevindougan@kevins-mbp.lan>
Co-authored-by: James Agnew <jamesagnew@gmail.com>
 2020-12-14 09:50:16 -05:00
jamesagnew 0dc0e91766 Credit for #2241 2020-12-14 06:06:07 -05:00
Tadgh 0938d72b51
Revert "Remove all references to Person from EMPI." 2020-12-09 14:57:00 -05:00
Nick 4352e0a61f Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references 2020-12-03 11:28:21 -05:00
dependabot[bot] 1b263f1c32
Bump jetty_version from 9.4.34.v20201102 to 9.4.35.v20201120 (#2210) 
Bumps `jetty_version` from 9.4.34.v20201102 to 9.4.35.v20201120.

Updates `jetty-http` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120)

Updates `jetty-servlets` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120)

Updates `jetty-io` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120)

Updates `jetty-continuation` from 9.4.34.v20201102 to 9.4.35.v20201120

Updates `jetty-security` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120)

Updates `jetty-servlet` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120)

Updates `jetty-server` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120)

Updates `jetty-util` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120)

Updates `jetty-webapp` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120)

Updates `jetty-xml` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120)

Updates `websocket-api` from 9.4.34.v20201102 to 9.4.35.v20201120

Updates `websocket-client` from 9.4.34.v20201102 to 9.4.35.v20201120

Updates `websocket-server` from 9.4.34.v20201102 to 9.4.35.v20201120

Updates `jetty-maven-plugin` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2020-12-02 14:47:10 -05:00
Nick Goupinets d63c580e82 Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references 2020-12-01 13:18:42 -05:00
James Agnew 1e5def260c
Bump woodstox version (#2199) 2020-11-27 19:49:06 -05:00
Nick Goupinets 2a3b72db17 Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references 2020-11-27 16:54:04 -05:00
jamesagnew da75ff8da2 Credit for #2197 2020-11-26 10:08:56 -05:00
dependabot[bot] 27cff8153b
Bump jetty_version from 9.4.30.v20200611 to 9.4.34.v20201102 (#2176) 
Bumps `jetty_version` from 9.4.30.v20200611 to 9.4.34.v20201102.

Updates `jetty-http` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102)

Updates `jetty-servlets` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102)

Updates `jetty-io` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102)

Updates `jetty-continuation` from 9.4.30.v20200611 to 9.4.34.v20201102

Updates `jetty-security` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102)

Updates `jetty-servlet` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102)

Updates `jetty-server` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102)

Updates `jetty-util` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102)

Updates `jetty-webapp` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102)

Updates `jetty-xml` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102)

Updates `websocket-api` from 9.4.30.v20200611 to 9.4.34.v20201102

Updates `websocket-client` from 9.4.30.v20200611 to 9.4.34.v20201102

Updates `websocket-server` from 9.4.30.v20200611 to 9.4.34.v20201102

Updates `jetty-maven-plugin` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases)
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2020-11-19 20:20:01 -05:00
NG 4bbe4a3ef7 Merge branch 'gg_20201105-remove-person-references' of https://github.com/jamesagnew/hapi-fhir into gg_20201105-remove-person-references 2020-11-19 14:56:31 -05:00
NG 4378df7dcb Removed more EMPI refs from the docs 2020-11-19 14:56:18 -05:00
Tadgh 953b662827 Merge branch '2161-refactor-empi' into gg_20201105-remove-person-references 2020-11-19 14:24:51 -05:00
Tadgh 75c0c25d7b remove references to EMPI 2020-11-18 19:50:00 -05:00
jamesagnew 0c31741eec Version bump to 5.3.0-SNAPSHOT 2020-11-18 14:52:43 -05:00
jamesagnew 4d441ad7f2 Version bump to 5.2.0 2020-11-18 06:30:20 -05:00
James Agnew 228e75b501
Bump core to latest versions (#2154) 
* Bump core to latest versions

* Compile fix

* Bump to non snapshot core library
 2020-11-03 15:43:37 -05:00
jamesagnew 6ccb7c8312 Bump HTTPClient version 2020-10-28 10:28:04 -04:00
jamesagnew 783cbb3cf8 Bump postgres driver version 2020-10-26 19:34:50 -04:00
James Agnew 8000d2d0cf
SQL Join Rework (#2086) 
* switched to adding annotations.  Just did a test with Token, but the sql looks clean.

* switched to adding annotations.  Just did a test with Token, but the sql looks clean.

* added the other six index links

* trying different annotations

* Start testing

* Update resources on package install

* Add changelog

* Join rework

* CLean up SQL builder

* Add docs

* SP rework

* Join work

* Work on params

* Work on refactor

* Work on chains

* Work on joins

* Rework queries

* Work on queries

* Many more tests passing

* Refs test

* Work on sorting

* Work on tests

* More joins work

* Work on tests

* Work on queries

* Tests passing

* More test fixes

* Test fixes

* Work on SQL

* Tests passing

* Add some tests

* Add some tests

* License headers

* Use entity manager to get datasourcd

* One more fix

* Model cleanup

* Ongoing work

* Fixes

* Fixes

* Work on joins

* Ongoing fixes

* Merge conflict

* Cleanup

* clean up unused fields

* Work on join

* COmpile fix

* Rework querying

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/HibernateDialectProvider.java

Co-authored-by: Ken Stevens <khstevens@gmail.com>

* Address review comments

* Resolve fixmes

* Test fix

* Test fixes

* Test fix

Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-10-26 05:24:26 -04:00
jamesagnew 0fdff3e052 Credit for #2142 2020-10-23 10:33:49 -04:00
James Agnew aa3da9b05f
Bump bootstrap version (#2128) 
* Bump bootstrap version

* Add changelog

* Resolve fixme

* Rmove test code
 2020-10-12 20:47:14 -04:00
jamesagnew 7d150858dc Credit for #2118 2020-10-12 20:45:02 -04:00
jamesagnew bd6feec2f4 Initial credit for #2118 2020-10-12 17:19:15 -04:00
Josh Collins 844624b6dd
RDF Support in HAPI FHIR (#2118) 
* RDF Support in HAPI FHIR

* Ability to read/write FHIR resources as RDF (turtle serialization)
* Test suite to test roundtrip-ability of RDF parser

* Add null checks to appease LGTM

* Correct null check logic
 2020-10-12 17:16:00 -04:00
jamesagnew 576f6efc39 Credit for #1607 2020-10-09 11:58:00 -04:00
jamesagnew e8d844f4f3 Merge branch 'master' into gg_20201008_baddeps 2020-10-09 07:53:19 -04:00
James Agnew 2134d40f1c
Account for timezones in lastUpdated search (#2113) 
* Add test

* Fix

* Add changelog

* Test fixes

* Test fix

* Test fixes

* Resolve fixme

* Test fixes

* Remove debug logs

* Try to get CI tests passing again
 2020-10-09 07:52:46 -04:00
Tadgh 375552ac49 Update hibernate core and validator 2020-10-08 14:15:57 -04:00
Tadgh 5a29fd9945 rollback the elastic changes 2020-10-06 17:20:11 -04:00
dependabot[bot] 6ab7a0bcfe
Bump animal-sniffer-maven-plugin from 1.18 to 1.19 (#2084) 
Bumps [animal-sniffer-maven-plugin](https://github.com/mojohaus/animal-sniffer) from 1.18 to 1.19.
- [Release notes](https://github.com/mojohaus/animal-sniffer/releases)
- [Commits](https://github.com/mojohaus/animal-sniffer/compare/animal-sniffer-parent-1.18...animal-sniffer-parent-1.19)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2020-09-16 08:02:01 -04:00
jamesagnew ea5fba6dfb Remove maven site plugin 2020-09-15 05:40:19 -04:00
James Agnew 5b6ee4e475
Dependency version bump (#2074) 
* Dependency version bump

* More dependency work

* One more fix
 2020-09-14 08:42:28 -04:00
dependabot[bot] f3d5b69da0
Bump flyway-core from 6.4.1 to 6.5.4 (#2039) 
Bumps [flyway-core](https://github.com/flyway/flyway) from 6.4.1 to 6.5.4.
- [Release notes](https://github.com/flyway/flyway/releases)
- [Commits](https://github.com/flyway/flyway/compare/flyway-6.4.1...flyway-6.5.4)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2020-08-13 05:47:43 -04:00