markiantorno
770b773761
JPA conversion lib fixes
2021-08-20 11:08:14 -04:00
Tadgh
77c99e47c1
TIL that anyString() wont match nulls in Mockito, but any() will
2021-08-19 15:15:51 -04:00
markiantorno
367b338d85
Updating HAPI to use latest core lib changes.
2021-08-18 11:06:14 -04:00
Tadgh
cf917d0f82
Version Bump
2021-08-15 16:54:38 -04:00
Tadgh
669cf05b30
Modify SearchParameterMap toNormalizedQueryString to include value of _contained parameter
2021-08-12 14:25:12 -04:00
Tadgh
41ec1e03c0
Merge pull request #2880 from hapifhir/weird-contained-issue
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Contained Issue
2021-08-11 08:27:54 -04:00
Tadgh
e311835e8d
Revert test
2021-08-10 18:44:42 -04:00
Tadgh
a5c850b119
Pre-review cleaning
2021-08-10 17:37:24 -04:00
Tadgh
daa3bc773e
remove dummy test
2021-08-10 16:46:03 -04:00
Tadgh
fe98162616
Add changelog
2021-08-10 14:59:03 -04:00
Tadgh
71ed25b77c
Add commetn for juan
2021-08-10 14:58:47 -04:00
Tadgh
1cb6f490d6
Add dummy test. NOTE, remove before merge
2021-08-10 14:58:38 -04:00
Tadgh
2f42391ba8
wip
2021-08-10 14:58:30 -04:00
Tadgh
e402804049
Add test json files
2021-08-10 14:58:24 -04:00
Tadgh
8f200c1819
Add a failing test
2021-08-10 14:58:17 -04:00
Tadgh
35afa8bbfa
tidy
2021-08-10 14:57:51 -04:00
Tadgh
4c154951e2
Fully fleshed test, partial refactor
2021-08-10 14:56:57 -04:00
Tadgh
0a303a0e11
Add MDM expansion by golden pid
2021-08-06 13:22:08 -04:00
Michael Buckley
e8e49f3ffa
Pick d85a4e5ec24a27646b86487414e20ea4d36641f4 for release branch
2021-08-04 16:34:48 -04:00
juan.marchionatto
cb68c59fb5
Remove validation in code which will never reached for the conditions.
2021-08-03 15:39:02 -04:00
juan.marchionatto
45549d2bb9
Fix broken ITs.
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Add error message for non-snapshot upload with current version = false combination.
2021-08-03 14:11:14 -04:00
juan.marchionatto
1ff1954cba
Merge branch 'master' into issue-2786-upload-terminology-command-add-explicit-current-version-control
2021-07-30 11:20:23 -04:00
juan.marchionatto
4e8b1719f3
Add test for fixed use case
2021-07-30 10:48:10 -04:00
Ken Stevens
f5dfc3a5ed
New reindex spring batch operation ( #2845 )
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* first sweep to add new $reindex job
* first cut done. next up integration test.
* start roughing out reindex everything
* Failing test
* test passes
* add BundleUtil helper method
* rough in processEverything
* rough in processEverything
* fix mock test
* merge master
* Make BaseJpaTest.mySrd lenient.
* fix test
* reindex everything works with FIXMEs
* reindex everything more tests
* moar tests
* moar tests
* fix test
* fix test
* fix regression and fix test
* fix test cycle
* fixme
* fix test
* test provider layer
* reindex everything partition aware
* yay last fixme!
* run reindex in partitioned threads
* add fixmes for areas that require extra testing
* added transaction and log message
* manual integration testing
* changelog
* reindex all partitions
* bump hapi version
* fix test
* moar test
* pre-review cleanup
* fix javadoc
* review feedback
* review feedback
* review feedback
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2845-reindex-operation.yaml
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* review feedback
* review feedback
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/delete/job/ReindexJobTest.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/delete/job/ReindexJobTest.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/MultitenantBatchOperationR4Test.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/MultitenantBatchOperationR4Test.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/ResourceSearch.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-server/src/main/java/ca/uhn/fhir/rest/api/server/storage/IDeleteExpungeJobSubmitter.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
2021-07-29 19:18:49 -04:00
juan.marchionatto
264dfee099
Merge branch 'master' into issue-2786-upload-terminology-command-add-explicit-current-version-control
2021-07-29 16:21:56 -04:00
juan.marchionatto
1fcb36d84a
Fix implementation to work also for use case where version is being updated.
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Use property instead of parameter.
2021-07-29 15:54:00 -04:00
James Agnew
f957661dda
Patient ID Partition Mode should support conditional create ( #2828 )
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* Fixes
* Test fix
* Add changelog
* Test fixes
* Test fixes
* Docs tweak
* Partitioning fixes
* Import fix
* Fix test data
2021-07-26 14:18:58 -04:00
Ken Stevens
6bbb403fd1
When Client Id Strategy is set to NOT_ALLOWED, permit system requests to create resources ( #2827 )
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* resolved 2826
* fix regression
2021-07-23 19:10:19 -04:00
juan.marchionatto
ad6f7a204c
Fix changelog syntax. Merge current master.
2021-07-22 10:49:16 -04:00
jamesagnew
a5e6674e84
Version bump to 5.5.0-PRE7-SNAPSHOT
2021-07-22 08:41:16 -04:00
James Agnew
d78fef6732
Fix NPE in IdHelperService ( #2819 )
2021-07-22 08:34:28 -04:00
IanMMarshall
8b8db82666
Enable Package Loader when partitioning is enabled with unnamed partitions ( #2808 )
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* Enable Package Loader when partitioning is enabled with unnamed partitions.
* Enable Package Loader when partitioning is enabled with unnamed partitions.
* Additional package loading problems found with partitioning.
* Additional package loading problems found with partitioning.
Co-authored-by: ianmarshall <ian@simpatico.ai>
2021-07-22 05:17:17 -04:00
James Agnew
6d37749be8
Add non unique combo search params ( #2809 )
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* Start work on nonunique combo search params
* Work on SQL
* Version bump
* A fix
* Test fixes
* Fixes
* Undo version bump
* Test fixes
* Resolve fixme
2021-07-21 19:14:14 -04:00
James Agnew
6af022062f
Fix issue with partitioning in patient ID compartment mode ( #2810 )
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* Fix issue with partitioning in patient ID compartment mode
* Add changelog
2021-07-21 17:21:23 -04:00
juan.marchionatto
e0e52c666c
Add current-version parameter to upload-terminology command.
2021-07-21 16:18:35 -04:00
Michael Buckley
cbb9a4355a
Add details when we fail to load an element of a package definition.
2021-07-19 17:59:54 -04:00
Frank Tao
64f1643046
Added LOINC linguistic variants support ( #2803 )
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* Added linguistic variants for LOINC uploader
* Using static class
* Added the changelog
2021-07-19 14:17:56 -04:00
Frank Tao
946080d709
Added ConsumerName to the loinc loader. ( #2800 )
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* Added ConsumerName to the loinc loader.
* Added extra test for coverage
* Added the changelog for LOINC CONSUMER NAME support
2021-07-16 13:30:42 -04:00
James Agnew
0235296ba7
Add support for bulk export of multiple types ( #2797 )
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* Add support for bulk export of multiple types
* Add changelog
2021-07-15 14:01:10 -04:00
Nick Goupinets
ac31000377
Updated docs
2021-07-15 09:13:03 -04:00
Nick Goupinets
520cec1e15
Fixed link resolution
2021-07-14 11:30:09 -04:00
jamesagnew
6d4c2ef8f0
Expand access to SqlQuery
2021-07-08 16:16:27 -04:00
James Agnew
d762a07817
Partition patient interceptor ( #2766 )
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* Start work on interceptor
* Implemented
* Add interceptor and docs
* Add docs
* Compile fix
* Test fixes
* Test cleanup
* Test fixes
* Test fixes
* Improve error message
* Add broken tests
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2766-add-patient-id-compartment-interceptor.yaml
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/interceptor/PatientIdPartitionInterceptor.java
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Address review comments
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2021-07-05 09:15:20 -04:00
jamesagnew
6bb5cbf764
Cleanup logging
2021-07-04 15:31:10 -04:00
Tadgh
f66f9b992e
Bump pre-version as this will break downstream implementations
2021-06-30 15:37:19 -04:00
Tadgh
a770d577cb
Initial quick implementation of paging with tests
2021-06-29 17:46:03 -04:00
Ken Stevens
795fb31a3a
fixed mdm rules ( #2764 )
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* fixed mdm rules
* changelog
* review feedback jetbrains
* review feedback
2021-06-28 23:24:37 -04:00
Ken Stevens
5565bf9930
fixed an issue with matching compartments to lists of ids ( #2761 )
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* fixed an issue with matching compartments to lists of ids
* change log
2021-06-26 20:24:28 -04:00
Ken Stevens
ea98e62656
collapse multiple owners for same compartment into shared compartment ( #2760 )
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* collapse multiple owners for same compartment into shared compartment
* changelog
* fix regression
* fix regression
* pre-review cleanup
* pre-review cleanup
2021-06-26 11:48:47 -04:00
michaelabuckley
110173dafb
Merge pull request #2757 from hapifhir/2091-MemoryCacheService-confused-expiry
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Fix units on cache expiry
2021-06-25 14:29:43 -04:00
