Diederik Muylwyk
11ee6dedd3
Address CVE-2020-27223; bumped minor version of Jetty in root POM
2021-03-06 16:33:05 -05:00
James Agnew
b108e43600
Allow partition date for non-partitionable resources ( #2407 )
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* Allow partition date for searchparam resources
* Cleanup
* Test fix
* Documentation update
* Docs tweak
2021-02-22 20:49:09 -05:00
James Agnew
3eda19c65a
Version bump ( #2400 )
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* Version bump
* Docs changes
* Docs tweaks
* Docs tweak
* Spelling fixes
* Docs tweaks
2021-02-18 11:07:49 -05:00
jamesagnew
919c1dbddc
Version bump to 5.3.0
2021-02-17 07:10:13 -05:00
jamesagnew
028ef1b088
Credit for #2365
2021-02-08 09:15:04 -05:00
jamesagnew
da847ad08a
Credit for #2282
2021-02-07 12:32:41 -05:00
dependabot[bot]
703f7b2e65
Bump mariadb-java-client from 2.5.1 to 2.7.2 ( #2334 )
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Bumps [mariadb-java-client](https://github.com/mariadb-corporation/mariadb-connector-j ) from 2.5.1 to 2.7.2.
- [Release notes](https://github.com/mariadb-corporation/mariadb-connector-j/releases )
- [Changelog](https://github.com/mariadb-corporation/mariadb-connector-j/blob/master/CHANGELOG.md )
- [Commits](https://github.com/mariadb-corporation/mariadb-connector-j/compare/2.5.1...2.7.2 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-02-06 17:34:26 -05:00
Kevin Dougan SmileCDR
cfc5b87e3e
Removed an old comment from the root pom. ( #2359 )
2021-02-04 15:21:39 -05:00
JP
222bb7a8c0
Update to release versions of cql components ( #2357 )
2021-02-04 15:00:03 -05:00
James Agnew
e195bdc065
Try to avoid codecov fluctuations ( #2344 )
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* Try to avoid codecov fluctuations
* Less slowdown
* Another build tweak
* Build tweak
* Container bump
* Another build attempt
* One more test
2021-02-03 09:44:57 -05:00
jamesagnew
c0142a67b1
Credit for #2340
2021-02-02 14:27:42 -05:00
jamesagnew
d65ed820a5
Javadoc build fix
2021-02-01 12:13:47 -05:00
Kevin Dougan SmileCDR
2308d8f44b
Merge CQL Initial Implementation Into master ( #2330 )
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* CQL initial implementation
2021-01-29 16:35:38 -05:00
jamesagnew
589eb3158e
Credit for #2310
2021-01-29 11:02:51 -05:00
James Agnew
909d9f742c
Enable Auto-reference versions in JPA ( #2323 )
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* Automatic reference versions
* Auto reference versions
* resolve fixmes
* Add changelog
* Test fixes
* Test fixes
* Resolve fixmes
* Work on versioning
* Add support for _includes
* Update headers
* Change visibility
* One more tweak
* One more API tweak
* Fixes
* Account for review comments
* Fix errorprone reported issue
* Test fix
* Test fixes
* Test fixes
2021-01-27 14:49:10 -05:00
dependabot[bot]
feff734736
Bump jaxb-runtime from 2.3.1 to 3.0.0 ( #2289 )
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* Bump jaxb-runtime from 2.3.1 to 3.0.0
Bumps jaxb-runtime from 2.3.1 to 3.0.0.
Signed-off-by: dependabot[bot] <support@github.com>
* Bump jaxb-runtime from 2.3.1 to 3.0.0
Bumps jaxb-runtime from 2.3.1 to 3.0.0.
Signed-off-by: dependabot[bot] <support@github.com>
* Add jakarta bindings
* Dependency cleanup
* More depndency cleanup
* Work on deps
* Replace transaction annotation
* Cleanup
* Another fix
* Build fix
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-22 11:24:23 -05:00
Tadgh
7159d65902
bump databind version for CVE
2021-01-21 10:03:16 -05:00
James Agnew
14b0688f69
Bump core version to 5.2.16 ( #2308 )
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* Bump core library version
* Test fix
* Build fixes
* Some test fixes
* One more bit of docs
* Build fix
* Test fix
* Test fix
* Docs fix
2021-01-21 05:30:23 -05:00
Tadgh
fa17ea35cd
Minor version bump for CVE-2021-22132
2021-01-20 11:31:00 -05:00
dependabot[bot]
2db35f4dcb
Bump spring_version from 5.3.2 to 5.3.3 ( #2295 )
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Bumps `spring_version` from 5.3.2 to 5.3.3.
Updates `spring-beans` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-context` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-context-support` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-core` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-jdbc` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-messaging` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-orm` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-test` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-tx` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-web` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-webmvc` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-websocket` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Signed-off-by: dependabot[bot] <support@github.com>
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2021-01-17 17:43:11 -05:00
dependabot[bot]
391a6d1a3f
Bump ph-schematron from 5.2.0 to 5.6.5 ( #2184 )
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* Bump ph-schematron from 5.2.0 to 5.6.5
Bumps [ph-schematron](https://github.com/phax/ph-schematron ) from 5.2.0 to 5.6.5.
- [Release notes](https://github.com/phax/ph-schematron/releases )
- [Commits](https://github.com/phax/ph-schematron/compare/ph-schematron-parent-pom-5.2.0...ph-schematron-parent-pom-5.6.5 )
Signed-off-by: dependabot[bot] <support@github.com>
* Fix compile error
* Build fix
* Add test logging
* Test fix
* Resolve classpath duplicates
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-17 14:27:26 -05:00
dependabot[bot]
cc2a1c16c8
Bump commons-collections4 from 4.3 to 4.4 ( #2292 )
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Bumps commons-collections4 from 4.3 to 4.4.
Signed-off-by: dependabot[bot] <support@github.com>
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2021-01-17 13:27:48 -05:00
jamesagnew
9d8bbaf868
Add credit for #2054
2021-01-17 09:44:18 -05:00
dependabot[bot]
8a0b0885f2
Bump jersey_version from 2.25.1 to 3.0.0 ( #2245 )
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Bumps `jersey_version` from 2.25.1 to 3.0.0.
Updates `jersey-server` from 2.25.1 to 3.0.0
Updates `jersey-container-servlet-core` from 2.25.1 to 3.0.0
Updates `jersey-container-jetty-http` from 2.25.1 to 3.0.0
Updates `jersey-media-moxy` from 2.25.1 to 3.0.0
Signed-off-by: dependabot[bot] <support@github.com>
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2021-01-16 19:13:54 -05:00
dependabot[bot]
472eba040a
Bump jansi from 1.18 to 2.1.1 ( #2253 )
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Bumps [jansi](https://github.com/fusesource/jansi ) from 1.18 to 2.1.1.
- [Release notes](https://github.com/fusesource/jansi/releases )
- [Changelog](https://github.com/fusesource/jansi/blob/master/changelog.md )
- [Commits](https://github.com/fusesource/jansi/compare/jansi-project-1.18...jansi-2.1.1 )
Signed-off-by: dependabot[bot] <support@github.com>
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2021-01-16 19:05:31 -05:00
James Agnew
1dc4fb2206
Make quantity indexes use double datatype ( #2290 )
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* Make quantity indexes use double datatype
* Add changelog
* Test fixes
* Test fixes
* Disable test
2021-01-16 18:44:15 -05:00
dependabot[bot]
24ac055b50
Bump jackson_version from 2.11.2 to 2.12.1 ( #2287 )
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Bumps `jackson_version` from 2.11.2 to 2.12.1.
Updates `jackson-annotations` from 2.11.2 to 2.12.1
- [Release notes](https://github.com/FasterXML/jackson/releases )
- [Commits](https://github.com/FasterXML/jackson/commits )
Updates `jackson-core` from 2.11.2 to 2.12.1
- [Release notes](https://github.com/FasterXML/jackson-core/releases )
- [Commits](https://github.com/FasterXML/jackson-core/compare/jackson-core-2.11.2...jackson-core-2.12.1 )
Updates `jackson-datatype-jsr310` from 2.11.2 to 2.12.1
Updates `jackson-dataformat-yaml` from 2.11.2 to 2.12.1
- [Release notes](https://github.com/FasterXML/jackson-dataformats-text/releases )
- [Commits](https://github.com/FasterXML/jackson-dataformats-text/compare/jackson-dataformats-text-2.11.2...jackson-dataformats-text-2.12.1 )
Updates `jackson-module-jaxb-annotations` from 2.11.2 to 2.12.1
- [Release notes](https://github.com/FasterXML/jackson-modules-base/releases )
- [Commits](https://github.com/FasterXML/jackson-modules-base/compare/jackson-modules-base-2.11.2...jackson-modules-base-2.12.1 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-01-16 13:47:30 -05:00
jamesagnew
ef407d85bf
Add logging
2021-01-12 08:56:12 -05:00
jamesagnew
128d384153
Credit for #2273
2021-01-07 06:03:31 -05:00
jamesagnew
b79d154d81
Dependency version bumps
2021-01-06 10:21:25 -05:00
Tadgh
efc6809ea6
Replacing Hibernate Search 5 with Hibernate Search 6 ( #2190 )
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* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
dependabot[bot]
86f254cd66
Bump datasource-proxy from 1.5.1 to 1.7 ( #2267 )
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* Bump datasource-proxy from 1.5.1 to 1.7
Bumps [datasource-proxy](https://github.com/ttddyy/datasource-proxy ) from 1.5.1 to 1.7.
- [Release notes](https://github.com/ttddyy/datasource-proxy/releases )
- [Changelog](https://github.com/ttddyy/datasource-proxy/blob/1.x/CHANGELOG.md )
- [Commits](https://github.com/ttddyy/datasource-proxy/compare/datasource-proxy-1.5.1...datasource-proxy-1.7 )
Signed-off-by: dependabot[bot] <support@github.com>
* Add changelog
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-04 10:32:52 -05:00
dependabot[bot]
aa584d5b2d
Bump maven-dependency-plugin from 3.0.2 to 3.1.2 ( #2266 )
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Bumps [maven-dependency-plugin](https://github.com/apache/maven-dependency-plugin ) from 3.0.2 to 3.1.2.
- [Release notes](https://github.com/apache/maven-dependency-plugin/releases )
- [Commits](https://github.com/apache/maven-dependency-plugin/compare/maven-dependency-plugin-3.0.2...maven-dependency-plugin-3.1.2 )
Signed-off-by: dependabot[bot] <support@github.com>
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2021-01-04 06:49:12 -05:00
dependabot[bot]
0ac9ea643a
Bump plexus_compiler_api_version from 2.8.5 to 2.8.8 ( #2243 )
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Bumps `plexus_compiler_api_version` from 2.8.5 to 2.8.8.
Updates `plexus-compiler-api` from 2.8.5 to 2.8.8
- [Release notes](https://github.com/codehaus-plexus/plexus-compiler/releases )
- [Commits](https://github.com/codehaus-plexus/plexus-compiler/compare/plexus-compiler-2.8.5...plexus-compiler-2.8.8 )
Updates `plexus-compiler-javac` from 2.8.5 to 2.8.8
Updates `plexus-compiler-javac-errorprone` from 2.8.5 to 2.8.8
Signed-off-by: dependabot[bot] <support@github.com>
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2021-01-04 06:18:36 -05:00
jamesagnew
8df8ed7838
Bump hibernate version
2021-01-03 16:56:02 -05:00
jamesagnew
57347ddb63
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2021-01-01 15:52:06 -05:00
jamesagnew
ec712e086c
Version bump mockito
2021-01-01 15:50:00 -05:00
jamesagnew
ed4d7d7eb6
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2021-01-01 15:07:37 -05:00
jamesagnew
f30999b053
License header updates
2021-01-01 15:07:23 -05:00
jamesagnew
4373b47207
Library version bumps
2021-01-01 15:06:55 -05:00
Tadgh
e79114e2ec
Un-revert the MDM changes, now that issues have been addressed ( #2226 )
...
* Backward compatibility changes
* Revert "Revert "Remove all references to Person from EMPI.""
* Updated docs
* Removed mdm channel references
* Initial implementation
* fix coarseness bug. Fix tests. reinitialize silly bean
* Add forgotten json file
* Generic provider PoC
* Refactored provider to use BundleBuilder
* Removed version-specific MDM providers
* Addressed code review comments
* Fixed after merge
* Fixed docs
* MDM SVG for Update Use Cases
* Removed obsolete docs
Co-authored-by: Nick <nick.goupinets@smilecdr.com>
Co-authored-by: Nick Goupinets <73255752+nvg-smile@users.noreply.github.com>
2020-12-17 10:12:53 -05:00
dependabot[bot]
a689beffc5
Bump spring_version from 5.2.3.RELEASE to 5.2.9.RELEASE ( #2085 )
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Bumps `spring_version` from 5.2.3.RELEASE to 5.2.9.RELEASE.
Updates `spring-beans` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-context` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-context-support` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-core` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-jdbc` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-messaging` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-orm` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-test` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-tx` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-web` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-webmvc` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-websocket` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Signed-off-by: dependabot[bot] <support@github.com>
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2020-12-14 14:29:34 -05:00
dependabot[bot]
092da2e93f
Bump slf4j_version from 1.7.28 to 1.7.30 ( #2242 )
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Bumps `slf4j_version` from 1.7.28 to 1.7.30.
Updates `slf4j-android` from 1.7.28 to 1.7.30
Updates `slf4j-api` from 1.7.28 to 1.7.30
- [Release notes](https://github.com/qos-ch/slf4j/releases )
- [Commits](https://github.com/qos-ch/slf4j/compare/v_1.7.28...v_1.7.30 )
Updates `jcl-over-slf4j` from 1.7.28 to 1.7.30
- [Release notes](https://github.com/qos-ch/slf4j/releases )
- [Commits](https://github.com/qos-ch/slf4j/compare/v_1.7.28...v_1.7.30 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2020-12-14 10:49:19 -05:00
Kevin Dougan SmileCDR
9036df25fa
2229 - Remove support for the upload-igpack CLI command. ( #2233 )
...
* 2229 - Remove support for the upload-igpack CLI command.
* 2229 - Revert changes made to the ValidateCommand class since it only takes an igpack as a parameter and therefore, should NOT have been removed.
* 2229 - Remove the igpack option from the Validate command.
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_3_0/2229-remove-upload-igpack-command.yaml
Co-authored-by: James Agnew <jamesagnew@gmail.com>
Co-authored-by: Kevin Dougan <kevindougan@kevins-mbp.lan>
Co-authored-by: James Agnew <jamesagnew@gmail.com>
2020-12-14 09:50:16 -05:00
jamesagnew
0dc0e91766
Credit for #2241
2020-12-14 06:06:07 -05:00
Tadgh
0938d72b51
Revert "Remove all references to Person from EMPI."
2020-12-09 14:57:00 -05:00
Nick
4352e0a61f
Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references
2020-12-03 11:28:21 -05:00
dependabot[bot]
1b263f1c32
Bump jetty_version from 9.4.34.v20201102 to 9.4.35.v20201120 ( #2210 )
...
Bumps `jetty_version` from 9.4.34.v20201102 to 9.4.35.v20201120.
Updates `jetty-http` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Updates `jetty-servlets` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Updates `jetty-io` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Updates `jetty-continuation` from 9.4.34.v20201102 to 9.4.35.v20201120
Updates `jetty-security` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Updates `jetty-servlet` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Updates `jetty-server` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Updates `jetty-util` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Updates `jetty-webapp` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Updates `jetty-xml` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Updates `websocket-api` from 9.4.34.v20201102 to 9.4.35.v20201120
Updates `websocket-client` from 9.4.34.v20201102 to 9.4.35.v20201120
Updates `websocket-server` from 9.4.34.v20201102 to 9.4.35.v20201120
Updates `jetty-maven-plugin` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2020-12-02 14:47:10 -05:00
Nick Goupinets
d63c580e82
Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references
2020-12-01 13:18:42 -05:00
James Agnew
1e5def260c
Bump woodstox version ( #2199 )
2020-11-27 19:49:06 -05:00
Nick Goupinets
2a3b72db17
Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references
2020-11-27 16:54:04 -05:00
jamesagnew
da75ff8da2
Credit for #2197
2020-11-26 10:08:56 -05:00
dependabot[bot]
27cff8153b
Bump jetty_version from 9.4.30.v20200611 to 9.4.34.v20201102 ( #2176 )
...
Bumps `jetty_version` from 9.4.30.v20200611 to 9.4.34.v20201102.
Updates `jetty-http` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Updates `jetty-servlets` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Updates `jetty-io` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Updates `jetty-continuation` from 9.4.30.v20200611 to 9.4.34.v20201102
Updates `jetty-security` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Updates `jetty-servlet` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Updates `jetty-server` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Updates `jetty-util` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Updates `jetty-webapp` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Updates `jetty-xml` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Updates `websocket-api` from 9.4.30.v20200611 to 9.4.34.v20201102
Updates `websocket-client` from 9.4.30.v20200611 to 9.4.34.v20201102
Updates `websocket-server` from 9.4.30.v20200611 to 9.4.34.v20201102
Updates `jetty-maven-plugin` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2020-11-19 20:20:01 -05:00
NG
4bbe4a3ef7
Merge branch 'gg_20201105-remove-person-references' of https://github.com/jamesagnew/hapi-fhir into gg_20201105-remove-person-references
2020-11-19 14:56:31 -05:00
NG
4378df7dcb
Removed more EMPI refs from the docs
2020-11-19 14:56:18 -05:00
Tadgh
953b662827
Merge branch '2161-refactor-empi' into gg_20201105-remove-person-references
2020-11-19 14:24:51 -05:00
Tadgh
75c0c25d7b
remove references to EMPI
2020-11-18 19:50:00 -05:00
jamesagnew
0c31741eec
Version bump to 5.3.0-SNAPSHOT
2020-11-18 14:52:43 -05:00
jamesagnew
4d441ad7f2
Version bump to 5.2.0
2020-11-18 06:30:20 -05:00
James Agnew
228e75b501
Bump core to latest versions ( #2154 )
...
* Bump core to latest versions
* Compile fix
* Bump to non snapshot core library
2020-11-03 15:43:37 -05:00
jamesagnew
6ccb7c8312
Bump HTTPClient version
2020-10-28 10:28:04 -04:00
jamesagnew
783cbb3cf8
Bump postgres driver version
2020-10-26 19:34:50 -04:00
James Agnew
8000d2d0cf
SQL Join Rework ( #2086 )
...
* switched to adding annotations. Just did a test with Token, but the sql looks clean.
* switched to adding annotations. Just did a test with Token, but the sql looks clean.
* added the other six index links
* trying different annotations
* Start testing
* Update resources on package install
* Add changelog
* Join rework
* CLean up SQL builder
* Add docs
* SP rework
* Join work
* Work on params
* Work on refactor
* Work on chains
* Work on joins
* Rework queries
* Work on queries
* Many more tests passing
* Refs test
* Work on sorting
* Work on tests
* More joins work
* Work on tests
* Work on queries
* Tests passing
* More test fixes
* Test fixes
* Work on SQL
* Tests passing
* Add some tests
* Add some tests
* License headers
* Use entity manager to get datasourcd
* One more fix
* Model cleanup
* Ongoing work
* Fixes
* Fixes
* Work on joins
* Ongoing fixes
* Merge conflict
* Cleanup
* clean up unused fields
* Work on join
* COmpile fix
* Rework querying
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/HibernateDialectProvider.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Address review comments
* Resolve fixmes
* Test fix
* Test fixes
* Test fix
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-10-26 05:24:26 -04:00
jamesagnew
0fdff3e052
Credit for #2142
2020-10-23 10:33:49 -04:00
James Agnew
aa3da9b05f
Bump bootstrap version ( #2128 )
...
* Bump bootstrap version
* Add changelog
* Resolve fixme
* Rmove test code
2020-10-12 20:47:14 -04:00
jamesagnew
7d150858dc
Credit for #2118
2020-10-12 20:45:02 -04:00
jamesagnew
bd6feec2f4
Initial credit for #2118
2020-10-12 17:19:15 -04:00
Josh Collins
844624b6dd
RDF Support in HAPI FHIR ( #2118 )
...
* RDF Support in HAPI FHIR
* Ability to read/write FHIR resources as RDF (turtle serialization)
* Test suite to test roundtrip-ability of RDF parser
* Add null checks to appease LGTM
* Correct null check logic
2020-10-12 17:16:00 -04:00
jamesagnew
576f6efc39
Credit for #1607
2020-10-09 11:58:00 -04:00
jamesagnew
e8d844f4f3
Merge branch 'master' into gg_20201008_baddeps
2020-10-09 07:53:19 -04:00
James Agnew
2134d40f1c
Account for timezones in lastUpdated search ( #2113 )
...
* Add test
* Fix
* Add changelog
* Test fixes
* Test fix
* Test fixes
* Resolve fixme
* Test fixes
* Remove debug logs
* Try to get CI tests passing again
2020-10-09 07:52:46 -04:00
Tadgh
375552ac49
Update hibernate core and validator
2020-10-08 14:15:57 -04:00
Tadgh
5a29fd9945
rollback the elastic changes
2020-10-06 17:20:11 -04:00
dependabot[bot]
6ab7a0bcfe
Bump animal-sniffer-maven-plugin from 1.18 to 1.19 ( #2084 )
...
Bumps [animal-sniffer-maven-plugin](https://github.com/mojohaus/animal-sniffer ) from 1.18 to 1.19.
- [Release notes](https://github.com/mojohaus/animal-sniffer/releases )
- [Commits](https://github.com/mojohaus/animal-sniffer/compare/animal-sniffer-parent-1.18...animal-sniffer-parent-1.19 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2020-09-16 08:02:01 -04:00
jamesagnew
ea5fba6dfb
Remove maven site plugin
2020-09-15 05:40:19 -04:00
James Agnew
5b6ee4e475
Dependency version bump ( #2074 )
...
* Dependency version bump
* More dependency work
* One more fix
2020-09-14 08:42:28 -04:00
dependabot[bot]
f3d5b69da0
Bump flyway-core from 6.4.1 to 6.5.4 ( #2039 )
...
Bumps [flyway-core](https://github.com/flyway/flyway ) from 6.4.1 to 6.5.4.
- [Release notes](https://github.com/flyway/flyway/releases )
- [Commits](https://github.com/flyway/flyway/compare/flyway-6.4.1...flyway-6.5.4 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2020-08-13 05:47:43 -04:00
jamesagnew
92718c7ef2
Version bump to 5.2.0-SNAPSHOT
2020-08-12 10:23:46 -04:00
jamesagnew
5fb7bd5156
Version bump to 5.1.0
2020-08-11 17:43:24 -04:00
jamesagnew
f0ed640e24
Upgrade core library dependency version
2020-08-10 09:05:04 -04:00
jamesagnew
c13e17b4e6
Add changelog and bump Jetty
2020-07-17 11:50:45 -04:00
dependabot[bot]
dbe171d658
Bump jetty_version from 9.4.24.v20191120 to 9.4.29.v20200521 ( #1890 )
...
Bumps `jetty_version` from 9.4.24.v20191120 to 9.4.29.v20200521.
Updates `jetty-http` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Updates `jetty-servlets` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Updates `jetty-io` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Updates `jetty-continuation` from 9.4.24.v20191120 to 9.4.29.v20200521
Updates `jetty-security` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Updates `jetty-servlet` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Updates `jetty-server` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Updates `jetty-util` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Updates `jetty-webapp` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Updates `jetty-xml` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Updates `websocket-api` from 9.4.24.v20191120 to 9.4.29.v20200521
Updates `websocket-client` from 9.4.24.v20191120 to 9.4.29.v20200521
Updates `websocket-server` from 9.4.24.v20191120 to 9.4.29.v20200521
Updates `jetty-maven-plugin` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2020-07-17 11:47:06 -04:00
James Agnew
baba4cc240
Avoid version conflicts on current writes ( #1971 )
...
* Add auto retry of transactions
* Experiment in Maven build
* Transaction autoretry
* Work on transaction retries
* Work on transaction retry
* Work on transaction retry
* Fix tests
* Avoid version conflicts
* Add changelog
* Resolve LGTM issue
* FIx transaction scope error
* Test fixes
* Test fix
* Test fixes
* Test fix
* Test fixes
2020-07-13 08:51:13 -04:00
jamesagnew
11ad41d472
Credit for #1893
2020-07-06 05:52:40 -04:00
James Agnew
6fb6675b1e
Resolve validation errors to ValueSet with UCUM ( #1948 )
...
* Add tests for validation errors
* Work on validation errors
* Bump core version
* Fix validation errors
* Test fixes
* Add changelog
* Test fix
* Test fix
* Test fix
2020-07-05 19:59:21 -04:00
James Agnew
f356c7c385
Migrate to JUnit5 ( #1952 )
...
* Work on junit
* Work on junit 5
* Work on junit 5
* Bump errorprone vcersion
* Work on tests
* Junit 5 tweaks
* Fixes
* Work on tests
* Work on junit5
* Work on tests
* Test fixes
* Work on junit5
* Test work
* Get junit5 working
* Test fix
* Work on tests
* WOrk on tests
* Work on tests
* fixes
* Compile fix
* One more tweak
* Compile fix
* Add changelog
* Fix compile error
* Compile fix
2020-07-04 18:28:16 -04:00
Tadgh
59659b2802
Move order of modules
2020-06-24 10:11:30 -07:00
Tadgh
bb7a773f41
Merge branch 'master' into spring-batch-integration
2020-06-23 16:02:41 -07:00
James Agnew
67d363f9e1
Add setting to allow validation of reference targets ( #1932 )
...
* Add setting to allow validation of reference targets
* Add changelog
* Add changelog
* License headers
* Plugin version bump
* Experiment with Maven build
2020-06-23 11:35:10 -04:00
Tadgh
a9c704c06e
Merge branch 'master' into spring-batch-integration
2020-06-10 12:24:19 -07:00
James Agnew
b8da4f0140
Add package support ( #1911 )
...
* Begin rework of package management
* Work on NPM
* Work on package management
* Work on NPM
* NPM rework
* Work on NPM
* NPM package rework
* Updates
* Updates
* Add license
* Work on package server
* Work on package importing
* Work on package management
* Package rework
* Work on packages
* Work on package manager
* Work on pkgs
* NPM work
* NPM rework
* Work on package cache
* Work on NPM
* Work on NPM
* Package fixes
* Add tests
* Tweaks
* Test fixes
* Add changelog
* Avoid snapshot dep
2020-06-10 05:30:20 -04:00
James Agnew
0d3ad622b5
Correct Validation Performance Regression ( #1895 )
...
* Validation performance regression
* Optimize validation
* More cleanup
* Add changelog
* Test fixes
* Build fixes
2020-06-10 05:26:21 -04:00
Tadgh
278a1070ae
:Merge branch 'master' into spring-batch-integration
2020-06-08 17:16:11 -07:00
ianmarshall
f48214deda
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
2020-05-29 23:54:11 -04:00
Diederik Muylwyk
93a1229789
Removing redundant maven-enforcer-plugin execution.
2020-05-27 12:57:11 -04:00
Diederik Muylwyk
ed1e103751
Duplicate maven-enforcer-plugin removed, executions consolidated.
2020-05-27 12:39:17 -04:00
Tadgh
35b1533db1
Add new project for spring batch
2020-05-25 22:32:00 -07:00
ianmarshall
ee87a2e2d0
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
2020-05-25 11:37:34 -04:00
jamesagnew
6a4f5b9b3a
Credit for #1826
2020-05-24 09:32:44 -04:00
jamesagnew
c97ef7adfc
A bit more contributors cleanup
2020-05-23 19:45:00 -04:00
jamesagnew
3bf0628436
Updatyes to devs list
2020-05-23 19:17:33 -04:00
jamesagnew
d24f075cdb
Update some orgs
2020-05-23 17:22:59 -04:00
jamesagnew
b60404dbb8
Credit for #1849
2020-05-23 17:18:37 -04:00
jamesagnew
9192d41448
Credit for #1637
2020-05-23 17:16:19 -04:00
ianmarshall
4d378ee0ed
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-cli/hapi-fhir-cli-jpaserver/src/main/java/ca/uhn/fhir/jpa/demo/CommonConfig.java
# hapi-fhir-jpaserver-base/pom.xml
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/ISearchParamExtractor.java
2020-05-22 17:04:01 -04:00
Tadgh
d1b963321a
MVP EMPI implementation ( #1857 )
...
EMPI Initial Implementation (still plenty of known gaps)
2020-05-22 15:03:20 -04:00
jamesagnew
e22549e0c4
Bump MySQL JDBC driver version
2020-05-21 21:21:13 -04:00
jamesagnew
8ff7d5407a
Bump core version
2020-05-21 19:22:28 -04:00
Ken Stevens
2360ed4abe
fix build ( #1861 )
2020-05-21 19:22:08 -04:00
James Agnew
5b2181a563
Implement FHIR Patch ( #1850 )
...
* Start working on FHIRPatch
* More work on fhirpatch
* Work on FHIR Patch
* Add patch
* Test fixes
* Test fixes
* Get tests fixed
* Chnage to trigger a build
* Compile fix
* Dependency version fixes
* Test fix
* COmpile fix
* Try to fix build
* Test fix attempt
* Another build attempt
* Another build tweak
* Cleanup
2020-05-20 19:43:55 -04:00
jamesagnew
cc92bd7b07
Revert "Start working on FHIRPatch"
...
This reverts commit b3f6e7d521
.
2020-05-17 11:56:50 -04:00
jamesagnew
b3f6e7d521
Start working on FHIRPatch
2020-05-17 11:44:06 -04:00
jamesagnew
52c8e3551c
Version bump to 5.1.0-SNAPSHOT
2020-05-15 14:43:32 -04:00
jamesagnew
fe0e07a313
Bump to 5.0.1
2020-05-15 05:47:01 -04:00
ianmarshall
529e1e1f5e
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
2020-05-14 12:09:24 -04:00
jamesagnew
1d13e29ac0
Version bump to 5.1.0-SNAPSHOT
2020-05-12 20:04:20 -04:00
jamesagnew
d631ecff4a
Prepare for 5.0.0
2020-05-12 11:49:18 -04:00
jamesagnew
c7da4b0914
Build Cleanup
2020-05-11 13:25:58 -04:00
James Agnew
0c13a65871
Bump to latest Core version ( #1841 )
...
* Start working on bumping core
* Work on tests
* Work on tests
* Bump core definitions
* Bump R5 defs
* Tweak changelog
* Test fix
2020-05-11 12:37:16 -04:00
jamesagnew
386f395e4b
Version bump 2 dependencies
2020-05-10 19:10:18 -04:00
ianmarshall
4cced40b54
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
2020-05-05 17:19:32 -04:00
jamesagnew
ceae417d35
Credit for #1710
2020-05-04 05:42:32 -04:00
jamesagnew
586089fc69
Credit for #1749
2020-05-01 07:38:31 -04:00
jamesagnew
a786756169
Credit for #1812
2020-05-01 07:27:12 -04:00
jamesagnew
439a901e30
Credit for #1734
2020-05-01 05:56:47 -04:00
James Agnew
3d5a8bb3f8
Add UCUM support ( #1824 )
...
* Add UCUM support
* Add changelog
* Some cleanup
* Test fix
* Add flywayDB callback
* Add hooks to schema migrator
2020-04-30 15:22:41 -04:00
jamesagnew
885a18e0d8
Credit for #1788
2020-04-29 09:12:36 -04:00
ianmarshall
dd749791db
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
2020-04-24 16:55:45 -04:00
jamesagnew
6226381595
Merge branch 'master' into ja_20200206_multitenancy
2020-04-21 20:54:56 -04:00
jamesagnew
11fade2c2e
Bump boot version
2020-04-21 15:55:35 -04:00
jamesagnew
4b93a0d724
Credit for #1806
2020-04-21 15:49:43 -04:00
jamesagnew
1f848dde82
Credit for #1791
2020-04-21 15:30:42 -04:00
jamesagnew
faddeeb779
Add changelog
2020-04-20 11:15:35 -04:00
jamesagnew
95b77af570
Merge branch 'master' into ja_20200206_multitenancy
2020-04-20 11:07:10 -04:00
jamesagnew
bcac2b061c
Credit for #1799
2020-04-18 11:14:15 -04:00
jamesagnew
48057b9d8e
Merge branch 'master' into ja_20200206_multitenancy
2020-04-17 17:59:48 -04:00
ianmarshall
540375a7eb
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
2020-04-17 17:39:27 -04:00
jamesagnew
e0b419354f
Bump up hamcrest version and force the use of the latest version
2020-04-17 13:59:22 -04:00
jamesagnew
a1b3a97acf
Work on docs
2020-04-17 09:28:44 -04:00
ianmarshall
925bbbbcdc
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-cli/hapi-fhir-cli-api/src/main/java/ca/uhn/fhir/cli/RunServerCommand.java
# hapi-fhir-cli/hapi-fhir-cli-jpaserver/src/main/java/ca/uhn/fhir/jpa/demo/CommonConfig.java
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/dstu3/BaseDstu3Config.java
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/r4/BaseR4Config.java
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/r5/BaseR5Config.java
# pom.xml
2020-04-13 18:35:15 -04:00
jamesagnew
982b54df57
Work on multitenancy
2020-04-13 11:50:49 -04:00
jamesagnew
c26a5553e9
Multitenancy work
2020-04-12 20:47:32 -04:00
jamesagnew
e55ccf88fc
Work on multitenancy
2020-04-10 20:01:59 -04:00
jamesagnew
e0fcbe1df2
Merge branch 'master' into ja_20200206_multitenancy
2020-04-09 11:52:27 -04:00
jamesagnew
6baf1995c9
Work on subscription cleanup
2020-04-02 20:30:19 -04:00
ianmarshall
f891634341
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
2020-03-31 13:30:28 -04:00
jamesagnew
62d867902f
Work on multitenancy
2020-03-29 18:16:04 -04:00
jamesagnew
ec6fe70acb
Merge branch 'master' into ja_20200206_multitenancy
2020-03-27 05:50:08 -04:00
ianmarshall
4e4c8dbd9a
Initial commit of changes to support $lastn operation.
2020-03-25 18:02:13 -04:00
James Agnew
c6d23a8bc6
Add chain on _type parameter ( #1772 )
...
* Add chain on _type parameter
* Add changelog
* Test fix
* Address review comments
* Fix azure yaml
* Correct HTTPs in pom
* One more pom tweak
* Test fix
* Try azure again
2020-03-24 09:44:57 -04:00
jamesagnew
bb4cbb6af5
One more pom tweak
2020-03-24 06:10:29 -04:00
jamesagnew
22e0c7a596
Correct HTTPs in pom
2020-03-24 06:09:03 -04:00
jamesagnew
fa29f3e8ab
Credit for #1770
2020-03-23 19:12:05 -04:00
jamesagnew
14316147c5
Resolve some docs issues
2020-03-23 10:34:12 -04:00
James Agnew
22413911bf
Validation api changes ( #1719 )
...
* Validation enhancements
* Work on validation api reworking
* Keep working on validation API
* Keep working on new term API
* Work on validation api
* Ongoing work on validation
* Work on integrating validation
* Work on validation API
* Add to validation API
* Work on validation
* Work on API
* Work on validation
* Work on validation API
* Work on validation API
* Work on validation api
* Work on validation API
* Work on validation api
* Validation API changes
* Work on API
* More work on validationo API
* Work on validation API
* FIxes
* WOrk on validation api
* Work on validation API
* Tests passing!
* More cleanup
* More validation API changes
* Fix intermittent test failure
* Package reorg
* Validation API work
* Work on doocumentation
* Work on API
* More work on new validation API
* Fix errorprone-reported error
* Test fixes
* Documentation updates
* Documentation tweaks
* Work on API
* Bean name adjustments
* Build fixes
* Some test fixes
2020-03-17 13:28:59 -04:00
Jens Kristian Villadsen
80139f4800
Update pom.xml ( #1709 )
...
A run on master using https://jeremylong.github.io/DependencyCheck/dependency-check-maven/index.html shows quartz as having a critical security issue in version 2.3.1
2020-03-17 12:47:12 -04:00
James Agnew
4a160a2df3
Merge branch 'master' into ja_20200206_multitenancy
2020-03-03 09:25:19 -05:00
Gary Graham
ed7b9fc6b6
Initial attempt at integrating elastic APM for search performance
2020-02-28 16:09:16 -05:00
James Agnew
60f16dd91d
Update to 4.3.x core JAR ( #1715 )
...
* Added optionality for adding resource fetcher
* Added coverage that proves invocations
* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences
* Added optionality for adding resource fetcher
* Added coverage that proves invocations
* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences
* Start working on converter
* Account for compile errors
* Test fix
* Work no validator
* Work on getting core working
* Add some test coverage
* Many test fixes
Co-authored-by: Jens Kristian Villadsen <46567685+jvitrifork@users.noreply.github.com>
2020-02-17 14:28:29 -05:00
jamesagnew
ddc7b601ee
Version bump to 4.3.0-SNAPSHOT
2020-02-16 19:23:22 -05:00
jamesagnew
4fd80cfca7
Bump to 4.2.0
2020-02-16 19:00:15 -05:00
James Agnew
ebf395bee9
Merge branch 'master' into ja_20200206_multitenancy
2020-02-09 08:40:29 -05:00
jamesagnew
f7ec41ffc5
Work on multitenancy
2020-02-09 08:40:15 -05:00
James Agnew
c5c1e3196b
Resolve FIXMEs ( #1705 )
...
* Resolve FIXMEs
* Test fixes
* Test fixes
* Clean up unused code
* Add some test coverage
* Test fix
* Test fix
* Avoid intermittent
2020-02-09 08:39:46 -05:00
James Agnew
b2d2346228
Work on multitenancy
2020-02-07 15:18:06 -05:00
James Agnew
97289b3a1f
Credit for #1692
2020-02-04 17:38:42 -05:00
jamesagnew
3c965183e7
Checkstyle plugin version bump
2020-02-03 19:45:32 -05:00
dependabot[bot]
b5adef43ac
Bump checkstyle from 8.18 to 8.29
...
Bumps [checkstyle](https://github.com/checkstyle/checkstyle ) from 8.18 to 8.29.
- [Release notes](https://github.com/checkstyle/checkstyle/releases )
- [Commits](https://github.com/checkstyle/checkstyle/compare/checkstyle-8.18...checkstyle-8.29 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-02-02 20:36:15 -05:00
jamesagnew
beab5b3a9c
Credit for #1689
2020-01-29 05:56:36 -05:00
James Agnew
39ff698dd2
Parser performance tweaks ( #1660 )
...
* Parser improvements
* Parser tweaks
* Fix test
* Add changelog
* Bump spring mvc version
* Bump spring version
* Test fix?
2020-01-22 14:44:12 -05:00
James Agnew
1390ea3c06
Update FHIR R5 structures to 4.2.0 version ( #1665 )
...
* Work on upgrading core
* Work on R5 updates
* Work on core updates
* Test fix
* Update model version properties file for R5
* Bump core version
* Test fixes
* Add 4.2.0-SNAPSHOT version to versions page in docs
2020-01-14 10:27:01 +08:00
jamesagnew
f963906545
Bump postgres version
2019-12-27 09:57:40 -05:00
James Agnew
5cfc75eac2
Test fixes
2019-12-25 13:05:33 -05:00
James Agnew
0a21ab6941
Use datasource for migrator
2019-12-18 14:23:46 -05:00
James Agnew
c0c85d7c8c
Logging fixes
2019-12-16 10:30:04 -05:00
jamesagnew
f2221bcc69
Restore errorprone to the build
2019-12-15 19:11:27 -05:00
James Agnew
e1f2d044ed
Add errorprone back into build
2019-12-15 09:42:51 -05:00
jamesagnew
ba8f50f0c8
Docs updates
2019-12-14 18:19:09 -05:00
Ken Stevens
0b30033b0a
upgrade flyway to latest version
...
automatically repair failed migrations
2019-12-09 11:19:18 -05:00
dependabot[bot]
fadaad9e96
Bump jetty_version from 9.4.23.v20191118 to 9.4.24.v20191120
...
Bumps `jetty_version` from 9.4.23.v20191118 to 9.4.24.v20191120.
Updates `jetty-http` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `jetty-servlets` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `jetty-io` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `jetty-continuation` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `jetty-security` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `jetty-servlet` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `jetty-server` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `jetty-util` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `jetty-webapp` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `jetty-xml` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `websocket-api` from 9.4.23.v20191118 to 9.4.24.v20191120
Updates `websocket-client` from 9.4.23.v20191118 to 9.4.24.v20191120
Updates `websocket-server` from 9.4.23.v20191118 to 9.4.24.v20191120
Updates `jetty-maven-plugin` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Signed-off-by: dependabot[bot] <support@github.com>
2019-12-02 23:16:19 +00:00
Jafer Khan
2115721940
Corrected typos and fixed grammatical mistakes in documentation
2019-12-01 03:35:35 +05:00
Ken Stevens
a32c62f83b
Merge remote-tracking branch 'remotes/origin/master' into ks-flyway
...
# Conflicts:
# src/changes/changes.xml
2019-11-24 16:42:23 -05:00
James Agnew
dc9650e32c
Bump greenmail dep
2019-11-23 20:52:21 +01:00
James Agnew
51b608188b
Some CI surefire improvements ( #1602 )
...
* Some CI surefire improvements
* Build tweak
* More tweak
* Update azure-pipelines.yml for Azure Pipelines
* Update azure-pipelines.yml for Azure Pipelines
* One more CI attempt
* Update azure-pipelines.yml for Azure Pipelines
* Tweak command line
* Another build test fixc
* More build cleanup
2019-11-23 19:51:02 +01:00
James Agnew
a2f77b23d2
Fix #1583 - Index local refs in canonical types ( #1593 )
...
* Fix #1583 - Index local refs in canonical types
* Add fix to pre-expansion
* Test fix
* Rework ID handling
* Test fixes
* Fix test
2019-11-23 16:32:37 +01:00
Ken Stevens
6543da1470
Merge remote-tracking branch 'remotes/origin/master' into ks-flyway
2019-11-15 09:28:30 -05:00
James Agnew
497a96ae68
Version bump for next round of development
2019-11-12 22:09:21 -05:00
jamesagnew
f99ad981b5
Version bump to 4.1.0
2019-11-12 16:08:20 -05:00
James Agnew
aa0301084b
Don't succeed validation on unknown codesystem ( #1575 )
...
* Don't succeed validation on unknown codesystem
* Test fixes
* Work on error messages
* Work on code validation API
* work on tests
* Work on validation
* Test fix
* Update DSTU3 validation reources
* Upgrade structures
* Test fixes
2019-11-12 14:35:49 -05:00
Ken Stevens
7525e70bbc
added message type to channel api. needed by kafka listeners when more than one message type needs to be supported
2019-11-09 18:31:08 -05:00
Jens Kristian Villadsen
37cc5a4a72
Update pom.xml
...
Bump version of awaitility (https://github.com/awaitility/awaitility/pull/138 ) due to issues on Windows
2019-11-05 05:29:06 -05:00
Ken Stevens
1c4b73b86a
pre-review cleanup
2019-11-04 08:27:34 -05:00
Ken Stevens
4c732ce977
Merge remote-tracking branch 'remotes/origin/master' into ks-flyway
2019-11-03 21:07:59 -05:00
Ken Stevens
6ff1aaae61
Merge remote-tracking branch 'remotes/origin/master' into ks-flyway
2019-11-03 13:46:51 -05:00
James Agnew
60628356a8
Version bump spring
2019-11-03 11:29:22 -05:00
James Agnew
ac51098cb3
Version bump H2
2019-11-02 23:48:14 -04:00
Ken Stevens
bb0f71f271
Merge remote-tracking branch 'remotes/origin/master' into ks-flyway
2019-11-02 21:51:47 -04:00
James Agnew
3b6709e1d1
Merge pull request #1566 from jamesagnew/ja_20190928_rationalize_search_param_extractor
...
Rationalize search param extractors across FHIR versions
2019-11-02 16:18:23 -04:00
Ken Stevens
bee993a0ec
Merge remote-tracking branch 'remotes/origin/master' into ks-flyway
...
# Conflicts:
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/taskdef/DropIndexTask.java
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/taskdef/DropTableTask.java
2019-11-01 13:37:00 -04:00
Stig Rohde Døssing
80bfb9af37
Issue-1077: Make CapabilityStatementProvider use the closest common superclass of provided resources when generating rest.resource.profile, instead of always using the base definition.
2019-11-01 10:20:16 -04:00
James Agnew
e29462bcab
Version bump some dependencies
2019-11-01 10:15:27 -04:00
Ken Stevens
9c9193b401
Merge remote-tracking branch 'remotes/origin/master' into ks-flyway
2019-10-31 09:38:30 -04:00
James Agnew
97d5edc0b0
Credit for #1538
2019-10-31 08:21:11 -04:00
James Agnew
817f9ae36e
Merge branch 'master' into ja_20190928_rationalize_search_param_extractor
2019-10-27 17:25:20 -04:00
Ken Stevens
18e8604494
Merge remote-tracking branch 'remotes/origin/master' into ks-flyway
...
# Conflicts:
# hapi-fhir-cli/hapi-fhir-cli-api/pom.xml
2019-10-27 08:29:52 -04:00
James Agnew
464c6c5b45
Upgrade dependencies and addess Semmle issues ( #1554 )
...
* Version bumps
* FIx build issues
* Address a few Semmle issues
* Work on tests
* Some test fixes
* Test fix
* Fix deletions
* Test fix
* Fix intermittent test failure
* One more dependency bump
* Add some test logging
* Remove bad import
* Add some tests
* Test updates
2019-10-22 17:10:58 -04:00
James Agnew
a375f761cb
FIx typo in pom
2019-10-22 14:17:25 -04:00
James Agnew
5809457335
Credit for #1526
2019-10-22 14:01:21 -04:00
jelmer.terwal
c003047ca9
Split test from example
2019-10-22 13:58:52 -04:00
James Agnew
0af79b84d9
Use webjars instead of including JS deps ( #1551 )
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* Use webjars instead of including JS deps
* Add changelog
2019-10-21 07:22:55 -04:00
James Agnew
e6ae368424
Credit for #1547
2019-10-18 07:07:02 -04:00
James Agnew
2725797610
Implement Terminology Delta Operations ( #1536 )
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* Start refactoring terminology delta operations
* Work on delta operations
* Work on concept saving
* Split term services into smaller services
* Work on term delta operations
* Work on term svcs
* Work on term operations
* More work on delta uploader
* Add a test
* Wrk on term service
* Fix compile error
* Some refactoring
* Test fix
* Test fix
* Test fixes
* Test fix
* Test fixes
* Test fixes
* Work on delta
* Work on tests#
* Test fixes
* Improve resequencing logic
* Build test
* More testing
* More build testing
* More work on tests
* CHange test logging
* Fix term service PID issue
* Update src/changes/changes.xml
Co-Authored-By: Diederik Muylwyk <diederik.muylwyk@gmail.com>
* Address review comment
* Some cleanup
* Test fix
* Fix some tests
* Test fixes
2019-10-14 19:14:41 -04:00
Ken Stevens
790f655a95
flyway initial implementation (with FIXMEs)
2019-10-06 17:55:10 -04:00
jamesagnew
55491fd1bf
Add a couple of exclusions
2019-10-03 07:21:53 -04:00
James Agnew
da9efaea0b
Credit for https://github.com/hapifhir/hapi-fhir-jpaserver-starter/pull/54
2019-10-01 15:22:03 -04:00
jamesagnew
48d191cbe5
Credit for #1473
2019-10-01 05:32:54 -04:00
James Agnew
557a8ccc66
Add top level support for ElasticSearch ( #1514 )
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* ElasticSearch work
* Add ElasticSearch properties builder
* Clean up POM
* Remove redundant project
* Try to troubleshoot embedded elasticsearch
* Another test attempt
* Add credentials to elasticsearch config
* Work on lastn
* Address review comments
* A couple of test fixes
2019-09-30 09:30:39 -04:00
jamesagnew
b2c13f3018
Work on codecov integration
2019-09-25 13:25:59 -04:00
James Agnew
5f563057c0
Set up CI with Azure Pipelines ( #1502 )
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* Set up CI with Azure Pipelines
[skip ci]
* Update azure-pipelines.yml for Azure Pipelines
* Skip tests for a build
* Work on pipeline
* Update azure-pipelines.yml for Azure Pipelines
* Interceptors docs
* Test fix
* Disable releases from snapshot repo
* Try disabling jitpack
* Fix dependency issue
* A couple of test fixes
* Change to trigger a build
* Force a change to trigger a build
* Force a build
* FIx test
2019-09-24 14:38:38 -04:00
jamesagnew
936587df6e
Work on migrating docs
2019-09-22 15:52:49 -04:00
James Agnew
58b7e3a923
Start splitting docs into separate project
2019-09-22 08:58:17 -04:00
James Agnew
ad01d7598c
Credit for #1489
2019-09-19 20:41:02 -04:00
jamesagnew
170698562a
Bump to current org.hl7.fhir.core
2019-09-19 08:11:30 -04:00
James Agnew
4a751cbfc5
Integrate Bulk Export ( #1487 )
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* Start working on subscription processor
* Work on new scheduler
* Test fixes
* Scheduler refactoring
* Fix test failure
* One more test fix
* Updates to scheduler
* More scheduler work
* Tests now all passing
* Ongoing work on export
* Ongoing scheduler work
* Ongoing testing
* Work on export task
* Sync master
* Ongoing work
* Bump xml patch version
* Work on provider
* Work on bulk
* Work on export scheduler
* More test fies
* More test fixes
* Compile fix
* Reduce logging
* Improve logging
* Reuse bulk export jobs
* Export provider
* Improve logging in bulk export
* Work on bulk export service
* One more bugfix
* Ongoing work on Bulk Data
* Add changelog
2019-09-17 16:01:35 -04:00
James Agnew
0831feb2c3
Bump xml patch version
2019-09-11 17:33:31 -04:00
jamesagnew
c7ec9601fd
Bump core version
2019-09-10 13:32:59 -04:00
James Agnew
722c7a8211
Work on GraphQL updates
2019-09-06 14:56:17 -04:00
James Agnew
8ce8f1e864
Credit for #1461
2019-09-01 18:41:17 -04:00
Ken Stevens
37c1ba44fe
Merge remote-tracking branch 'remotes/origin/master' into ks-awaitility-version-bump
2019-08-21 15:04:16 -04:00
James Agnew
9428430822
Add support for Resource.meta.source ( #1438 )
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* Work on indexing source
* Work on tests
* Refactor query count tests
* Unit test fixes
* Add some tests
* DAO fix
* Fix compile error
* Unit test fix
* Cleanup
* Test fix
* Fix compile error
* One more test fix
2019-08-21 11:17:43 -04:00
Ken Stevens
daf45db2be
fixed a test and removed awaitility excludes
...
mvn install completed successfully
2019-08-20 09:14:21 -04:00
Ken Stevens
630bb916b4
awaitility version bump
2019-08-19 12:15:14 -04:00
James Agnew
a0cb7beb28
Bump core projects version
2019-08-19 08:15:04 -04:00
James Agnew
4490c9ca09
Correct the eq operator on the _filter parameter
2019-08-14 14:39:40 -04:00
jamesagnew
e1b43d811f
Version bump to 4.1.0-SNAPSHOT
2019-08-14 14:06:06 -04:00
jamesagnew
3f22456b0f
Bump version to 4.0.0
2019-08-14 11:06:26 -04:00
jamesagnew
a1e1cf4e56
Credit for #1375
2019-08-13 05:37:40 -04:00
James Agnew
31e374ded8
Credit for #1220
2019-08-12 13:35:27 -04:00
James Agnew
301a8f8432
Merge #1146 - Filter implementation ( #1220 )
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* Initial commit of _filter keyword implementation.
* - Completed all search parameter types for _filter.
- Implemented handling for _has, _id, _security, language, _profile, _security, and _tag.
* - Changes to support "ne" matching on resource ID for _filter
* Implemented language
* Commit/push before creation of pull request
* Ongoing merge work
* Ongoing merge work
* Merge master in
* Test fix
2019-08-12 11:59:33 -04:00
jamesagnew
4e1bbe681a
Bump supported PGSQL driver
2019-08-08 15:12:29 -04:00
James Agnew
dd0cb10dbb
validate operation ignores parameter profile ( #1417 )
...
* This should be working now - need to check tests
* Add a changelog and some docs
* One more test fix
* Tests should be passing
* Fix compile
* Test fixes
* Ignore outdated DSTU2 validation test
2019-08-07 15:31:59 -04:00
jamesagnew
d9247a2021
Account for GPG 1.2
2019-08-07 10:43:30 -04:00
James Agnew
60eab3ad70
Add support for R5 resources ( #1416 )
...
* Work so far on R5 support
* Add support for R5
* Docs changes
2019-08-06 17:30:31 -04:00
jamesagnew
46c8c61932
Restore build - May need to roll back the RDF changes
2019-08-01 10:14:56 -04:00
jamesagnew
39c2a95ce7
Credit for #1321
2019-08-01 09:29:43 -04:00
James Agnew
0f4738c1b5
Merge branch 'master' into rdf_parser
2019-08-01 09:25:40 -04:00
jamesagnew
e20443010d
Credit for #1404
2019-08-01 06:38:37 -04:00
James Agnew
7831e8a0ed
Add support for $snapshot generation and validation based on snapshots
2019-07-14 16:15:56 -04:00
James Agnew
120b93f204
Use HL7 FHIR Core Structures ( #1382 )
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* Ongoing work on core structures suport
* Ongoing work on this merge
* Ongoing work to clean up structures
* Credit for #1179
* Address compile issues
* Latest changes
* Work on parallel execution
* Work on getting tests passing
* Add H2 to migrator
* Test fix
2019-07-14 10:16:40 -04:00
James Agnew
75f0dc993c
Try to prevent an intermittent test fix
2019-07-11 21:39:41 -04:00