honeymoose
/
hapi-fhir
mirror of https://github.com/hapifhir/hapi-fhir.git
1
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity
7,074 Commits 639 Branches 125 Tags 1.2 GiB
Commit Graph

2913 Commits

Author SHA1 Message Date
Frank Tao 972bdbd87d Updated based on code review 2020-09-10 21:17:41 -04:00
Frank Tao c873b6d6dd Fixed ConceptMap $translation without conceptMapVersion issue. 2020-09-09 22:24:02 -04:00
ianmarshall b4a87adc64 Suggested test that includes case where ConceptVersion is not specified in $translate operation. 2020-09-09 16:53:14 -04:00
Frank Tao 2fd692f5bb Updated R5 reverse $translate test case for more coverage 2020-09-07 20:54:35 -04:00
Frank Tao 5e17625a1b Fixed NullPointerException for reverse $translate operation. 2020-09-07 18:09:01 -04:00
Frank Tao 5410042643 Multi-version supported for ConceptMap $translate operation 2020-09-07 10:43:58 -04:00
Frank Tao 81cd73f820 Added test cases to for duplicate url and version of ConceptMap 2020-09-06 15:27:29 -04:00
Frank Tao 1ecec0abc9 Fixed duplicate ConceptMap URL only 2020-09-06 15:23:26 -04:00
Frank Tao 45b88de3b6 Fixed typo 2020-09-06 11:47:07 -04:00
Frank Tao ed2801dbaf ConceptMap multi-version supported 2020-09-06 11:33:55 -04:00
ianmarshall 5b707f97a9 Missing commits 2020-09-04 09:25:35 -04:00
ianmarshall 019d08a064 Merge remote-tracking branch 'remotes/origin/master' into im_20200728_term_multi_version_support 2020-09-03 22:37:39 -04:00
ianmarshall 5f005120c9 Initial changes to support multi-version ValueSets 2020-09-03 22:36:15 -04:00
jamesagnew 5b7e6b593b Avoid startup retry loop 2020-09-02 19:56:57 -04:00
James Agnew d8542899e5
Don't lazy load DAOs (#2061) 
* Don't lazy load DAOs

* More tweaks
 2020-09-01 09:54:50 -04:00
James Agnew c6777578a8
Avoid DB binary storage deadlock (#2062) 
* Avoid DB binary storage deadlock

* Add changelog

* Rework
 2020-09-01 09:52:38 -04:00
ianmarshall 94440c849f Ensure that LOINC loader assigns a distinct ID for each version. 2020-08-30 21:53:38 -04:00
ianmarshall 1c55d87b10 Problem found in LOINC loader. 2020-08-30 17:11:48 -04:00
ianmarshall 3fef8f7bef Back out changes relating to validate operations. Cleanup of code 2020-08-30 15:29:57 -04:00
ianmarshall 92313cd770 Tests and fixes to support versioned CodeSystem lookup and subsume operations 2020-08-26 16:23:17 -04:00
ianmarshall 5a0bce9155 Changes to enable request delete of specific Code System version. 2020-08-25 12:45:53 -04:00
ianmarshall 796d2923e0 Merge remote-tracking branch 'remotes/origin/master' into im_20200728_term_multi_version_support 2020-08-25 12:07:13 -04:00
ianmarshall 749c2bc4be Changes to enable request delete of specific Code System version. 2020-08-25 12:06:07 -04:00
James Agnew 437e81fc65
Support multiple updates of one resource in a transaction (#2050) 
* Support multiple updates of one resource in a transaction

* Test update

* Add changelog

* Test fix
 2020-08-25 05:55:54 -04:00
vedion 31d736915f
- Adding missing null guard (#2049) 
* - Adding missing null guard. Guard needed when reference can't be resolved.

* Adding test for INCLUDE_ALL null guard fix

Co-authored-by: ahn <anders.havn@systematic.com>
 2020-08-22 16:59:36 -04:00
ianmarshall dc786eaff9 Refine model for storing multiple code versions. 2020-08-21 10:16:10 -04:00
ianmarshall 2126c5c556 Merge remote-tracking branch 'remotes/origin/master' into im_20200728_term_multi_version_support 2020-08-18 11:15:09 -04:00
jamesagnew 30ac44974d Add JPA Starter to componentscan exclusions 2020-08-18 08:06:21 -04:00
ianmarshall c1dcf0442c Fix broken tests. 2020-08-17 21:52:16 -04:00
ianmarshall 4db00fa604 Fix broken test and cleanup. 2020-08-17 18:14:37 -04:00
James Agnew 1fadaeeff5
Reject nvalid SearchParameter wiith no path expression (#2043) 
* Fix some changelog typos

* Reject SearchParameter with invalid path

* Add changelog

* Test fix

* Test fixes

* Test fixes

* Test fix

* One more test fix
 2020-08-17 11:21:55 -04:00
ianmarshall bd94ff96cc Merge remote-tracking branch 'remotes/origin/master' into im_20200728_term_multi_version_support 2020-08-16 21:38:41 -04:00
Ken Stevens 7dd7f2b923
resource pid userdata fix (#2044) 
* fixed resource UserData RESOURCE_PID for expunge hook (was incorrectly pointing to ResourceHistoryTable pid instead of ResourceTable pid.

* fix merge
 2020-08-16 20:48:39 -04:00
jamesagnew 92718c7ef2 Version bump to 5.2.0-SNAPSHOT 2020-08-12 10:23:46 -04:00
jamesagnew 5fb7bd5156 Version bump to 5.1.0 2020-08-11 17:43:24 -04:00
jamesagnew 90ebaf8549 Add one more test for #2023 2020-08-11 08:54:03 -04:00
jamesagnew f3fbad63e7 Avoid a LOB error when expanding a valueset on Postgres 2020-08-11 08:30:48 -04:00
jamesagnew f0ed640e24 Upgrade core library dependency version 2020-08-10 09:05:04 -04:00
James Agnew e61b39fc30
Force a flush of the SearchParameter cache sooner when SPs change (#2030) 
* Force a flush of the SearchParameter cache sooner when SPs change

* Add changelog

* Test fixes
 2020-08-09 19:30:59 -04:00
jamesagnew 096f310cae Increase visibility 2020-08-09 14:23:06 -04:00
James Agnew 8f6d08dd58
Fix #2022 - Invalidate caches on expunge (#2029) 
* Fix #2022 - Invalidate caches on expunge

* Rename changelog file
 2020-08-09 14:14:28 -04:00
jamesagnew 49f4f3ef62 Add license headers 2020-08-09 13:23:45 -04:00
ianmarshall d39348d7bd Initial changes to support multiple versions for code system. 2020-08-09 11:49:04 -04:00
James Agnew 8e0023c385
Disable referential integrity for some paths (#2025) 
* Disable referential integrity for some paths

* Add changelog

* Remove unneeded file
 2020-08-09 07:09:37 -04:00
James Agnew 63ef2ce006
Fix #2012 - Always filter total from search results when consent interceptor in use (#2020) 
* consent bug test

* Fix #2012 - Always filter total from search results when consent
interceptor in use

* Add changelog

* Address coverage issues

Co-authored-by: Jens Kristian Villadsen <46567685+jvitrifork@users.noreply.github.com>
Co-authored-by: jvi <jvi@trifork.com>
 2020-08-07 09:16:02 -04:00
James Agnew 5d9d4070fb
Fix an issue with binary storage not updating correctly if a retry (#2014) 
interceptor is present
 2020-08-05 09:14:40 -04:00
Tadgh 750d693fc3
Merge pull request #1984 from jamesagnew/batch-empi-job 2020-08-04 13:21:25 -07:00
jamesagnew 03f7289ac8 Add test for #2012 2020-08-04 09:16:47 -04:00
Tadgh 2cf48eb9b9 Move field length into constants 2020-08-01 13:11:33 -07:00
Tadgh 995c188305 implement function for all concrete classe 2020-08-01 13:03:37 -07:00
Tadgh 0a4d81eb85 Move getNextBatch into IResultIterator 2020-08-01 13:00:55 -07:00
Tadgh efaf09fbfa Fix java.lang.string in empiLink entity 2020-08-01 11:47:00 -07:00
Tadgh 48bf78e972 Rename service interface name 2020-07-30 12:17:14 -07:00
Tadgh 102f936156 Rework into new person deleting service 2020-07-29 12:17:07 -07:00
Tadgh 0e88f359f5 Merge remote-tracking branch 'remotes/origin/master' into batch-empi-job 2020-07-29 09:42:12 -07:00
James Agnew 3098affccb
Update path when updating resource links (#2007) 
* fix resource link index reuse bug

* Resolve merge conflicts

Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-07-28 21:40:56 -04:00
James Agnew 6a8e09addf
Ensure that parent structuredefinitions are snapshotted before (#2005) 
* Ensure that parent structuredefinitions are snapshotted before
snapshotting child

* Add changelog
 2020-07-28 11:46:58 -04:00
Tadgh 82dcc395ec Merge branch 'master' into batch-empi-job 2020-07-27 14:59:27 -07:00
James Agnew 3a7ac0debc
Correct invalid decimal numbers stored in DB (#2003) 
* Correct invalid decimal numbers stored in DB

* Add changelog
 2020-07-27 13:33:27 -04:00
jamesagnew c6769ef075 Add test for #1999 2020-07-25 15:17:25 -04:00
James Agnew a6fd6254db
Speed up loinc ingestion (#1991) 
* Speed up loinc ingestion

* Add some logging
 2020-07-23 09:20:33 -04:00
Tadgh bbe6d5600e Address review comments 2020-07-22 11:58:08 -07:00
jamesagnew 5f1078ac13 Cleanup of package installer 2020-07-21 11:43:57 -04:00
Tadgh 4ec2be4ff5 Merge branch 'master' into batch-empi-job 2020-07-21 07:54:18 -07:00
Tadgh e82451533f Move provider logic. Fix tests to reflect. Remove now-dead methods 2020-07-21 07:52:51 -07:00
jamesagnew c44c1ff11f Wrap NPM loader in a try-catch 2020-07-21 09:57:10 -04:00
Tadgh de9621602b Update provider and create test skeletons for empi batch run 2020-07-18 18:18:21 -07:00
Tadgh 62b5221c3f Move Empi Batch work to the BaseHapiResourceProvider, allowing manual EMPI runs on a server/type/ID basis. 2020-07-18 13:36:14 -07:00
Tadgh 4fa4dd1c48 Update Javadocs 2020-07-17 13:39:39 -07:00
James Agnew 5db90d3e6e
Address issues when importing US Core (#1986) 
* Work on US Core import

* Work on US Core

* Resolve issues with US Core import

* Test fix
 2020-07-17 15:28:16 -04:00
Tadgh e540e4b0a2 Minor addition to PointcutLatch to support an inline runnable 2020-07-17 12:06:19 -07:00
Tadgh 1e12c740f6 Merge branch 'master' into batch-empi-job 2020-07-17 09:28:10 -07:00
Tadgh 92461b6346 wip 2020-07-17 09:00:15 -07:00
jamesagnew b57681da59 License header updates 2020-07-17 08:54:20 -04:00
Ken Stevens ebd6ca4b64
Empi 3 ruleset version (#1978) 
* add rule version

* add rule version

* Rough in model for Golden Record.

* Test Link Rule Version

* add eid match boolean

* added new fields to EmpiLink to provide more information about how the link was created

* add logging to check an edge case

* all tests pass

* wip with failing tests

* tests pass

* FIXME

* optimize imports

* test score in provider output

* FIXME

* FIXME

* Fix jpa test app context

* fix migration string length

* review feedback param name

* review feedback javadoc

* review feedback javadoc

* bean config reorganization for cdr

* add more tests
 2020-07-17 08:31:15 -04:00
Tadgh 6bb92717f5 Merge branch 'master' into batch-empi-job 2020-07-16 11:00:32 -07:00
Ibrohim Kholilul Islam 5a79304893
Implement GraphQLQueryBodyParameter and GraphQLQueryBody annotation (#1896) 
* implement GraphQLQueryBodyParameter and GraphQLQueryBody annotation

* GraphQLQueryBodyParameter to recognize application/graphql

* fix 500 error on method without @GraphQLQueryBody

* refactor to processGraphQlGetRequest and processGraphQlPostRequest

* add testGraphPostContentTypeJson and testGraphPostContentTypeGraphql to GraphQLR4RawTest

* fix imports
 2020-07-16 09:25:26 -04:00
jamesagnew 962055e092 Undo extra logging in tests 2020-07-15 13:47:19 -04:00
James Agnew 077ee02771
Fix validation for enumerated ValueSets (#1982) 
* Allow code validation against enumerated VS

* Work on validation

* Work on this

* Work on tests

* Work on validation

* Work on tests

* Work on validation

* Test fixes

* Add changelog

* For a change

* Test fixes
 2020-07-15 13:38:14 -04:00
James Agnew 063bf4237c
Allow ConceptMap with no explicit group source/target (#1983) 
* Allow ConceptMap with no explicit group source/target

* Add changelog
 2020-07-15 12:57:10 -04:00
James Agnew 29bf6b8171
Fix a bug validating ValueSets (#1981) 
* Fix a buig validating ValueSets

* Test fix
 2020-07-15 09:25:34 -04:00
jamesagnew addcdc9269 Make method transactional 2020-07-14 19:12:40 -04:00
jamesagnew d6f6ec2d66 License headers 2020-07-13 16:57:24 -04:00
Tadgh 677bc5577b wip 2020-07-13 12:00:19 -07:00
James Agnew baba4cc240
Avoid version conflicts on current writes (#1971) 
* Add auto retry of transactions

* Experiment in Maven build

* Transaction autoretry

* Work on transaction retries

* Work on transaction retry

* Work on transaction retry

* Fix tests

* Avoid version conflicts

* Add changelog

* Resolve LGTM issue

* FIx transaction scope error

* Test fixes

* Test fix

* Test fixes

* Test fix

* Test fixes
 2020-07-13 08:51:13 -04:00
James Agnew 5c14a6c217
Revert pointless SQL optimization (#1977) 
* Revert pointless SQL optimization

* Fix tests
 2020-07-09 22:14:25 -04:00
James Agnew 1449b9cb0a
Install NPM resources correctly (#1972) 
* Install NPM resources correctly

* Fix tests
 2020-07-09 18:37:55 -04:00
James Agnew c949349a41
Correctly validate ISO 3166 codes (#1967 update) (#1973) 
* Add tests

* Test fixes

* Fix tests

* Test fix

* One more test fix
 2020-07-09 18:34:26 -04:00
Ibrohim Kholilul Islam 7a44fa3eb3
Fix GraphQL Array of Argument should be ORed (#1966) 
* provide IQueryParameterOr instead of IQueryParameterType to params.add

* add tests
 2020-07-08 10:38:50 -04:00
Tadgh 86f2761580 Merge branch 'master' into batch-empi-job 2020-07-07 07:52:42 -07:00
Tadgh 5b402de581 Add EmpiTargetType to link 2020-07-07 07:51:41 -07:00
Tadgh f82a53e6f9 Merge branch 'master' into batch-empi-job 2020-07-06 13:12:20 -07:00
Tadgh 3081df3cbd
Merge pull request #1969 from jamesagnew/empi-interceptor-bug 
EMPI Storage interceptor bug fix
 2020-07-06 13:10:39 -07:00
jamesagnew 489bd77dd4 Make constraint name comparisons case insensitive 2020-07-06 14:58:03 -04:00
Tadgh 84da932187 fix test 2020-07-06 11:36:47 -07:00
James Agnew 6fb6675b1e
Resolve validation errors to ValueSet with UCUM (#1948) 
* Add tests for validation errors

* Work on validation errors

* Bump core version

* Fix validation errors

* Test fixes

* Add changelog

* Test fix

* Test fix

* Test fix
 2020-07-05 19:59:21 -04:00
James Agnew f356c7c385
Migrate to JUnit5 (#1952) 
* Work on junit

* Work on junit 5

* Work on junit 5

* Bump errorprone vcersion

* Work on tests

* Junit 5 tweaks

* Fixes

* Work on tests

* Work on junit5

* Work on tests

* Test fixes

* Work on junit5

* Test work

* Get junit5 working

* Test fix

* Work on tests

* WOrk on tests

* Work on tests

* fixes

* Compile fix

* One more tweak

* Compile fix

* Add changelog

* Fix compile error

* Compile fix
 2020-07-04 18:28:16 -04:00
Tadgh 25d8668f55 Add Basic provider method, skeleton of tests 2020-07-03 15:21:32 -07:00
James Agnew 290577ff3e
Remove unnecessary type predicate (#1963) 
* Remove unnecessary type predicate

* Add changelog
 2020-07-03 17:54:25 -04:00
IanMMarshall e23e222f80
Merge pull request #1960 from jamesagnew/im_20200630_code_system_load 
Accidentally merged pull request before pushing changes from code review
 2020-07-03 16:29:34 -04:00
Tadgh 6259eada3c Fix parameter names. These are not partitions 2020-07-03 13:18:48 -07:00
ianmarshall b1ff6cbe37 Changes from code review 2020-07-03 14:25:24 -04:00
Tadgh 63bf9cca1b
Merge pull request #1961 from jamesagnew/bulk-intermittent 
Bulk intermittent bug
 2020-07-03 11:19:51 -07:00
Tadgh 4ff63e2493 Remove unnecessary logging. Spring batch already logs this 2020-07-03 10:21:04 -07:00
Tadgh d09f410b4d Tidy logging, increase timeout to 120 because clocks 2020-07-03 10:15:57 -07:00
Tadgh a84a41643d Increase awaitility timeout for bulk export of ALL resources 2020-07-03 10:08:34 -07:00
ianmarshall 4e5ca2ee15 Changes from code review 2020-07-03 13:08:11 -04:00
Tadgh 38cb526696 Add logging 2020-07-03 09:40:52 -07:00
ianmarshall 46abdfafe0 Merge remote-tracking branch 'remotes/origin/master' into im_20200630_code_system_load 2020-07-02 13:29:17 -04:00
ianmarshall 557f732e17 Cleanup and improved Unit tests. 2020-07-02 12:03:15 -04:00
Ken Stevens 714bd6216e
Empi 70 phonetic indexing (#1941) 
* start with failing test

* test passes with fixmes

* javadoc and config

* pre-review cleanup

* generalize encoding

* test passes, but indexing needs to be optimized

* test passes, but indexing needs to be optimized

* step 1 of optimization.  big refactor of all predicates

* step 2 of optimization: determine phonetic encoder at time of RuntimeSearchParam creation

* integrated new phonetic encoders into empi

* phonetic search implemented

* IT passes

* pre-review cleanup

* final pre-review cleanup

* final pre-review cleanup

* Fix compile error

Co-authored-by: James Agnew <jamesagnew@gmail.com>
 2020-06-30 17:36:54 -04:00
jamesagnew bb17688680 Add test for #1780 2020-06-30 17:03:16 -04:00
ianmarshall 0788e79d51 Fix to address deferred save of TermConcept when code system version changes prior to save. 2020-06-30 15:07:14 -04:00
jamesagnew 2cdef055aa Missed commit on #1951 
Squashed commit of the following:

commit f820135996
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Tue Jun 30 14:29:24 2020 -0400

    Address review comments

commit 11c4f9defb
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Tue Jun 30 09:38:16 2020 -0400

    Fix LGTM warning

commit b650fdb9ea
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Tue Jun 30 09:20:52 2020 -0400

    Test fix

commit 6ebcceeb5c
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Mon Jun 29 18:49:01 2020 -0400

    Add changelog

commit 4a1d7383b0
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Mon Jun 29 18:46:52 2020 -0400

    Bundle transmission

commit 88bd4abf0c
Merge: 7cde945281 25fc747b9f
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Mon Jun 29 17:31:23 2020 -0400

    Merge branch 'master' into ja_20200617_subscription_send_bundles

commit 7cde945281
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Mon Jun 29 17:10:33 2020 -0400

    Work on seed bundles

commit ed2e62752e
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Mon Jun 29 09:39:10 2020 -0400

    Work on subscriptions

commit 52addcff59
Merge: 64a9eaa4de bf8de84801
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Sat Jun 27 18:09:23 2020 -0400

    Merge branch 'master' into ja_20200617_subscription_send_bundles

commit 64a9eaa4de
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Wed Jun 17 18:32:17 2020 -0400

    Start work

commit f74eba5397
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Wed Jun 17 18:28:18 2020 -0400

    Terser should create correct Enumeration on create
 2020-06-30 14:31:40 -04:00
James Agnew fa4bbe3685
Allow search criteria as subscription delivery mechanism (#1951) 
* Terser should create correct Enumeration on create

* Start work

* Work on subscriptions

* Work on seed bundles

* Bundle transmission

* Add changelog

* Test fix

* Fix LGTM warning
 2020-06-30 14:29:09 -04:00
James Agnew 072f3a422a
Use read partition for finding update candidate on upsert (#1945) 
* Use read partition for finding update candidate on upsert

* Add changelog
 2020-06-29 18:22:27 -04:00
Tadgh 8df0448f88 Fix import 2020-06-29 11:04:03 -07:00
Tadgh 4e789fbf42 Fix import error 2020-06-29 11:01:38 -07:00
Tadgh e365e643ba
Merge pull request #1906 from jamesagnew/spring-batch-integration 
Spring batch integration
 2020-06-28 16:10:43 -07:00
jamesagnew be23eb3cfc Move the flush into the existing transaction 2020-06-27 18:06:37 -04:00
jamesagnew dac516828e Move validation settings bean 2020-06-26 18:31:13 -04:00
Tadgh 16039af110 Fix up samlpe starters 2020-06-26 13:15:31 -07:00
Tadgh b31b6652a9 Add async to the job launcher, fix test to reflect this 2020-06-26 11:51:01 -07:00
Tadgh 21567fdc43 Tidy await 2020-06-25 11:42:17 -07:00
Tadgh ed155e7657 wip 2020-06-25 10:37:02 -07:00
Tadgh 1d9641a736 fix empilinks 2020-06-25 10:28:03 -07:00
Ken Stevens 93da042d19 fix empi tests so they work with Spring Batch 
(all but one test fixed)
 2020-06-25 11:14:42 -04:00
Tadgh 06e1368388 Re-add comment 2020-06-24 21:00:45 -07:00
Tadgh 3da4ad280b undoes merge issues 2020-06-24 20:00:52 -07:00
ianmarshall 55ff15d039 Merge remote-tracking branch 'remotes/origin/master' into im_20200619_mariadb_expand_valueset_fix 2020-06-24 17:43:34 -04:00
Tadgh 64dbd038c9 Increase min thread count for batch. Add new which waits for all bulkexport jobs to be done 2020-06-24 13:16:11 -07:00
ianmarshall 5e3e7c46a8 Changes to support valueset expansion with Elasticsearch. 2020-06-24 15:48:06 -04:00
Tadgh a7740922f9 Specify version 2020-06-24 11:02:52 -07:00
Tadgh bb7a773f41 Merge branch 'master' into spring-batch-integration 2020-06-23 16:02:41 -07:00
James Agnew e65c264927
Support double _has expressions (#1939) 
* Support nested _has queries

* Add changelog
 2020-06-23 17:58:47 -04:00
James Agnew 6825d2fcf0
Reduce DB roundtrips for revincludes (#1937) 
* Reduce DB roundtrips for revincludes

* Add changelog
 2020-06-23 16:26:04 -04:00
James Agnew 67d363f9e1
Add setting to allow validation of reference targets (#1932) 
* Add setting to allow validation of reference targets

* Add changelog

* Add changelog

* License headers

* Plugin version bump

* Experiment with Maven build
 2020-06-23 11:35:10 -04:00
Diederik Muylwyk ce0cb8916e Improve tests. 2020-06-22 17:22:21 -04:00
Diederik Muylwyk 314df43091 BaseValidationSupportWrapper.expandValueSet(...) and ValidationSupportChain.expandValueSet(...) were incorrectly replacing expansion options (i.e. offset and count) with null. 2020-06-22 16:52:52 -04:00
ianmarshall 5bf1e94a23 Fix to accomodate MySQL and MariaDB. 2020-06-19 17:26:45 -04:00
James Agnew 46c00f4efb
Update for Loinc 2.68 (#1917) 
* Work on loinc updates

* Work on loinc upload

* Clean up CLI config

* Add changelog

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/TermLoaderSvcImpl.java

Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/TermLoaderSvcImpl.java

Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>

* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/TerminologyUploaderProviderR4Test.java

Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/loinc/LoincUploadPropertiesEnum.java

Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>

* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/term/TerminologyLoaderSvcLoincTest.java

Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>

* Clean up imports

* LOINC fixes

* Loinc loader fixes

Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
 2020-06-18 16:55:11 -04:00
James Agnew b6540064ea
Improve TX scoping for validation (#1925) 
* Improve TX scoping for validation

* Test fix

* Test fix

* Some cleanup

* Test fixes

* Test fix
 2020-06-17 14:04:12 -04:00
Tadgh d32ad74402 some renaming 2020-06-15 21:49:34 -07:00
Tadgh 9222fa3f59 change transaction call 2020-06-15 15:17:25 -07:00
Tadgh eccd280d71 Fix test error 2020-06-15 11:24:39 -07:00
Tadgh 798fdb9cc2 Merge branch 'master' into spring-batch-integration 2020-06-15 09:10:41 -07:00
jamesagnew ac0d8c0fe1 Test fixes 2020-06-14 15:32:50 -04:00
Tadgh 4270636d43 Merge branch 'master' into spring-batch-integration 2020-06-12 16:20:54 -07:00
Tadgh 928aafba1e Rename bean 2020-06-12 16:18:04 -07:00
Tadgh 0f469c1a56 Rework to allow for job creation inside of batch 2020-06-12 14:20:50 -07:00