1e554731bb
Additional cleanup and test fixes.
2020-05-25 18:25:25 -04:00
816f409a8a
Re-factor lastn entities to locate them is same package as other Search Parameter entities.
2020-05-25 11:37:01 -04:00
4d378ee0ed
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-cli/hapi-fhir-cli-jpaserver/src/main/java/ca/uhn/fhir/jpa/demo/CommonConfig.java
# hapi-fhir-jpaserver-base/pom.xml
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/ISearchParamExtractor.java
2020-05-22 17:04:01 -04:00
d1b963321a
MVP EMPI implementation ( #1857 )
...
EMPI Initial Implementation (still plenty of known gaps)
2020-05-22 15:03:20 -04:00
5b2181a563
Implement FHIR Patch ( #1850 )
...
* Start working on FHIRPatch
* More work on fhirpatch
* Work on FHIR Patch
* Add patch
* Test fixes
* Test fixes
* Get tests fixed
* Chnage to trigger a build
* Compile fix
* Dependency version fixes
* Test fix
* COmpile fix
* Try to fix build
* Test fix attempt
* Another build attempt
* Another build tweak
* Cleanup
2020-05-20 19:43:55 -04:00
d2b54d6203
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/SearchBuilder.java
2020-05-19 15:20:06 -04:00
52c8e3551c
Version bump to 5.1.0-SNAPSHOT
2020-05-15 14:43:32 -04:00
fe0e07a313
Bump to 5.0.1
2020-05-15 05:47:01 -04:00
9fec726b0e
Add missing indexes on ResourceIndexedSearchParamDate ( #1847 )
...
* Add migration tasks for new indexes. Add new indexes to ResourceIndexedSearchParamDate
* fix dates on task, remove redundant index
* Today is not the 20th
* Fix incorrectly named migration indexes
* out of order indexes
2020-05-15 05:38:16 -04:00
529e1e1f5e
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
2020-05-14 12:09:24 -04:00
eb1d1c2b27
Changes to better support chunking of queries and paging of results for lastn operation and to monitor performance.
2020-05-14 12:08:55 -04:00
1d13e29ac0
Version bump to 5.1.0-SNAPSHOT
2020-05-12 20:04:20 -04:00
d631ecff4a
Prepare for 5.0.0
2020-05-12 11:49:18 -04:00
e56cb049f7
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
2020-05-08 09:19:44 -04:00
6cc07b6689
Make binary storage work for bulk export ( #1836 )
...
* Make binary storage work for bulk export
* Add changelog
* Build fixes
* Test fix
* Test fix
* Test fix
2020-05-07 19:20:22 -04:00
b67509d7ff
Transaction write performance fix ( #1832 )
...
* Performance fix for transactions
* Test fix
* Fixes
* Add docs
* Test fixes
2020-05-07 10:56:41 -04:00
4cced40b54
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
2020-05-05 17:19:32 -04:00
a77aa6a28e
Multitenancy Ticket 2 - #1813 ( #1821 )
...
* Work on multitenancy
* Second ticket started
* More multitenancy work
* Work on tenancy security
* Work on multitenancy
* Test fixes
* Add docs
* cs tweak
* Multitenancy fixes
* Add debug log
* Fix build
* Add headers
* Add partition selection interceptor hook
* Update hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/api/Constants.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Account for review comments
* Resolve FIXMES
* Work on tests
* Test fixes
* A bit more cleanup
* Work on multitenancy
* Update hapi-fhir-docs/src/main/java/ca/uhn/hapi/fhir/docs/ClientExamples.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/client/examples.md
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Address review comments
* Allow disabling text modifier indexing
* Add changelog
* Docs fixes
* Address review comment
* Resolve merge conflicts
* Merge master
* Compile fix
* Test fix
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-05-05 15:12:15 -04:00
35c2b7a2c1
Allow disabling text modifier indexing ( #1831 )
...
* Allow disabling text modifier indexing
* Add changelog
* Address review comment
* Resolve merge conflicts
2020-05-05 12:16:55 -04:00
dada217966
Clean up hash code calculation ( #1830 )
...
* Clean up hash code calculation
* Test fixes
* Test fix
* Test fixes
* Compile fix
* Test fix
2020-05-05 11:11:24 -04:00
f94f2fde65
Add delegating setters and getters to DaoConfig ( #1825 )
2020-04-30 14:32:22 -04:00
8f8a8a3dc2
Merge branch 'master' into date-match-bug
2020-04-29 16:17:50 -07:00
3e49e5615f
Fixing merge conflicts after merge from Master.
2020-04-25 22:14:55 -04:00
dd749791db
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
2020-04-24 16:55:45 -04:00
af43c4377a
Roll back a change that was causing test failures
2020-04-22 14:11:01 -04:00
fc6642e150
Add one more constant
2020-04-22 12:25:17 -04:00
06ae9bc64a
Update operation name
2020-04-22 12:08:10 -04:00
c7de85339c
Work on review comments
2020-04-21 20:18:06 -04:00
e6c806283e
Merge branch 'ja_20200206_multitenancy' of github.com:jamesagnew/hapi-fhir into ja_20200206_multitenancy
2020-04-20 16:58:59 -04:00
544d9fbc6c
Add migration tasks
2020-04-20 16:58:48 -04:00
bbab016ca6
Rename config
2020-04-20 12:38:04 -04:00
7248b4e18e
Finish docs
2020-04-20 11:02:27 -04:00
cd3e1c5e72
Tenancy docs
2020-04-19 10:15:51 -04:00
2ddeea37c2
Work on multitenancy
2020-04-18 17:27:06 -04:00
25cdbb15c2
Work on multitenancy
2020-04-16 15:33:48 -04:00
cd06137745
Work on multitenancy
2020-04-15 22:12:28 -04:00
925bbbbcdc
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-cli/hapi-fhir-cli-api/src/main/java/ca/uhn/fhir/cli/RunServerCommand.java
# hapi-fhir-cli/hapi-fhir-cli-jpaserver/src/main/java/ca/uhn/fhir/jpa/demo/CommonConfig.java
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/dstu3/BaseDstu3Config.java
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/r4/BaseR4Config.java
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/r5/BaseR5Config.java
# pom.xml
2020-04-13 18:35:15 -04:00
982b54df57
Work on multitenancy
2020-04-13 11:50:49 -04:00
c26a5553e9
Multitenancy work
2020-04-12 20:47:32 -04:00
e55ccf88fc
Work on multitenancy
2020-04-10 20:01:59 -04:00
e64d67f429
Consolidate changes to Command Line Tool and add/improve tests.
2020-04-10 16:58:00 -04:00
219332e9e3
Work on multitenancy
2020-04-10 11:11:29 -04:00
e0fcbe1df2
Merge branch 'master' into ja_20200206_multitenancy
2020-04-09 11:52:27 -04:00
8cdc3a72ce
Fix #1794 - Client ID and Server ID mode clash ( #1795 )
...
* Fix #1794 - Client ID and Server ID mode clash
* Try to track down intermittent test failure
2020-04-09 09:31:13 -04:00
1c738b903d
Decouple subscription submission / matching ( #1790 )
...
* Start work on subscription cleanup
* Work on subscription cleanup
* Work on subscriptions
* Subscription cleanup
* More work on subscriptions
* Queue factory cleanup
* Work on subscription cleanup
* Subscription cleanup
* Work on subscription cleanup
* Work on subscription cleanup
* Work on subscription cleanup
* Ongoing cleanup
* Subscription work
* Tests passing
* Move resource provider factory
* Test fixes
* Address review changes
* One more change
* Test fixes
2020-04-08 18:08:27 -04:00
a5b5e344ca
Test fixes
2020-04-07 19:54:45 -04:00
edc30568f2
Address review changes
2020-04-07 19:07:07 -04:00
c2e00bb73b
Bugfix on #1772
2020-04-07 14:21:42 -04:00
fef447afee
Work on subscription cleanup
2020-04-04 16:07:01 -04:00
6baf1995c9
Work on subscription cleanup
2020-04-02 20:30:19 -04:00
f819c91530
Initial implementation of lastn operation.
2020-03-31 21:55:57 -04:00
ea1f35beaa
Work on multitenancy
2020-03-31 10:33:47 -04:00
2e43c57032
Work on multitenancy
2020-03-30 09:49:17 -04:00
8e714b6b14
Work on uniques
2020-03-30 05:36:24 -04:00
62d867902f
Work on multitenancy
2020-03-29 18:16:04 -04:00
691f2c4e9a
Work on muiltitenancy
2020-03-29 13:35:20 -04:00
9df4c58122
Work on multitenancy
2020-03-27 09:22:00 -04:00
ec6fe70acb
Merge branch 'master' into ja_20200206_multitenancy
2020-03-27 05:50:08 -04:00
22413911bf
Validation api changes ( #1719 )
...
* Validation enhancements
* Work on validation api reworking
* Keep working on validation API
* Keep working on new term API
* Work on validation api
* Ongoing work on validation
* Work on integrating validation
* Work on validation API
* Add to validation API
* Work on validation
* Work on API
* Work on validation
* Work on validation API
* Work on validation API
* Work on validation api
* Work on validation API
* Work on validation api
* Validation API changes
* Work on API
* More work on validationo API
* Work on validation API
* FIxes
* WOrk on validation api
* Work on validation API
* Tests passing!
* More cleanup
* More validation API changes
* Fix intermittent test failure
* Package reorg
* Validation API work
* Work on doocumentation
* Work on API
* More work on new validation API
* Fix errorprone-reported error
* Test fixes
* Documentation updates
* Documentation tweaks
* Work on API
* Bean name adjustments
* Build fixes
* Some test fixes
2020-03-17 13:28:59 -04:00
72b9d9a350
FIx spelling mistake
2020-03-13 09:19:45 -04:00
1dc5d89013
Optmize forced ID resolution ( #1754 )
...
* Add forced ID caching
* Work on id optimization
* Test fixes
* More optimization work
* Add some docs
* Work on docs
* Test fixes
* Test fixes
* Test fixes
* Address review comments
* Compile fix
2020-03-12 17:12:50 -04:00
9f725892d3
Drop anyresource classes ( #1755 )
...
* Drop anyresource classes
* Drop invalid test
2020-03-09 14:25:30 -04:00
4bd2d1f2f9
Add columns
2020-03-04 13:49:36 -05:00
8b223a1fd9
Rework selection generation of calculator. Add null check for empty dates
2020-03-03 16:07:25 -08:00
4a160a2df3
Merge branch 'master' into ja_20200206_multitenancy
2020-03-03 09:25:19 -05:00
b1d7072c42
Add precision checker for ordinal date returning on DateRangeParam
2020-02-26 22:22:42 -05:00
f86a4c9fa1
Add date ordinals to subscription matching checker
2020-02-26 17:05:23 -05:00
2dc94de6bb
roll back change to inmemory matcher test
2020-02-26 14:31:35 -05:00
165f5fd808
fix bugs in calculating ordinal date
2020-02-26 09:32:20 -05:00
cb9906580e
Index canonical references ( #1728 )
...
* Index canonical references
* Add changelog
* Fix compile error
* Add whitespace
2020-02-25 21:45:46 -05:00
a1b6e37395
Fix bug with Period bounds not counting as first value
2020-02-25 17:03:50 -05:00
f56e38148b
Add flag to DaoConfig controlling behaviour
2020-02-25 16:43:17 -05:00
97c98254d0
Extract Common functionality out of CalculateHashesTask, build CalculateOrdinalDatesTask based on it
2020-02-25 16:09:08 -05:00
3ec772b527
rework ResourceIndexedSearchParamDate constructor to support incoming string values
2020-02-25 14:06:36 -05:00
3b41b5b960
Type migration to boxed integer to avoid int defaulting to 0
2020-02-25 11:18:39 -05:00
7f5b3394e0
Hacky first-pass of adding ordinal date field to ResourceIndexedSearchParamDate and using it for search
2020-02-24 19:34:16 -05:00
fba28950ec
Merge pull request #1693 from jamesagnew/im_20200131_remove_circular_dependency_forcedid
...
Changes to schema to loosen dependencies involving Forced ID table
2020-02-18 14:16:09 -05:00
64f07e4dc0
Includes performance enhancement ( #1702 )
...
* Includes performance enhancement
* Add changelog
* Test fix
* Fix typo
* A few coverage cleanups
* Test fix
* Fix changelog
2020-02-18 14:11:48 -05:00
f7db280099
Merge remote-tracking branch 'remotes/origin/master' into im_20200131_remove_circular_dependency_forcedid
...
# Conflicts:
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
2020-02-18 12:13:00 -05:00
ddc7b601ee
Version bump to 4.3.0-SNAPSHOT
2020-02-16 19:23:22 -05:00
4fd80cfca7
Bump to 4.2.0
2020-02-16 19:00:15 -05:00
1d1aadb813
Work on multitenancy
2020-02-09 20:57:50 -05:00
f7ec41ffc5
Work on multitenancy
2020-02-09 08:40:15 -05:00
c5c1e3196b
Resolve FIXMEs ( #1705 )
...
* Resolve FIXMEs
* Test fixes
* Test fixes
* Clean up unused code
* Add some test coverage
* Test fix
* Test fix
* Avoid intermittent
2020-02-09 08:39:46 -05:00
b2d2346228
Work on multitenancy
2020-02-07 15:18:06 -05:00
5d5b3d7639
Changes to schema to loosen dependencies between Forced ID table and the Resource and Resource History tables.
2020-01-31 11:16:01 -05:00
201ec34db4
Fix expunge issue when no tags present ( #1671 )
...
* Fix expunge issue when no tags present
* Add changelog
* Try to clean up POMs that are failing CI
* Rework dependencies
* Roll back change that did not work
2020-01-15 14:47:22 +08:00
1390ea3c06
Update FHIR R5 structures to 4.2.0 version ( #1665 )
...
* Work on upgrading core
* Work on R5 updates
* Work on core updates
* Test fix
* Update model version properties file for R5
* Bump core version
* Test fixes
* Add 4.2.0-SNAPSHOT version to versions page in docs
2020-01-14 10:27:01 +08:00
9c7f5e1b9b
License header updates
2020-01-12 10:15:08 -05:00
6fc0bdb88f
Add licene headers
2019-12-16 11:14:17 -05:00
2f89f10c64
allow users to set default group
2019-12-04 17:23:51 -05:00
f29118fa9c
move clustered quartz from cm db to pers db
2019-12-02 14:32:34 -05:00
993d8220d1
review feedback
2019-12-02 11:18:52 -05:00
959dba7611
pre review cleanup
2019-12-01 16:51:01 -05:00
321790f6bf
standardized job names and how they're scheduled
2019-11-29 10:12:13 -05:00
a0e363171d
replace FireAtInterval class with an interface for now
2019-11-29 09:21:20 -05:00
f450cea9a5
disable gap time for now
2019-11-28 17:57:52 -05:00
6f9cd56c81
moved scheduler up to hapi-server
2019-11-20 14:30:24 -05:00
8fca468e1f
remove boolean from scheduling API
2019-11-19 10:13:22 -05:00
74159dcb26
Work on refactoring how PIDs work ( #1580 )
...
* Start work on refactoring how PIDs work
* Some test fixes
* Test fixes
* Test fixes
* Restore accidentally deleted line
* One more tweak
* Rework resource link extraction
* Test fix
* Split out transaction processor
* Updates
* Test fix
* Test fixes
* Test fixes
* Clean up LGTM warning
* Fix compile failure
* One more test fix
* Fix LGTM issue
* Add spot for metadata
* Add test logging
* Remove testing code
* More test logging
* Add some test logging
* Attempty to fix intermittent test failure
* Improve exception tracking
* Work on simplifying search param registry
* Fix compile
* Fix compile errors
* Fix two test bugs
2019-11-17 14:35:19 -05:00
ianmarshall
Tadgh
James Agnew
Tadgh
Gary Graham
IanMMarshall
Ken Stevens