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351 Commits

Author SHA1 Message Date
James Agnew 906bcfb803 Version bump to 2.1 2016-08-30 10:55:55 -04:00
James Agnew d27aad487e Bump to 2.0 release 2016-08-30 10:50:04 -04:00
James 333aa0afde Correctly update versions on transactipn update 2016-08-28 22:56:59 -04:00
James 779b66c5e4 Add unit test 2016-08-11 20:55:11 -04:00
jamesagnew c193514ff7 Add eclipse files 2016-08-06 15:44:47 -04:00
James Agnew 3e7cd153fd Update DSTU3 definitions to latest 2016-08-05 12:36:41 -04:00
jamesagnew 7dbd5a21ca Fix tests 2016-07-24 09:20:54 -04:00
jamesagnew 196c11bfa2 Use new style mimetypes but keep supportuing the old ones as well 2016-07-17 18:35:06 -04:00
James Agnew 0b69367b11 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-07-13 09:22:19 -04:00
jamesagnew fa37afb61f Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-07-12 21:44:52 -04:00
jamesagnew ed941a116b Update to use GSON 2016-07-12 21:44:40 -04:00
James Agnew c550681aeb Update defs to 1.5.0 versions 2016-07-12 18:29:10 -04:00
James Agnew c3e9f618eb Version bump to 2.0-SNAPSHOT 2016-07-12 11:12:07 -04:00
jamesagnew acaf2135c5 Finalize 1.6 release 2016-07-06 07:29:20 -04:00
James Agnew 1683cf8cef Switch to jacoco 2016-06-15 17:34:50 -04:00
James Agnew e2f1beef2c Fix some tests 2016-06-14 22:03:24 -04:00
James Agnew 7e57aed5d6 Significant performance enhancements for context startup 2016-06-06 11:15:11 -07:00
jamesagnew a2954ef181 Fix build 2016-05-30 06:57:01 -04:00
James Agnew 236dfe586f Fix tests 2016-05-27 10:50:31 -04:00
jamesagnew 35ffbf1568 Sync DSTU2 validator with RI 2016-05-24 09:22:16 -04:00
jamesagnew 514da88787 Improve performance in parser when parsing large bundles 2016-04-23 13:54:16 -04:00
jamesagnew 38e80531bb Bump version to 1.6-SNAPSHOT 2016-04-22 07:05:05 -04:00
jamesagnew 846e216c04 Fix tests 2016-04-17 12:58:36 -04:00
jamesagnew 72640dc720 Correct encoding order for DSTU2 resources 2016-04-14 07:53:37 -04:00
jamesagnew 81dec23faf Correctly populate Bundle.entry.fullUrl on Hl7OrgDstu2 servers 2016-04-14 06:59:43 -04:00
jamesagnew 0780b7e472 Add tests 2016-04-14 06:36:29 -04:00
jamesagnew 2f37015d57 Clean up parsers so that elements are always encoded according to their order in the structures that contain them 2016-04-11 08:36:12 -04:00
James Agnew 1adfc4b4d9 Fix #315 - Allow declaring of custom types for specific profiles 2016-03-22 11:46:08 +01:00
jamesagnew 232afee955 Improved error messages for #305 2016-03-11 07:56:00 -05:00
James Agnew 8de41ca8b4 Attempting to reduce memory usage during tests 2016-03-06 14:38:18 -05:00
jamesagnew 1da5855c9c Add Eclipse files to git 2016-02-28 14:02:29 -05:00
jamesagnew 23f9292b50 Add support for comments in XML and JSON parsing/encoding 2016-02-08 22:05:17 -05:00
James Agnew f21851099c Version bump 2016-02-08 13:59:09 -05:00
James Agnew e0e52f96c6 Version bump to 1.4 (finally!) 2016-02-03 15:25:32 -05:00
jamesagnew 5ef88d0447 Avoid conflict in HL7org-DSTU2 structures 2016-01-21 08:49:26 -05:00
jamesagnew 1ba03f4a9b Fix #283 - Remove servlet 3.0 dependency where possible 2016-01-20 08:11:03 -05:00
James Agnew 589059256f Correct issues uncovered during connectathon 2016-01-11 07:42:13 -05:00
James Agnew c1afb4f54d Get overlay working for DSTU2.1 2016-01-07 15:04:56 -05:00
James Agnew 0fff6018eb Travis 2016-01-07 13:05:57 -05:00
James Agnew ca61ef2e23 More travis 2016-01-07 11:37:33 -05:00
James Agnew 0c8c414784 Try to get travis working 2016-01-07 11:17:54 -05:00
James Agnew 479da24cfb Bump license files 2016-01-07 08:50:07 -05:00
James Agnew 9c5a5dc248 Still more travis 2016-01-06 12:59:45 -05:00
James Agnew eb3f3a0386 Try to get travis passing yet again 2016-01-06 09:56:36 -05:00
jamesagnew 685bd9345b Add request/response validator interceptors 2016-01-03 21:52:11 -05:00
jamesagnew 5789db8743 Remove dependency on cobertura at compile time 2016-01-02 10:55:52 -05:00
jamesagnew d48761a640 Travis failing again 2016-01-02 09:35:18 -05:00
jamesagnew 718a26671f DSTU2.1 structures working 2016-01-01 16:59:19 -05:00
jamesagnew 056900f324 Lots more work on DSTU2.1 structures 2015-12-30 11:27:12 -06:00
jamesagnew 7692e5d714 More work on DSTU2.1 structs 2015-12-22 09:32:06 -05:00
jamesagnew 2469aa3725 Lots of DSTU2.1 structure work 2015-12-20 23:35:47 -05:00
jamesagnew aaf85f2323 Lots of work on DSTU2.1 structures 2015-12-20 09:29:52 -05:00
jamesagnew 3005c9a766 Still working on unit tests 2015-12-15 09:11:01 -05:00
jamesagnew ea89f3af28 Correctly return profile 2015-12-09 07:07:05 -05:00
James Agnew 2f8278ff78 Fix build 2015-12-02 10:10:10 -05:00
James Agnew 547b5290a4 Update resource defs 2015-12-01 18:35:24 -05:00
jamesagnew d47e0e5e77 Add DSTU2.1 resources 2015-11-29 11:43:09 -05:00
jamesagnew e6b47855e6 Merge branch 'master' of git://github.com/petervanhoute/hapi-fhir into petervanhoute-master 2015-11-27 14:59:53 -05:00
James Agnew c78be081ef Add CLI test 2015-11-20 10:30:10 +01:00
James Agnew 1c82a692f6 Try to reduce memory for unit tests 2015-11-16 14:13:34 +01:00
James Agnew e7dda532c6 Tests are failing on Travis but not locally... Argh 2015-11-16 14:00:35 +01:00
James Agnew 18f7e958d2 Debug info for failing test 2015-11-15 20:17:36 -05:00
James Agnew 2f12c9ed01 Bump version to 1.4-SNAPSHOT 2015-11-15 20:11:05 -05:00
James Agnew f9f33f059b Version bump to 1.3 2015-11-15 12:53:02 -05:00
James Agnew 614b7e09e5 Bump to 1.0.2 FHIR definitions 2015-11-15 12:22:56 -05:00
James Agnew d3685e72ba Fix #241 and fix #247 - Don't encode UUID IDs on resources, and preserve 
bundle type when retrieving pages
 2015-10-29 15:38:19 -04:00
jamesagnew c31900b827 JPA performance tweaks: Avoid unneccesary fulltext index pass during transaction and tag lookup 2015-10-25 12:18:21 -04:00
jamesagnew 938a251ae9 Cleanup tests for java config in JPA 2015-10-19 20:19:40 -04:00
James Agnew e9d18af5d9 Bump library versions 2015-10-14 18:11:52 -04:00
James Agnew 8794de7a22 Improve validation messages 2015-10-08 18:31:30 -04:00
petervanhoute 7f910974a2 create seperate response and server interfaces and classes for servlets and jaxrs 2015-10-07 17:11:16 +02:00
James Agnew 43aad1eb98 Properly support chains in JPA conditional URLs 2015-10-04 15:38:58 -04:00
James Agnew aa32e6f0a9 Improve ValueSet operations in JPA 2015-10-02 12:37:56 -04:00
James Agnew 68a5bd3b23 Add tests 2015-09-29 17:04:14 -04:00
James Agnew ca8c257833 Support lastupdate filtering and sorting on JPA everything operation 2015-09-29 13:24:33 -04:00
James Agnew 1cc6a05273 FIx validation for resources using v2 tables 2015-09-29 10:51:36 -04:00
jamesagnew 9492744018 Work on subsciprions 2015-09-28 09:06:57 -04:00
James Agnew 072c1ece87 Send Accept header on client requests, and allow string responses in 
QuestionnaireResponse validator for questions of type OPENCHOICE
 2015-09-24 13:40:07 -04:00
jamesagnew 70e942e9f8 Version bump to 1.3-SNAPSHOT 2015-09-19 11:00:57 -04:00
jamesagnew 31934ff582 Version bump to 1.2 2015-09-16 07:09:03 -04:00
James Agnew 73121e222c Add tests 2015-09-15 14:11:55 -04:00
James Agnew 2961d2e91b POM cleanup 2015-09-15 10:28:09 -04:00
jamesagnew b1df85eb37 Validation now working completely in JPA server 2015-09-15 08:27:49 -04:00
jamesagnew 45d7d9a922 Documentation only 2015-09-14 21:20:16 -04:00
jamesagnew c96d5efe1f Work on updating validator 2015-09-14 08:22:43 -04:00
jamesagnew d0bac3d419 Work on CLI tool 2015-09-13 22:06:31 -04:00
jamesagnew 8120ab2228 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-09-09 22:46:48 -04:00
jamesagnew 437625505c Add some tests and some cleanup of unused code 2015-09-09 22:41:10 -04:00
de Beaubien, Bill 5b64a7f569 #221 and now, with null-checking so the tests don't break... 2015-09-09 17:06:27 -04:00
de Beaubien, Bill b1db2bf2d8 Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir 2015-09-09 16:47:20 -04:00
de Beaubien, Bill 27764da19a #221 Conformance date now defaults to the build date/time 2015-09-09 16:47:07 -04:00
James Agnew 2a3088f2e2 Add tests 2015-09-09 16:08:21 -04:00
jamesagnew aa8334a99a Merge remote-tracking branch 'upstream/master' into osgi-pull-request 2015-09-09 08:41:45 -04:00
bdenton daedf63c46 Decouple RestfulService and ServerConformanceProvider to avoid cycle in 
Spring wiring
 2015-09-09 07:01:03 -04:00
James Agnew 69596abdc9 Once more fixing the build 2015-09-08 10:31:47 -04:00
jamesagnew a733ad0949 Fix build 2015-09-08 08:58:23 -04:00
jamesagnew bb5816d8e9 Fix second part of #216 - Correctly encode choice elements on profiled datatypes 2015-09-08 08:01:51 -04:00
miantorno e3c3600700 Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir 2015-09-04 09:08:07 -04:00
jamesagnew 773608f860 Validation documentation 2015-09-04 08:22:06 -04:00
miantorno a4d973696e Updating pom.xml files for dstu2. 2015-09-03 14:36:37 -04:00
jamesagnew f3e44eea3b Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-09-03 08:08:13 -04:00
jamesagnew 8b20f3a77d Sync to 1.0.0 FHIR definitions 2015-09-03 08:07:43 -04:00
James Agnew ae177b52e8 Populate Bundle.entry.fullUrl 2015-09-02 13:42:59 -04:00
jamesagnew 64cc5d4659 Bump FHIR version to 1.0.0 2015-09-01 08:56:07 -04:00
James Agnew a6d76cc2ca Remove SLF 1.7 API usage 2015-08-31 10:21:07 -04:00
James Agnew fc36dabc68 Fix build 2015-08-31 09:23:21 -04:00
jamesagnew a9f978a8a2 Udate to latest DSTU2 definitions 2015-08-31 08:20:24 -04:00
James Agnew bd13b53099 Fix #212 - Dont accept invalid IDs but do accept IDs starting with a 
number
 2015-08-28 15:36:56 -04:00
jamesagnew 073fa47807 Add support for _include:recurse behaviour 2015-08-27 19:44:51 -04:00
jamesagnew bec43b3fdc Fix tests 2015-08-24 08:29:02 -04:00
jamesagnew 60339d6f93 Fix #209 - _revinclude results from JPA server should have a Bundle.entry.search.mode of "include" and not "match". Thanks to Josh Mandel for reporting! 2015-08-23 22:25:25 -04:00
jamesagnew 11376024fa Fixing test related to summary and elements mode 2015-08-23 21:51:46 -04:00
jamesagnew 44ac164eca Work on #125 - Support _summary and _elements 2015-08-23 13:29:57 -04:00
jamesagnew 07d654c97b More work on validator 2015-08-21 09:03:48 -04:00
jamesagnew 34d6ae1fc5 Fix bad import 2015-08-20 21:42:35 -04:00
jamesagnew e4b732efe6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-08-20 21:35:34 -04:00
jamesagnew 00931b58a1 Work on validator 2015-08-20 20:42:56 -04:00
James Agnew e20e7d1e67 Fix resource 2015-08-20 17:08:22 -04:00
James Agnew 3901c429df More work on InstanceValidator 2015-08-20 16:17:22 -04:00
James Agnew 7645c240f4 Get instance validator working across FHIR versions 2015-08-20 15:27:24 -04:00
James Agnew 11f5aeebd9 Clean up the build and hopefully close #206 2015-08-19 11:49:00 -04:00
James Agnew bb1e8b9ddd Last commit broke cobertura 2015-08-17 15:54:00 -04:00
jamesagnew ac564a54d6 Documentation cleanup 2015-08-17 07:57:20 -04:00
jamesagnew 330dbde983 Add new interceptor hook for auditing 2015-08-16 22:09:01 -04:00
James Agnew 89a7750bf4 Start working on action interceptor framework 2015-08-14 17:05:07 -04:00
James Agnew 2766af2693 Update definitions and correctly handle exceptions in 
incomingRequestPreProcessed method in server interceptors
 2015-08-13 16:59:10 -04:00
James Agnew 24634880db Update for QA version of DSTU2 2015-08-09 11:18:04 -04:00
James Agnew 215ad9b3dc Fix broken unit test 2015-08-06 11:25:30 -04:00
James Agnew 76c076a2d1 Add test for #205 2015-08-06 11:14:52 -04:00
James Agnew c49941060b More work on QA validator 2015-07-30 19:16:16 -04:00
James Agnew 7988cc3993 More work on QuestionnaireAnswersValidator 2015-07-29 21:31:17 -04:00
James Agnew 27a1d68d5f Documentation updates 2015-07-28 14:47:58 -04:00
James Agnew 8ea0475976 Deal with composed valuesets in QuestionnaireAnswersValidatorf 2015-07-27 11:51:15 -04:00
jamesagnew e9061ef975 Remove eclipse file from git 2015-07-22 07:56:23 -04:00
James Agnew f2bf199ac7 Fix build and sync RI 2015-07-21 10:58:02 -04:00
James Agnew 56a4c1b04b Add serialization support and fix build regression 2015-07-21 09:45:53 -04:00
jamesagnew 99e92d8fca Operations in server generated conformance statement should only appear once per name, since the name needs to be unique. 2015-07-19 19:17:39 -04:00
jamesagnew a774a654ce Property document OperationDefinitions generated automatically by server 2015-07-19 11:10:46 -04:00
jamesagnew 61cb60b293 Operations which are not resource type specific were not showing up in REST server's conformance 2015-07-18 18:44:46 -04:00
jamesagnew a35d20b999 Fix #158 - Don't encode empty tags 2015-07-18 17:35:54 -04:00
jamesagnew 3bff020c54 Add exception pre processing method to server interceptors 2015-07-18 16:31:32 -04:00
jamesagnew 57ee1fe220 Fix unit tests failing due to OperationDefinition changes 2015-07-18 14:43:59 -04:00
jamesagnew 41283d4ed4 Add $get-resource-counts operation to JPA server 2015-07-17 18:28:47 -04:00
jamesagnew 2fc0d4c7a2 Clean up exception handling in server, and add QuestionnaireAnswers validation for JPA server 2015-07-16 20:16:51 -04:00
James Agnew 3bba0c0425 Add validation module for QuestionnaireAnswers 2015-07-15 17:28:12 -04:00
James Agnew 901c5c29cf Version bunp for 1.2 2015-07-14 18:08:06 -04:00
James Agnew 3fa7c54526 Tag 1.1 release 2015-07-13 10:31:02 -04:00
jamesagnew c8ce723a1d DOcumentation updates 2015-07-13 08:16:48 -04:00
James Agnew c22aa14d29 Clean up the validation framework and integrate the QuestionnaireAnswers 
validator
 2015-07-10 16:05:40 -04:00
jamesagnew d5b99c2c10 Fix broken build 2015-07-08 22:27:49 -04:00
James Agnew 3bfecb27a8 Update RI structures 2015-07-08 17:57:53 -04:00
jamesagnew 70222ecf15 More fix build 2015-07-05 17:43:18 -04:00
jamesagnew 8a86ad5e76 Wide sweeping changes to get RI structures working in server mode 2015-07-05 17:14:15 -04:00
James Agnew 70d4abdf06 Server should include lastUpdated in search responses if one is supplied 
by the implementation. Also automatically include in this in JPA server
 2015-06-22 16:27:08 -04:00
jamesagnew 9758f32021 Fix build 2015-06-21 12:22:14 -04:00
jamesagnew b48843a128 More work on test coverage 2015-06-21 12:16:33 -04:00
jamesagnew e9ac63688c Finally have travis and coveralls working! 2015-06-21 00:48:10 -04:00
jamesagnew 71fbfe5214 Add consolidated test package and clean up tests for cobertura 2015-06-20 14:23:34 -04:00
James Agnew 39dd48bc41 Automatically populate Bundle.entry.base when encoding a bunde 2015-06-17 14:32:11 -04:00
James Agnew 6f7ef96b97 Support $validate operation correctly in DSTU2 clients and in testpage 
overlay
 2015-06-16 11:56:30 -04:00
James Agnew 62b0707b36 Support attributes longer than 512kb. 2015-06-04 12:19:10 -04:00
James Agnew 9b97fb0e97 Enable validation ($validate) operation in DSTU2 style 2015-06-04 10:56:13 -04:00
jamesagnew e5b402cb14 Allow raw access to resource body in create/update/etc 2015-06-01 09:21:41 -04:00
jamesagnew 064f113133 Clean up resource parameter handling 2015-05-31 19:38:01 -04:00
jamesagnew 4a5e13b301 Work on synchronizing the HL7.org structures 2015-05-31 16:52:31 -04:00
jamesagnew 11d22b1b1f Site updates and clean up RI IdType 2015-05-28 08:35:49 -04:00
James Agnew ec3c94a823 Update RI structures 2015-05-22 17:32:36 -04:00
James Agnew b89ee3d2a7 Add unit test for JPA 2015-05-22 16:30:14 -04:00
James Agnew 0f9d4b8059 Add interceptor for syntax highlighting 2015-05-15 18:59:54 -04:00
James Agnew 3e382ab760 More work on RI structs 2015-05-08 18:49:31 -04:00
jamesagnew 0f2976358f Version bump to 1.1-SNAPSHOT with more loggging 2015-05-08 08:54:40 -04:00
James Agnew 3a5d2e892a About to commit to SVN as well 2015-05-05 18:16:22 -04:00
James Agnew 05cccdb6e5 More work on structs 2015-05-05 13:16:10 -04:00
James Agnew ae81ad29f6 Unit tests all passing 2015-05-02 14:04:43 -07:00
James Agnew aa2f2cee96 Merge branch 'hl7org_structs' of github.com:jamesagnew/hapi-fhir into hl7org_structs 2015-05-01 13:52:24 -07:00
James Agnew 880ab84ce8 More work on structs 2015-05-01 12:27:56 -07:00
James Agnew 3fe60c3f1b Start syncing changes with SVN 2015-05-01 13:07:47 -04:00
James Agnew 629bc5b7d3 HL7org unit tests all pass 2015-05-01 11:09:29 -04:00
jamesagnew 147305b70e More work on getting HL7org structs working 2015-04-22 07:46:33 -04:00
jamesagnew b222b76611 Merge branch 'master' of github.com:jamesagnew/hapi-fhir into hl7org_structs 
Conflicts:
	hapi-fhir-android/pom.xml
	hapi-fhir-base/src/main/java/ca/uhn/fhir/parser/JsonParser.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/parser/XmlParser.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/server/RestfulServerUtils.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/util/FhirTerser.java
	hapi-fhir-testpage-overlay/.gitignore
	src/changes/changes.xml
 2015-04-21 13:30:58 -04:00
James Agnew b42737262b Work on HL7org structs 2015-04-20 07:31:45 -04:00
James Agnew eddcf5f4d8 Merge branch 'hl7org_structs' of github.com:jamesagnew/hapi-fhir into hl7org_structs 2015-04-15 16:37:35 -04:00
James Agnew 3db46c2db2 More work on hl7org strfucts 2015-04-15 16:37:24 -04:00
jamesagnew cfff2006ec More work on HL7org structs 2015-04-15 07:49:18 -04:00
jamesagnew 2edc7eadab Work on HL7.org structs 2015-04-13 08:32:49 -04:00
James Agnew c5e75ebe60 Work 2015-04-10 18:14:42 -04:00
jamesagnew b6f2b57ed9 Work on HL7 structs 2015-04-10 08:02:05 -04:00
James Agnew c484425c78 Update license file generation and gitignores 2015-03-26 11:57:07 -04:00
jamesagnew 986094617a Fix #135 - Remove Eclipse and IntelliJ artifacts from version control 2015-03-26 07:56:24 -04:00
James Agnew c6f65b070a Merge pull request #121 from esteban-aliverti/hl7org-dstu2_fix 
Added net.sf.saxon:saxon-he
 2015-03-11 15:51:03 -04:00
esteban-aliverti a5c6091896 Added net.sf.saxon:saxon-he 2015-03-09 08:53:09 +01:00
Andrea Scarpino 7c634219e9 Add missing dependence to structures-hl7org-dstu2 
saxon is used in Utilities.java
 2015-03-05 11:54:07 +01:00
jamesagnew b68d07b546 Work on operation support in client 2015-03-04 08:44:31 -05:00
jamesagnew a81e081798 Work on transaction support for DSTU2 2015-03-01 18:00:06 -05:00
James Agnew db65d5db59 Work on support for new bundle format in DSTU2 2015-02-27 18:09:24 -05:00
jamesagnew 3812260a55 Fix #110 - Support DSTU2 Security Labels, merging in Pull Request from Mohammad Jafari - Merge branch 'master' of https://github.com/mochaholic/hapi-fhir into mochaholic-master 
Conflicts:
	hapi-fhir-structures-dstu2/src/test/java/ca/uhn/fhir/rest/server/UpdateConditionalTest.java
 2015-02-24 07:49:31 -05:00
mochaholic 64715477bd Merged with the latest master snapshot. 2015-02-23 11:35:27 -07:00
James Agnew 0f01260301 Get extensions working for HL7.org structures 2015-02-20 17:34:13 -05:00
James Agnew dbeb6c09c6 More work on new structures 2015-02-18 17:00:47 -05:00
jamesagnew 70aa4e812d Work on build 2015-02-16 23:02:50 -05:00