Commit Graph

924 Commits

Author SHA1 Message Date
jamesagnew a8a97ae6b2 Two test fixes 2019-01-07 09:18:11 -05:00
jamesagnew 3d94761bcb Improve response for transactions 2019-01-06 18:08:32 -05:00
jamesagnew b2c7a2003e Prevent a nullpointerexception in AuthorizationInterceptor 2019-01-06 16:42:29 -05:00
jamesagnew 39f2062802 FIx errorprone detected issues 2019-01-05 13:43:55 -05:00
jamesagnew 8f8385627f Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-01-05 11:33:08 -05:00
jamesagnew 98d93df12a License header updates 2019-01-04 16:22:15 -05:00
James Agnew 5b8fee869e Add config options for default Prefer header and _total param on server 2019-01-04 16:12:45 -05:00
Corina Dalaban 3a3d503772 head operation should return 200OK response code instead of 400
BadRequest
2018-12-21 05:40:35 -05:00
Ken Stevens 84a34eb3c9
Subscription module support (#1147)
* Reorganizing packages and dependencies to support standalone subscription running within a CDR container where all hapi modules are on the classpath.

Moved Subscription registry out of interceptor and introduced SubscriptionLoader

* Created ActiveSubscription and moved cache bits into it

* Moved ExecutorQueue stuff out into its own class

* Add test and supporting code to validate SubscriptionConstants.EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION behaviour

* Added SubscriptionCheckingSubscriber

* Moved a few beans to @ComponentScan

* Replaced use of beanFactory with concrete factory classes

* Switched test to use subscribablechannel

* Added SubscriptionLoaderFhirClientTest

* Confirm that our SubscriptionProviderFhirClient works with a live fhir client

* Register interceptors with DaoConfig instead of RestServer.
Also, Rename @VisibleForTesting methods with ForUnitTest

* Fix triggering service so it uses new subscriptionmatcherinterceptor

* Renamed "Database" classes to "Dao"

* processing -> matching naming change
2018-12-18 13:09:06 -05:00
jamesagnew 81e8131ffc Fix broken test 2018-12-09 19:36:03 -05:00
James Agnew 67f5ba6aa0 Also allow ServeMediaResourceRawInterceptor to handle vread requests 2018-12-09 14:29:40 -05:00
James Agnew 19954fa252 Resolve failing test 2018-12-09 14:09:12 -05:00
James Agnew b442982310 Add media interceptor 2018-12-08 18:49:58 -05:00
James Agnew b2179b1696 Syntax fixes for the JPA migrator 2018-11-30 12:39:37 -05:00
James Agnew b41c222880 Require explicit declaration of authorizationinterceptor operation rules
on whether the response is authorized or not
2018-11-23 14:25:46 -05:00
James Agnew ce3b7c82ce Avoid issues when using subscription delivery in a serializing/queuing
environment
2018-11-22 17:53:42 -05:00
James Agnew 2e030eebaa Make sure that reindexing happens correctly 2018-11-21 12:06:10 -05:00
James Agnew 58388bb614 Allow client to return methodoutcome instead of resdource for operation
call
2018-11-19 11:11:49 +01:00
James Agnew 67dbc802be Better detection of binary content in ResponseHighlighterInterceptor 2018-11-18 14:32:54 +01:00
James Agnew fad53c6669 Fix a test 2018-11-16 13:15:14 +01:00
James Agnew 0d0f67b299 Add GraphQL support to public server 2018-11-16 11:41:39 +01:00
James Agnew 02b23d74fd
Merge pull request #1117 from magnuswatn/logformatfix
Fixed small log formatting error in ExceptionHandlingInterceptor.java
2018-11-15 13:38:07 +01:00
Magnus Watn 52265d248f Fixed log formatting error 2018-11-15 12:14:33 +01:00
James Agnew 75210d614b Bump to 3.7.0-SNAPSHOT 2018-11-12 22:37:52 -05:00
James Agnew 63af04a7b4 Prepare for 3.6.0 release 2018-11-12 05:40:55 -05:00
jamesagnew a3e79b5759 License updates only 2018-11-08 15:28:09 -05:00
James Agnew 17a7fd4285
Merge pull request #1071 from volsch/master
Multiple values of a HTTP header are reduced to one value.
2018-11-08 13:27:36 -05:00
James Agnew 4b790eddb6 Add additional authorization test 2018-11-07 11:01:29 +01:00
James Agnew 4315900ac0 Merge branch 'philips-3.6.0' 2018-11-01 09:15:27 -04:00
James Agnew 3bfdc61866 Fix a couple of test failures 2018-11-01 09:15:03 -04:00
jamesagnew 3f6960d82b Add multithreaded migrator tool 2018-11-01 05:42:51 -04:00
jamesagnew 31ef4c68e1 Merge branch 'philips-3.6.0' of github.com:jamesagnew/hapi-fhir into philips-3.6.0 2018-10-31 05:51:13 -04:00
jamesagnew 8955a9e54d Add threading to migrator 2018-10-31 05:50:50 -04:00
James Agnew 7acba90d15 Update search logic 2018-10-30 22:43:16 -04:00
James Agnew 6b1ea5b989 Add tests for operation method binding 2018-10-30 15:22:39 -04:00
James Agnew b66e01ce65 Allow plain server @Operation methods to declare a wildcard so that any
opeeration invocations will be direected to them
2018-10-29 10:36:32 -04:00
James Agnew aa177c1421 Authorize batch operation in AuthorizationInterceptor 2018-10-19 09:45:56 -04:00
James Agnew da2763d8c8 Merge branch 'master' into philips-3.6.0 2018-10-17 22:38:27 -04:00
James Agnew 99cd4ce5f7 Allow for _total parameter 2018-10-17 09:47:35 -04:00
James Agnew 4e252063b8 Allow transactions and batches with transaction permission in
AuthorizationInterceptor
2018-10-16 19:54:55 -04:00
James Agnew 796b12e33e Fix bug in $everything processing 2018-10-15 05:44:53 -04:00
James Agnew 51a69f0dc9 Fixes to migrator and count logic 2018-10-13 12:02:19 -04:00
James Agnew ca54409ce3 Add some null checks to the RestfulServer 2018-10-05 08:33:00 -04:00
James Agnew 62d6771814 Use a select count query for summary count searches in JPA server 2018-09-29 21:58:14 -04:00
James Agnew 3e445faf47 Squashed commit of the following:
commit df641506885e09e63f80efc6c658d01a1a3a8142
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sat Sep 29 13:47:22 2018 -0400

    Shrink validation resources

commit 4c1550eafa26f4235b4b8804741aecc03276b5c6
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Sep 28 22:45:28 2018 -0400

    Updates to get R4 working

commit 8332f15291006691ed9b07ead3e3524b0fc85510
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Fri Sep 28 09:02:13 2018 -0400

    Ongoing work on gettign R4 working

commit f7146cab7aed937bb625a8aec95744d76db00041
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Sep 28 05:21:01 2018 -0400

    More work on sync

commit f48de4a10b1bab2584fee813017d9b27b237bfa9
Merge: 9e4f3cc722 aacb78b779
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:11:29 2018 -0400

    Merge branch 'sync_r4' of github.com:jamesagnew/hapi-fhir into sync_r4

commit 9e4f3cc722668aae31a77b19bf9b032af3ae01b0
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:11:19 2018 -0400

    Fix compile error

commit 7ec29e0ceda8f9013cbabb95767cbe15b4b81303
Merge: 23f7517325 002c4b3ff7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:04:23 2018 -0400

    Merge branch 'master' into sync_r4

commit aacb78b7793ab2c71e0a2a774240ee2b5d3f9e7f
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:01:42 2018 -0400

    Keep working on getting R4 building

commit 4950de46d99897e74d41dfdb10d3d8a3435cb0c9
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Tue Sep 25 13:11:27 2018 -0400

    Ongoing work to get R4 working

commit 819d69c20e112dd3c72569ec50114ddb8263c300
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Sep 20 08:15:36 2018 -0400

    Work on getting build working

commit 2c61b6cd1205ced5d7b822cf10942c69272ea078
Merge: 16b5bb06c8 dfb4de86f1
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Sep 20 05:16:53 2018 -0400

    Merge branch 'master' into sync_r4

commit 16b5bb06c8cdaf8d67c3b80f5aa9be9fccd99aef
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Mon Sep 17 05:30:39 2018 -0400

    Work on R4 sync

commit 23f7517325a14dd2ca1eb5641296ead2776634ae
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Sep 16 10:19:00 2018 -0400

    Work on sync

commit 6cc413c1f1dea538295aa4c16c21a5677494ac4c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Sep 14 17:28:28 2018 -0400

    Work on R$ sync

commit df6f6ad2ce783b07ccc383134705d874bc5d2cf1
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Fri Sep 14 08:33:07 2018 -0400

    Work on R4
2018-09-29 13:48:35 -04:00
James Agnew 706e004b9d Bump to 3.6.0-SNAPSHOT 2018-09-19 10:24:48 -04:00
jamesagnew 321e88c811 License header updates 2018-09-14 05:25:07 -04:00
James Agnew ce6a9dbc36 Fix regression from new jetty version 2018-09-11 08:27:34 -04:00
James Agnew daef975734 Version bump to 3.5.0 2018-09-08 07:22:21 +08:00
Volker Schmidt b183bed52f Multiple values for one HTTP header were reduced to the last value. 2018-09-06 19:33:34 +08:00
James Agnew 54c07263b6 Increase code lengths 2018-08-26 12:32:35 -04:00
jamesagnew df651c830e Remove dynamic mode 2018-08-19 17:35:08 -04:00
James Agnew 78a7d64d2c
Merge pull request #1022 from alinleonard/master
Patch operation on OperationsWhichAllowPreferHeader
2018-08-12 17:55:16 -04:00
jamesagnew 7eb36c3392 Work on subscription 2018-08-11 16:14:53 -04:00
jamesagnew 159377ac16 Add details to ResponseHighlighterInterceptor 2018-08-11 13:46:34 -04:00
jamesagnew 20b1f883ba Add extendible methods to RestfulServer 2018-08-08 17:21:25 -04:00
jamesagnew d9296b8e42 Add hook for error message 2018-08-08 15:14:39 -04:00
jamesagnew 6586fc438d Fix concurrency issue in hashmap 2018-08-03 13:00:57 -04:00
James Agnew 4eb3281fa6 Merge branch 'client_enhancements' 2018-07-30 18:34:49 -04:00
James Agnew d6293cf9b3 Merge branch 'client_enhancements' 2018-07-30 09:42:38 -04:00
James Agnew db0f082222
Merge pull request #996 from anamariaradu10/master
Changes regarding behavior for Prefer header
2018-07-30 09:16:20 -04:00
James Agnew d50dda19ae
Merge pull request #912 from InfiniteLoop90/911-contains-modifier
Fixes #911 - Adds support for :contains modifier
2018-07-30 05:39:27 -04:00
jamesagnew fc9f2ec0fb FIx test issue 2018-07-29 18:20:09 -04:00
James Agnew 518092cbd4 More updates 2018-07-29 17:10:26 -04:00
anamariaradu10 3a5556006b
Merge branch 'master' into master 2018-07-27 16:59:52 +03:00
Ana Maria Radu 9c39733aff Fixed issues 2018-07-27 16:48:44 +03:00
James Agnew f03d6b7c22 Allow configuration of default page size in SimpleBundleProvider 2018-07-27 18:34:12 +07:00
James Agnew d04db790a3 Try to fix permissions issues in travis 2018-07-27 08:39:22 +07:00
James Agnew a4e4111376 Fix a unit test 2018-07-26 18:08:59 +07:00
James Agnew 3c80238f0e Ongoing work on interceptors 2018-07-24 17:22:21 +07:00
James Agnew 23083a9283 Improvements to client and SP indexing in JPA server 2018-07-23 17:37:49 +09:00
James Agnew b4aa4c0e89 Add protection against HTML injection attacks 2018-07-19 08:56:22 -04:00
James Agnew e6ca408f67 Permissions for operations 2018-07-12 18:40:15 -04:00
Alin de701a6b7f added patch for operation outcome 2018-07-09 15:35:50 +03:00
jamesagnew 6d83edabb6 License header updates 2018-07-01 20:59:04 -04:00
James Agnew 495fd9f68e Add support for patch in AuthorizationInterceptor 2018-07-01 11:46:11 -04:00
jamesagnew b3f7ab274d License header updates 2018-06-21 14:44:34 -04:00
James Agnew ed0b5f54a5 More authorizationinterceptor tweaks for better security 2018-06-12 21:52:01 +08:00
Ana Maria Radu dc476aeeea In my opinion these changes should be made in order to have the behavior
for the Prefer header values as the one explained in the official
documentation from https://www.hl7.org/fhir/http.html
2018-06-12 14:04:05 +03:00
James Agnew cc0e836680
Auth interceptor early checks (#995)
* Validator fix

* Enhance AuthorizationInterceptor so that it tries to deny access earlier
for compartment searches that are outside the allowable compartment.

* FIx DSTU2 test that wasn't updated

* More test fixes
2018-06-10 17:48:20 -04:00
James Agnew e7804b881c Fix CI issue 2018-06-06 11:39:06 -04:00
jamesagnew 3583dfd503 Correctly include project description in capabilitystatement 2018-06-03 16:19:33 -04:00
Diederik Muylwyk 0e2c57fa60 Bumping version. 2018-05-28 17:44:38 -04:00
Diederik Muylwyk 2871920734 Preparing release. 2018-05-28 10:45:47 -04:00
jamesagnew 67f21426cb Disable content header on response for non-create operations 2018-05-25 07:28:01 -04:00
jamesagnew b146a80502 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-05-23 16:09:34 -04:00
jamesagnew 92dc258c6e Update license headers 2018-05-23 16:09:23 -04:00
James Agnew 0544692dde Don't include bogus powered by header 2018-05-23 13:12:27 -04:00
James Agnew 7f85608a2e Fix accidental regression 2018-05-23 08:17:59 -04:00
James Agnew 2f2900e837 Improve indexing on JPA server in anticipation of a new indexing
strategy in HAPI FHIR 3.5.0
2018-05-23 08:09:57 -04:00
patrick-werner eef3267bb8 Forward the cause of the InvocationTargetException to the REST layer.
Discovered through #938
2018-05-17 17:38:23 +02:00
James Agnew 833cfd6988 Refactor information message 2018-05-16 17:35:40 -04:00
James Agnew d29a9a7f96 AutohrizationInterceptor should correctly recognize type-level operation
invocations
2018-05-15 16:14:10 -04:00
jamesagnew ccb859fdbe FIxes to get the synced build working 2018-05-13 08:08:34 -04:00
James Agnew b17eebd8d2 Squashed commit of the following:
commit 2be11651c2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:50:53 2018 -0400

    Update changelog

commit b3bb5f9052
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:19:28 2018 -0400

    Parameter updates

commit f6b1082ba4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 07:24:30 2018 -0400

    More test fixes

commit 81a69c265f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:26:48 2018 -0400

    Fix compile error

commit 935938e92c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:25:18 2018 -0400

    Another test fix

commit 43568a1f8d
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:18:06 2018 -0400

    Fix compile error

commit e95894e643
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:13:50 2018 -0400

    More work on tests

commit 9393fb8f4f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 05:36:27 2018 -0400

    One more fix

commit 437f5051e4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 21:32:10 2018 -0400

    Work on validator

commit 20c51add4f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 19:34:10 2018 -0400

    Validator fix

commit 7bf2b0a0e9
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 18:44:04 2018 -0400

    Fix test

commit adc73e75c9
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 17:22:34 2018 -0400

    Merge validator
2018-05-10 11:53:32 -04:00
Diederik Muylwyk 14a070a47e
927 cli tooling is needed for creating and maintaining conceptmaps using csvs (#934)
CLI tooling for import/export of ConceptMaps using CSVs has been implemented.
2018-05-10 11:12:45 -04:00
jamesagnew e299b062a6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-04-24 19:14:56 -04:00
jamesagnew f1db751d1e Update headers 2018-04-24 19:14:33 -04:00
James Agnew 09b1f547d0 Add expunge 2018-04-24 15:11:00 -04:00
James Agnew a21d0a7752 Add auth tester methods 2018-04-22 19:30:09 -04:00
Clayton Bodendein ac8e412e49 Fixes #911 - Adds support for :contains modifier
Adds support for the :contains modifier in StringClientParam.
2018-03-30 23:49:06 -05:00
jamesagnew c5b286921e Tests all passing 2018-03-30 15:18:57 -04:00
jamesagnew 180336e076 Sync to master 2018-03-29 06:54:24 -04:00
jamesagnew 418e82032f Prep for 3.3.0 2018-03-29 05:48:13 -04:00
James Agnew e9ee87210a
Merge pull request #806 from honestica/quickfix-imcompartment
fix inCompartment for a collection of owners
2018-03-19 06:16:12 -04:00
patrick-werner ff04ab3358 ${argLine} -> [at]{argLine}
see:
http://maven.apache.org/surefire/maven-surefire-plugin/faq.html#late-property-evaluation
2018-03-19 10:45:33 +01:00
jamesagnew 7e4877c524 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-03-01 06:20:46 -05:00
jamesagnew a6e59a0f76 License header updates 2018-03-01 06:20:37 -05:00
James Agnew 790aaeb4ea Tests for #872 2018-02-28 21:34:32 -05:00
James Agnew 458401864b Handle deletes properly in HashMapResourceProvider 2018-02-25 14:20:04 -05:00
James Agnew 84c72203b7 Add HashMapResourcePrvider 2018-02-25 13:16:02 -05:00
jamesagnew a395e48cd4 Don't crash when a multitenant server has a request for / 2018-02-04 18:44:37 -05:00
James Agnew 17b1ff727e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-03 15:48:09 -05:00
James Agnew 3cbf669007 Don't crash on startup if an invalid subscription is in the database 2018-02-03 15:47:48 -05:00
jamesagnew 1d541c1588 Formatting issues 2018-02-02 14:03:53 -05:00
jamesagnew a16ac6ec87 Merge changes 2018-02-02 13:21:05 -05:00
jamesagnew 351a2fc2f1 Fix #837 - Use non-legacy content-type for plain json and xml accept
header
2018-02-02 06:43:19 -05:00
jamesagnew 3f1ef0e7f6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-01 06:33:00 -05:00
jamesagnew 17edf5e727 FIx some license headers 2018-02-01 06:31:21 -05:00
James Agnew b61887e841 Improve performance of base64 validation 2018-01-30 17:37:12 -06:00
James Agnew 1c5a07b5a0 Fix #822 - Respect chained method params in a transaction search 2018-01-30 16:20:25 -06:00
James Agnew e52f582769 An experimental interceptor called VersionedApiConverterInterceptor has been added, which automaticaly converts response payloads to a client-specified version according to transforms built into FHIR. 2018-01-29 12:10:05 -06:00
James Agnew 044b9f584a Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-01-28 14:02:53 -06:00
James Agnew f976b7bf7e Add new interceptor method which enabled interceptors to modify response 2018-01-28 14:01:20 -06:00
jamesagnew 2e4f80d7a3 Fix #831 - Remove useless TagListParam annotation 2018-01-26 10:03:21 -05:00
jamesagnew 5750cfd03c Prevent double calling server interceptor methods under certain
conditions
2018-01-26 07:44:13 -05:00
jamesagnew ede32b6acc Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-01-23 11:33:52 -05:00
jamesagnew c081f7c15d More rule fixes 2018-01-23 11:33:31 -05:00
James Agnew 0677f35847 Implement tenant ID checking in authorizationinterceptor 2018-01-23 11:32:35 -05:00
James Agnew 16038ece26 Version bump to 3.3.0-SNAPSHOT 2018-01-23 10:31:01 -05:00
James Agnew 4fd3e20d06 Remove duplicate resource body creation (Merge branch 'optimize_jpa') 2018-01-21 18:16:11 +08:00
jamesagnew 001bdbc07e Version bump to 3.2.0 2018-01-13 04:07:57 -05:00
James Agnew 6468ca474a Verion bump to 3.2.0 2018-01-13 02:14:33 -05:00
James Agnew f6c9e3d0fe Add multitenancy support for server 2018-01-11 11:14:54 -05:00
jamesagnew b0e196e5cf Merge branch 'master' into optimize_jpa 2018-01-10 06:27:15 -05:00
James Agnew d375977410 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-01-08 14:14:42 -05:00
James Agnew 9a72927dbc Fix #808 - Use version from meta if not found in the resource ID 2018-01-08 14:07:27 -05:00
jamesagnew 0352d48720 Bump copyright message to 2018 2018-01-08 13:52:15 -05:00
jamesagnew 6fc88caa51 More work on optimizing JPA 2018-01-08 07:15:58 -05:00
James Agnew 377bae8c16 Allow interceptors to modify request contents 2018-01-06 14:27:32 -05:00
James Agnew b18e71d4f5 Added new callbacks to IServerOperationInterceptor to be invoked before
other operation methods
2017-12-23 17:13:33 -05:00
Jiajing LIANG cc40d47d2a fix inCompartment for a collection of owners 2017-12-14 17:29:27 +01:00
James Agnew 6c85cd1375 Improve documentation and mark redundant methods as deprecated in
IServerInterceptor
2017-12-12 21:45:54 -05:00
jamesagnew d710682fed Fix searching in JPA with _id and _content params 2017-12-05 07:25:34 -05:00
James Agnew 3e296f9d1b Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-11-25 17:53:01 -05:00
James Agnew 6afe6804db Fix #796 - Correctly escape spaces in generated URLs 2017-11-25 17:52:12 -05:00
jamesagnew 5b909b4746 Version bump to 3.2.0-SNAPSHOT 2017-11-24 13:32:47 -05:00
jamesagnew 42dd34252d Version bump to 3.1.0 2017-11-23 13:27:21 -05:00
James Agnew 4887f18bb3 Further refine #762 2017-11-23 11:05:11 -05:00
jamesagnew ffac599a30 Credit and tests for #762 2017-11-23 06:42:10 -05:00
James Agnew 193edea1a1
Merge pull request #762 from dconlan/master
Auth Interceptor - make sure Id has a type before trying to get its associated resource
2017-11-23 06:40:14 -05:00
James Agnew 6293bb112b
Merge pull request #769 from InfiniteLoop90/issue-768-exclude-stacktrace-jax-rs
Fixes issue #768 to conditionally include stacktraces for DataFormatExceptions in OperationOutcomes when using AbstractJaxRsProviders
2017-11-22 20:00:44 -05:00
James Agnew 59f4177a59 Fix #750 - Elements are not preserved in page requests 2017-11-06 19:49:50 -05:00
James Agnew 75bfb6af1b Add support for Binary X-Security-Context header in server 2017-11-02 11:38:43 -04:00
James Agnew 7c1ab11b02 Clean up places where CORS headers are declared - Related to #718 2017-10-30 16:37:47 -04:00
James Agnew 0fec0485e8 Merge pull request #717 from aehrc/feature/ifModifiedSince_bugfix_master
fix bugs with inverted test for If-Modified-Since (impl and tests)
2017-10-26 18:31:19 -04:00
James d461567433 Allow cache-control to be used with CORS 2017-10-26 09:08:10 -04:00
James 15ba0dff03 Clean up email subscription type 2017-10-26 06:02:12 -04:00
Clayton Bodendein d0e747d6ec Fixed issue #768 in a different way by wrapping the DataFormatException as an InvalidRequestException so that it still gets sent as a 400 response but now DataFormatException stacktraces can now be conditionally sent based on the ExceptionHandlingInterceptor#setReturnStackTracesForExceptionTypes(Class<?>...) configuration 2017-10-22 22:20:48 -05:00
David Conlan 1a7e43d2a8 Make sure we actually have a type associated with the resourceId or we get an exception 2017-10-17 15:07:51 +10:00
James 31fb1236a1 Reuse bundle ID when returning query cache results 2017-10-11 06:05:14 -04:00
James Agnew 87383ad802 Version bump to 3.1.0-SNAPSHOT 2017-09-27 21:23:34 -04:00
James 49bdaa1a45 Version bump to 3.0.0 2017-09-23 17:31:39 -04:00
James Agnew 984c0c387c Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-09-05 17:34:02 -07:00
James Agnew 2aa538bd56 Add ability for system to track unique constraints 2017-09-05 17:33:19 -07:00
James 0eea7b8f1f Fix android build hopefully 2017-09-01 06:39:55 -04:00
James Agnew 022b556648 Add documentation for logginginterceptor processing time variable (which
already worked, but wasn't documented)
2017-08-31 10:17:31 -04:00
James Agnew cae21f4898 Update syntax highlighter to not use tables 2017-08-28 10:26:07 -04:00
James Agnew ff8b5607f3 More test cleanup 2017-08-24 22:19:12 -04:00
James Agnew 1ec14f4a31 Small perf improvement for JPA terminology 2017-08-24 13:07:05 -04:00
Michael Lawley a4365f9b83 fix bugs with inverted test for If-Modified-Since (impl and tests) 2017-08-24 13:54:59 +10:00
James 94953e8a5c Merge in latest work on subscriptions and GraphQL 2017-08-14 22:00:59 -04:00
James b9494c179a Squashed commit of the following:
commit fa508e27b2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 20:38:12 2017 -0400

    Fix android tests

commit dea567e960
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 20:25:28 2017 -0400

    Still trying to get tests passing

commit 6bbfec381f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 20:00:59 2017 -0400

    Work on getting tests passing

commit 5e0a7672b7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 18:12:58 2017 -0400

    Work on GraphQL integration

commit 1c88fd154d
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 15:19:41 2017 -0400

    Upgrade subscriptions to use interceptors across the board

commit de5c01c00d
Author: James <jamesagnew@gmail.com>
Date:   Mon Aug 14 09:09:32 2017 -0400

    Work on subscription

commit 387d504098
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 06:19:25 2017 -0400

    Work on subscriptions

commit 95a607d155
Merge: d851de7ffd b9dbd64101
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Aug 13 22:42:22 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit d851de7ffd
Merge: 5413b276af 209752cd63
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Aug 13 22:42:00 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit b9dbd64101
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 22:40:35 2017 -0400

    Work on subscriptions

commit 12f89a423a
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:38:51 2017 -0400

    Minimize validation resources

commit f6868cce5c
Merge: 3b80779fd3 1e158311d8
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:05:34 2017 -0400

    Forward port fix for #710

    Merge branch 'master' into hapi3_refactor

commit 3b80779fd3
Merge: 1f534985e8 356d9acaf7
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 12:31:09 2017 -0400

    Forward port #705, #708, and #710

    Merge branch 'master' into hapi3_refactor

commit 1f534985e8
Merge: 7c39a47852 dedd3d635b
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 10:52:59 2017 -0400

    Forward port #695

    Merge branch 'master' into hapi3_refactor

commit 7c39a47852
Merge: e0ffb84d21 6efafe62f1
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 09:53:17 2017 -0400

    Forward port #688

    Merge branch 'master' into hapi3_refactor

commit e0ffb84d21
Merge: 52388c11c1 d19b00ff09
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 14:59:46 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 52388c11c1
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 06:21:46 2017 -0400

    Cleanup

commit 5413b276af
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Aug 10 11:36:25 2017 -0400

    Work on graph QL support

commit 209752cd63
Author: James <jamesagnew@gmail.com>
Date:   Thu Aug 10 11:18:19 2017 -0400

    Fix tests

commit 4543408dc8
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:55:50 2017 -0400

    Fix a potential deadlock

commit ee360f5376
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:22:06 2017 -0400

    Add R4 code to CLI

commit 1a95ba3b65
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Aug 3 06:14:01 2017 -0400

    More cleanup

commit f0d8802681
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 11:27:43 2017 -0400

    Tests are working!

commit a4cbda357e
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:42:04 2017 -0400

    Connection handling cleanup for new tests

commit 0e2cecfbd0
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:16:28 2017 -0400

    Clean up R4 JPA tests

commit 40317a650d
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 09:12:38 2017 -0400

    Work on R4 for JPA server

commit e7f8f8c30d
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 20:43:47 2017 -0400

    More work on porting tests

commit 43c9003258
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 07:09:29 2017 -0400

    Work on porting DSTU1 tests

commit 602857f1e2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 22:34:08 2017 -0400

    More work on bring unit tests up to date

commit e326a7b0cd
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:36:38 2017 -0400

    Credit for #686 and forward port the fix to R4 validator

commit 96543c3992
Merge: 3fb75aa61a 9901b802c4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:12:33 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3fb75aa61a
Author: James <jamesagnew@gmail.com>
Date:   Mon Jul 31 15:21:30 2017 -0400

    More work on cleanup

commit b02fbb6804
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 22:11:07 2017 -0400

    Work on porting STU1 tests

commit 1ae37b0db3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:56:10 2017 -0400

    Try to get coverage report working

commit 72b88849b3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:27:02 2017 -0400

    Fix android tests

commit e5f6c35aea
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 19:31:18 2017 -0400

    More work on getting legacy code cleaned up

commit 0b513b0845
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 18:41:13 2017 -0400

    Continue work on removing deprecated API

commit defea69aa3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 17:10:01 2017 -0400

    More cleanup of legacy code

commit 9ae7295705
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 07:11:45 2017 -0400

    More cleanup of legacy code

commit ebd3eeb5ee
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 06:43:25 2017 -0400

    More work on removing legacy code

commit 92224c2532
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 18:44:06 2017 -0400

    Remove DSTU1 Bundle

commit c52cacf71b
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 14:27:42 2017 -0400

    Now compiling

commit b405e51773
Merge: c3ddf04e25 cb2cea54d7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Jul 28 06:21:02 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit c3ddf04e25
Author: James <jamesagnew@gmail.com>
Date:   Thu Jul 27 11:06:06 2017 -0400

    Sync R4 releases in

commit b13333c3c0
Author: James <jamesagnew@gmail.com>
Date:   Fri Jul 14 05:52:33 2017 -0400

    JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions.

commit 2e60ff7521
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 20:02:46 2017 -0400

    Fix imports

commit a92ace2e0d
Merge: 3196db96d1 1a6b3ea867
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 12:02:27 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3196db96d1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 11:48:10 2017 -0400

    Don't add false paging link to request

commit bd4e1d3388
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 21:32:16 2017 -0400

    Finally building correctly!

commit 6464ce9304
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 16:38:28 2017 -0400

    Work on refactor

commit 0059f2e48e
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 8 07:16:20 2017 -0400

    Keep working on refactor

commit 6c2e87e8cc
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 22:35:13 2017 -0400

    Lots of work on refactor

commit 11cab97504
Merge: 34ec6b8807 6c47bd4c51
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:57 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 34ec6b8807
Merge: f8e647511b c520e60ac1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:49 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit f8e647511b
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 18:46:55 2017 -0400

    Work on hapi3 changes

commit c520e60ac1
Author: James <jamesagnew@gmail.com>
Date:   Wed Jul 5 08:08:40 2017 -0400

    Keep working on refactor

commit f1d2ee9092
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 22:10:59 2017 -0400

    Continue refactor for HAPI 3

commit 9281ccafc3
Merge: ea1264cd8e 294d080bd3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 20:34:16 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit ea1264cd8e
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 10:26:01 2017 -0400

    Continue work on refactor

commit fbe2f98a02
Merge: b2bef47100 0a4dcc32ec
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 06:21:22 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit b2bef47100
Author: James <jamesagnew@gmail.com>
Date:   Tue Jun 27 21:13:23 2017 -0400

    Work on refactor

commit 8f76e4e463
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jun 25 21:55:35 2017 -0400

    Lots of work on refactoring
2017-08-14 21:35:56 -04:00
James be5c5ebecd Merge in HAPI 3.0.0 working branch!
Squashed commit of the following:

commit 12f89a423a
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:38:51 2017 -0400

    Minimize validation resources

commit f6868cce5c
Merge: 3b80779fd3 1e158311d8
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:05:34 2017 -0400

    Forward port fix for #710

    Merge branch 'master' into hapi3_refactor

commit 3b80779fd3
Merge: 1f534985e8 356d9acaf7
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 12:31:09 2017 -0400

    Forward port #705, #708, and #710

    Merge branch 'master' into hapi3_refactor

commit 1f534985e8
Merge: 7c39a47852 dedd3d635b
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 10:52:59 2017 -0400

    Forward port #695

    Merge branch 'master' into hapi3_refactor

commit 7c39a47852
Merge: e0ffb84d21 6efafe62f1
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 09:53:17 2017 -0400

    Forward port #688

    Merge branch 'master' into hapi3_refactor

commit e0ffb84d21
Merge: 52388c11c1 d19b00ff09
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 14:59:46 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 52388c11c1
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 06:21:46 2017 -0400

    Cleanup

commit 209752cd63
Author: James <jamesagnew@gmail.com>
Date:   Thu Aug 10 11:18:19 2017 -0400

    Fix tests

commit 4543408dc8
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:55:50 2017 -0400

    Fix a potential deadlock

commit ee360f5376
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:22:06 2017 -0400

    Add R4 code to CLI

commit 1a95ba3b65
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Aug 3 06:14:01 2017 -0400

    More cleanup

commit f0d8802681
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 11:27:43 2017 -0400

    Tests are working!

commit a4cbda357e
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:42:04 2017 -0400

    Connection handling cleanup for new tests

commit 0e2cecfbd0
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:16:28 2017 -0400

    Clean up R4 JPA tests

commit 40317a650d
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 09:12:38 2017 -0400

    Work on R4 for JPA server

commit e7f8f8c30d
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 20:43:47 2017 -0400

    More work on porting tests

commit 43c9003258
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 07:09:29 2017 -0400

    Work on porting DSTU1 tests

commit 602857f1e2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 22:34:08 2017 -0400

    More work on bring unit tests up to date

commit e326a7b0cd
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:36:38 2017 -0400

    Credit for #686 and forward port the fix to R4 validator

commit 96543c3992
Merge: 3fb75aa61a 9901b802c4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:12:33 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3fb75aa61a
Author: James <jamesagnew@gmail.com>
Date:   Mon Jul 31 15:21:30 2017 -0400

    More work on cleanup

commit b02fbb6804
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 22:11:07 2017 -0400

    Work on porting STU1 tests

commit 1ae37b0db3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:56:10 2017 -0400

    Try to get coverage report working

commit 72b88849b3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:27:02 2017 -0400

    Fix android tests

commit e5f6c35aea
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 19:31:18 2017 -0400

    More work on getting legacy code cleaned up

commit 0b513b0845
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 18:41:13 2017 -0400

    Continue work on removing deprecated API

commit defea69aa3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 17:10:01 2017 -0400

    More cleanup of legacy code

commit 9ae7295705
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 07:11:45 2017 -0400

    More cleanup of legacy code

commit ebd3eeb5ee
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 06:43:25 2017 -0400

    More work on removing legacy code

commit 92224c2532
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 18:44:06 2017 -0400

    Remove DSTU1 Bundle

commit c52cacf71b
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 14:27:42 2017 -0400

    Now compiling

commit b405e51773
Merge: c3ddf04e25 cb2cea54d7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Jul 28 06:21:02 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit c3ddf04e25
Author: James <jamesagnew@gmail.com>
Date:   Thu Jul 27 11:06:06 2017 -0400

    Sync R4 releases in

commit b13333c3c0
Author: James <jamesagnew@gmail.com>
Date:   Fri Jul 14 05:52:33 2017 -0400

    JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions.

commit 2e60ff7521
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 20:02:46 2017 -0400

    Fix imports

commit a92ace2e0d
Merge: 3196db96d1 1a6b3ea867
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 12:02:27 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3196db96d1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 11:48:10 2017 -0400

    Don't add false paging link to request

commit bd4e1d3388
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 21:32:16 2017 -0400

    Finally building correctly!

commit 6464ce9304
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 16:38:28 2017 -0400

    Work on refactor

commit 0059f2e48e
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 8 07:16:20 2017 -0400

    Keep working on refactor

commit 6c2e87e8cc
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 22:35:13 2017 -0400

    Lots of work on refactor

commit 11cab97504
Merge: 34ec6b8807 6c47bd4c51
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:57 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 34ec6b8807
Merge: f8e647511b c520e60ac1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:49 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit f8e647511b
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 18:46:55 2017 -0400

    Work on hapi3 changes

commit c520e60ac1
Author: James <jamesagnew@gmail.com>
Date:   Wed Jul 5 08:08:40 2017 -0400

    Keep working on refactor

commit f1d2ee9092
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 22:10:59 2017 -0400

    Continue refactor for HAPI 3

commit 9281ccafc3
Merge: ea1264cd8e 294d080bd3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 20:34:16 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit ea1264cd8e
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 10:26:01 2017 -0400

    Continue work on refactor

commit fbe2f98a02
Merge: b2bef47100 0a4dcc32ec
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 06:21:22 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit b2bef47100
Author: James <jamesagnew@gmail.com>
Date:   Tue Jun 27 21:13:23 2017 -0400

    Work on refactor

commit 8f76e4e463
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jun 25 21:55:35 2017 -0400

    Lots of work on refactoring
2017-08-13 14:39:47 -04:00