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4913 Commits

Author SHA1 Message Date
James Agnew 7e3d062d15
Switch default client to JSON (#1392) 
* Start work on changing over

* Update tests

* More test fixes

* Work on generalizing binary access provider a bit

* Add expunge capability to binary storage, and also support actual binary
resources

* Work on binary provider

* Get the DB bound binary storage service working

* Test fixes

* Compile fix

* Fix compile error

* Test fix

* Test tweak

* Trying to figure out an intermittent failure

* Work on tests

* More work on tests

* Another test fix
 2019-07-22 21:27:10 -04:00
James Agnew 03918fe29a Add some javadoc 2019-07-19 13:42:01 -04:00
James Agnew d304a8fb6c Add a safety check to rename column task 2019-07-19 12:13:35 -04:00
James Agnew 4665ea82b3 Documentation tweak 2019-07-19 10:57:20 -04:00
James Agnew 458cfcfa12 Fix intermittent test failure 2019-07-19 10:46:49 -04:00
James Agnew 6ff8484914 One migrator tweak 2019-07-19 10:17:42 -04:00
James Agnew f53746cd63 One more set of migrator tweaks to account for latest changes 2019-07-19 10:10:00 -04:00
James Agnew fd23190b4c Fix on drop table task 2019-07-19 09:38:13 -04:00
James Agnew d433591d41 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-07-19 09:33:24 -04:00
James Agnew cf68efb826 Add drop table task to migrator 2019-07-19 09:33:01 -04:00
jamesagnew 13dae527d1 Fix #1390 - DiagnosticReport template correction 2019-07-19 05:44:08 -04:00
James Agnew 5bf4fa22e7 Allow patching in tranactions 2019-07-18 16:41:07 -04:00
James Agnew 87ab796309 Updates to validating interceptor 2019-07-18 12:57:30 -04:00
James Agnew 9fc10242b7 Convert validating intercwptors to use new framework 2019-07-18 08:25:35 -04:00
James Agnew ee7cff9445 Rename a few columns to not conflict with res´rved words 2019-07-18 05:47:32 -04:00
jamesagnew 7488047686 Add license headers 2019-07-17 18:53:23 -04:00
James Agnew 55c0d5b604
Add binary storage for Attachments (#1386) 
* Have this working now

* Add utility method

* Build fixes

* Add changelog
 2019-07-17 18:31:17 -04:00
Ken Stevens c73aebe0a0 IResource and IAnyResource are mutually exclusive... 2019-07-17 17:59:49 -04:00
Ken Stevens 465b4daa03 Changed IAnyResource to IResource per feedback 2019-07-17 17:59:49 -04:00
Ken Stevens 1d4dc5b3c5 add RESOURCE_PID to resource UserData before STORAGE_PRECOMMIT_RESOURCE_UPDATED hooks are called 2019-07-17 17:59:49 -04:00
Ken Stevens e27685e811 add RESOURCE_PID to resource UserData before STORAGE_PRECOMMIT_RESOURCE_CREATED hooks are called 2019-07-17 17:59:49 -04:00
James Agnew 76384abefb Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-07-17 10:57:43 -04:00
Diederik Muylwyk 456aac5e16
Resolve "experimental implementation for storing and expanding large ValuetSets cont'd..." (#1376) 
* Added experimental implementation for storing expanded ValueSets in terminology tables.

* Minor tweak to log message for consistency.

* Another minor tweak to log message for consistency.

* Renamed test.

* Initial work on ValueSetCodeAccumulator.

* Renamed addCode() to includeCode(); added excludeCode().

* Incremental work on large ValueSet expansion support; refactoring.

* Incremental work on large ValueSet expansion support; accounting for designations.

* Incremental work on large ValueSet expansion support; fixed missing designation.language in expanded ValueSets.

* Incremental work on large ValueSet expansion support; now actually populating TermConceptDesignation; added TermValueSetConceptDesignation as well.

* Missed a word.

* Tweak changelog entries.
 2019-07-16 17:12:21 -04:00
James Agnew f8444b90c8 Test tweak 2019-07-14 18:11:37 -04:00
James Agnew 33531f9010 Add some test logging 2019-07-14 16:56:43 -04:00
James Agnew 7831e8a0ed Add support for $snapshot generation and validation based on snapshots 2019-07-14 16:15:56 -04:00
James Agnew 120b93f204
Use HL7 FHIR Core Structures (#1382) 
* Ongoing work on core structures suport

* Ongoing work on this merge

* Ongoing work to clean up structures

* Credit for #1179

* Address compile issues

* Latest changes

* Work on parallel execution

* Work on getting tests passing

* Add H2 to migrator

* Test fix
 2019-07-14 10:16:40 -04:00
jamesagnew 534c71c1d5 Higher parallel count for JPA tests 2019-07-13 18:24:31 -04:00
James Agnew ba4bb005bc
Switch JPA unit tests to use H2 (#1381) 
* Start working on this

* Ongoing fixes to H2 branch

* Work on fixing tests

* Updated fixes

* Some test fixes

* More work on H2 migration

* Fixes to try and get the H2 migration building

* Test seem to be passing!

* Tweaks to locale randomization

* Add changelog
 2019-07-13 17:22:43 -04:00
Ken Stevens e54af48964
Merge pull request #1379 from jamesagnew/expunge-hooks 
Expunge hooks
 2019-07-12 17:16:06 -04:00
Ken Stevens accf57230b review feedback 2019-07-12 17:13:17 -04:00
Ken Stevens 78aec06c4d changes.xml 2019-07-12 13:38:45 -04:00
Ken Stevens 26ab115ff5 changes.xml 2019-07-12 13:34:32 -04:00
Ken Stevens 8d817b364c Merge remote-tracking branch 'remotes/origin/master' into expunge-hooks 
# Conflicts:
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/expunge/ExpungeEverythingService.java
 2019-07-12 13:27:11 -04:00
jamesagnew a5a9950e77 License header updates 2019-07-12 08:52:47 -04:00
James Agnew afd2b35ff6 Fix an intermittent test failure 2019-07-12 06:32:18 -04:00
James Agnew 75f0dc993c Try to prevent an intermittent test fix 2019-07-11 21:39:41 -04:00
James Agnew a352137938 Test fixes 2019-07-11 21:10:30 -04:00
James Agnew 1db019b6df Test fix and try to get Travis building again 2019-07-11 20:20:27 -04:00
James Agnew 642e62a563 Improve toString method 2019-07-11 18:17:13 -04:00
James Agnew dca55d054b Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-07-11 18:17:09 -04:00
Diederik Muylwyk 62e1b7e9ea Fixing minor overlooked change from recent pull request. 2019-07-11 17:07:26 -04:00
Diederik Muylwyk 0729e38e6e
Resolve "experimental implementation for storing expanded ValueSets in terminology tables" (#1369) 
* Added experimental implementation for storing expanded ValueSets in terminology tables.

* Minor tweak to log message for consistency.

* Another minor tweak to log message for consistency.

* Renamed test.

* Addressing review comments.

* Added migration tasks.
 2019-07-11 16:52:19 -04:00
James Agnew 32a8e1aead Omit extensions when encoding in summary mode (except for 
CapabilityStatement)
 2019-07-11 16:28:50 -04:00
Patrick Werner 9b938262e6
fixed nostore -> no-store 2019-07-10 16:31:22 +02:00
Ken Stevens b445df3e05 Merge remote-tracking branch 'remotes/origin/master' into expunge-hooks 2019-07-10 10:09:55 -04:00
Ken Stevens 7aaa75c255 fixed pointcut 2019-07-10 10:09:43 -04:00
James Agnew 0fb8db11a2 Add new pointcut: PROCESSING_COMPLETED 2019-07-09 14:32:11 -04:00
Ken Stevens 5e05703c1a Add expunge-everything hook. Also add RequestDetails to all expunge operations 2019-07-09 10:58:57 -04:00
James Agnew e50caaa899 Credit for #1370 2019-07-08 10:55:01 -04:00