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6397 Commits

Author SHA1 Message Date
Tadgh 9fec726b0e
Add missing indexes on ResourceIndexedSearchParamDate (#1847) 
* Add migration tasks for new indexes. Add new indexes to ResourceIndexedSearchParamDate

* fix dates on task, remove redundant index

* Today is not the 20th

* Fix incorrectly named migration indexes

* out of order indexes
 2020-05-15 05:38:16 -04:00
James Agnew 79a064dfd9
Optimize chain sql paths (#1844) 
* Start cleanup

* Almost workinf

* Possibly working!!

* Fixes

* Test fix

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/predicate/querystack/QueryRootStack.java

Co-authored-by: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/predicate/querystack/QueryRootStack.java

Co-authored-by: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/predicate/querystack/QueryRootStack.java

Co-authored-by: Ken Stevens <khstevens@gmail.com>

* Address review comments

* Add changelog

Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-05-15 05:36:12 -04:00
jamesagnew 8a360ebd5b Fix version enum 2020-05-12 20:16:21 -04:00
jamesagnew 1d13e29ac0 Version bump to 5.1.0-SNAPSHOT 2020-05-12 20:04:20 -04:00
jamesagnew d631ecff4a Prepare for 5.0.0 2020-05-12 11:49:18 -04:00
jamesagnew c7da4b0914 Build Cleanup 2020-05-11 13:25:58 -04:00
James Agnew 0c13a65871
Bump to latest Core version (#1841) 
* Start working on bumping core

* Work on tests

* Work on tests

* Bump core definitions

* Bump R5 defs

* Tweak changelog

* Test fix
 2020-05-11 12:37:16 -04:00
jamesagnew 386f395e4b Version bump 2 dependencies 2020-05-10 19:10:18 -04:00
jamesagnew 5ea94abde5 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2020-05-10 12:10:03 -04:00
jamesagnew 034e878a6f Add NOP tasks for 4.3.0 to avoid migrator issues 2020-05-10 12:09:47 -04:00
James Agnew 9d8bd0d51e
Bump R4 definitions to 4.0.1 (#1837) 
* Bump R4 definitions to 4.0.1

* Add changelog

* Test fixes
 2020-05-08 19:34:13 -04:00
jamesagnew 7f12f80358 Docs correction 2020-05-08 11:48:26 -04:00
jamesagnew 78fa296f1f License header updates 2020-05-07 19:37:16 -04:00
James Agnew 6cc07b6689
Make binary storage work for bulk export (#1836) 
* Make binary storage work for bulk export

* Add changelog

* Build fixes

* Test fix

* Test fix

* Test fix
 2020-05-07 19:20:22 -04:00
James Agnew b67509d7ff
Transaction write performance fix (#1832) 
* Performance fix for transactions

* Test fix

* Fixes

* Add docs

* Test fixes
 2020-05-07 10:56:41 -04:00
James Agnew a77aa6a28e
Multitenancy Ticket 2 - #1813 (#1821) 
* Work on multitenancy

* Second ticket started

* More multitenancy work

* Work on tenancy security

* Work on multitenancy

* Test fixes

* Add docs

* cs tweak

* Multitenancy fixes

* Add debug log

* Fix build

* Add headers

* Add partition selection interceptor hook

* Update hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/api/Constants.java

Co-authored-by: Ken Stevens <khstevens@gmail.com>

* Account for review comments

* Resolve FIXMES

* Work on tests

* Test fixes

* A bit more cleanup

* Work on multitenancy

* Update hapi-fhir-docs/src/main/java/ca/uhn/hapi/fhir/docs/ClientExamples.java

Co-authored-by: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/client/examples.md

Co-authored-by: Ken Stevens <khstevens@gmail.com>

* Address review comments

* Allow disabling text modifier indexing

* Add changelog

* Docs fixes

* Address review comment

* Resolve merge conflicts

* Merge master

* Compile fix

* Test fix

Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-05-05 15:12:15 -04:00
James Agnew 35c2b7a2c1
Allow disabling text modifier indexing (#1831) 
* Allow disabling text modifier indexing

* Add changelog

* Address review comment

* Resolve merge conflicts
 2020-05-05 12:16:55 -04:00
James Agnew dada217966
Clean up hash code calculation (#1830) 
* Clean up hash code calculation

* Test fixes

* Test fix

* Test fixes

* Compile fix

* Test fix
 2020-05-05 11:11:24 -04:00
James Agnew 91147cf6b0
Scope tag search to correct resource type (#1829) 
* failing _tag tests

* cleanup

* Scope tag query to correct resource type

* Changelog

* Test fix

Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-05-05 11:09:46 -04:00
jamesagnew ceae417d35 Credit for #1710 2020-05-04 05:42:32 -04:00
Ian 41c715dc2d
Make BaseOrListParam and BaseParam visible outside of the package (#1710) 2020-05-04 05:39:10 -04:00
jamesagnew 8b49142b94 Clean up migrator tasks 2020-05-01 15:03:36 -04:00
jamesagnew 31f86953df Fix compile error 2020-05-01 13:57:44 -04:00
jamesagnew 394a47b83a Fix YAML error 2020-05-01 13:03:59 -04:00
jamesagnew 586089fc69 Credit for #1749 2020-05-01 07:38:31 -04:00
gematik FuE 9ace4889bc
enhance constructor, so an existing InterceptorService could be passed in (#1749) 2020-05-01 07:36:45 -04:00
jamesagnew a786756169 Credit for #1812 2020-05-01 07:27:12 -04:00
Zhe Wang 38a899bf64
Take super class methods into account and adding unit test (#1812) 
* take super class methods into account as well

* added unit test for pull request 44f9b416ee

* take super class methods into account as well

* added unit test for pull request 44f9b416ee

* added unit test
 2020-05-01 07:24:28 -04:00
jamesagnew 439a901e30 Credit for #1734 2020-05-01 05:56:47 -04:00
Bert Roos c8ad3e80e6
Correction in comment (#1734) 
The description for SERVER_INCOMING_REQUEST_PRE_HANDLED referred to itself rather than to SERVER_INCOMING_REQUEST_PRE_PROCESSED. Along with this corrected begin into begun.
 2020-05-01 05:36:28 -04:00
jamesagnew 41056092ed License header updates 2020-04-30 18:24:07 -04:00
James Agnew 3d5a8bb3f8
Add UCUM support (#1824) 
* Add UCUM support

* Add changelog

* Some cleanup

* Test fix

* Add flywayDB callback

* Add hooks to schema migrator
 2020-04-30 15:22:41 -04:00
Tadgh f94f2fde65
Add delegating setters and getters to DaoConfig (#1825) 2020-04-30 14:32:22 -04:00
Tadgh 8fce86bba5
Merge pull request #1730 from jamesagnew/date-match-bug 
Add integer date fields to ResourceIndexedSearchParamDate
 2020-04-30 08:53:35 -07:00
Tadgh a5e1b3d159 Minor changes for merge conflicts 2020-04-29 16:18:02 -07:00
Tadgh 8f8a8a3dc2 Merge branch 'master' into date-match-bug 2020-04-29 16:17:50 -07:00
jamesagnew e439891ea2 Add test 2020-04-29 15:21:54 -04:00
jamesagnew 0d8c42ee1a Migrator tweaks 2020-04-29 10:13:55 -04:00
jamesagnew 885a18e0d8 Credit for #1788 2020-04-29 09:12:36 -04:00
Thomas Papke ea817de68a
Extend support for additional forwared headers x-forwarded-port and (#1788) 
x-forwarded-prefix
 2020-04-29 09:01:39 -04:00
jamesagnew e219c1774b Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2020-04-24 05:45:26 -04:00
James Agnew ededcc18d2
Add Partitioning / Multitenancy (#1807) 
* Work on multitenancy

* Work on multitenancy

* Work on multitenancy

* Add columns

* Work on multitenancy

* Work on muiltitenancy

* Work on multitenancy

* Work on uniques

* Work on multitenancy

* Work on multitenancy

* Work on multitenancy

* More work on multitenancy

* Work on multitenancy

* Multitenancy work

* Work on multitenancy

* Work on multitenancy

* Work on multitenancy

* Work on multitenancy

* Work on docs

* Work on multitenancy

* Work on docs

* DOcs work

* Tenancy docs

* Work on docs

* Finish docs

* Add changelog

* Rename config

* Add migration tasks

* Fix typo

* Migration fix

* One more migration fix

* A couple more migration fixes

* Docs cleanup

* Work on docs

* Bump boot version

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Work on review comments

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/schema.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/index/IdHelperService.java

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Address review comments

* Compile fx

* Test fixes

* One more bugfix

* Update operation name

* Add one more constant

* Roll back a change that was causing test failures

* Test fixes

Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-04-24 05:45:11 -04:00
jamesagnew 37aa11182d Docs fixes 2020-04-23 21:05:23 -04:00
Ken Stevens 0b1a64d093
Merge pull request #1809 from jamesagnew/ks-20200420-changelog 
retroactively add changelog for a search database change
 2020-04-23 11:39:24 -04:00
Ken Stevens b728c14b98
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/4_3_0/1698-remove-search-last-used-column.yaml 
Co-Authored-By: James Agnew <jamesagnew@gmail.com>
 2020-04-23 11:39:12 -04:00
jamesagnew c994f48ccd Add test case 2020-04-23 10:37:05 -04:00
James Agnew 5f88d87027
Tweak to #1801 - Normalize double leading zeros in database (#1815) 2020-04-23 09:44:08 -04:00
jamesagnew 371cda280a Test fix 2020-04-23 08:50:22 -04:00
jamesagnew 4978a5de21 Add test 2020-04-23 05:30:08 -04:00
jamesagnew ccda668d0c Restore subscription loading at startup 2020-04-23 05:28:56 -04:00